FvH4_7g11332

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000220
Physical Location & Seq
Forward (+)
10552164 .. 10553159
996 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g11332.t1

Sequence Viewer

Length: 996 bp
ATGAAACTTAAACTTCGAGATAGAGAAGCAGCTCATTCTCATGTGGACCAAAAAGATCCATTGGATGTCTTTGATATTGGTACCGAGTTTGATGATGATGAAGAAAGAGATCAACTTTATGAATGGATAAGGCCGCTTCATCTAGATGACGAGGAACGGAATCCATCTCCTACAGTTGCTCGTGAAGCACGTGCGCAAGGAATAAATGTTGAACAAGTAATTCAAGAAGAGGTTATAGGGCCTGATAGAGAAACTATCGATGCATTAGTGGGTCGAGCTAATATTTTAATTTCCTCTCGTGGAGGGTCTCGTGACTCACATGTTCCTTCCATGATAAATGAGAGCTCTAGTAGCACCAGATCAGGAGGCTCATCAAGCATCAGAGGTGATGATAGTGGAGGTGATCACGGAGTTCAAGGTTACAGTGGAAATCAAGTTGATCAGATGAGTCCATTCACTTGTGAAACGCAATTCACACATGCAACACAAGATGGAGATCATGGAAGTAGGAGAGCAGGACCCGGCATTGGTGCTATAGGAAAAAATTATACACCAAGAGAAAGAGGCCAAGGAAGCATGTCAAGGCATGAAAATGATTCTTTATCTCCCTCTATTGACTCATTTGGTGTGAGAGGAAGCAATGATGGACCATACCCATACAGCCAAAATCTGGCAATGCCTTATCCAGCATATACCATGCCTTATGGGGTGCAATCAAGTGATAACTCATGGTCACAGTCGGAAGGACAATCTTCTAATAATTATGGTTATGGCCAAGGTCAAGCGATGCCCAATCCCTATTATAACTTCCAGTATGGAAATCCACAGTCAGCCCCCCTTGGCCCATATGGTTGGCATGTAAATCAATACATGCAAAACTACAAATGTGAGGTATCATTTAATGACTATTCTTCACAATACACTAAAGGCTCTGCACAGAGAGACGATACAGATAGTGAAAATTTTGTACCTCATAGGTCTTCTACGTGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0050896 GO:0051716 GO:0071496
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

332

Amino Acids

36.71

Weight (kDa)

4.78

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 804
Acc16I TGCGCA 1 cut(s) 195
Acc65I GGTACC 1 cut(s) 80
AccB1I GGYRCC 1 cut(s) 80
AccB7I CCANNNNNTGG 1 cut(s) 670
AciI CCGC 1 cut(s) 134
AclWI GGATC 1 cut(s) 50
AcoI YGGCCR 1 cut(s) 772
AcsI RAATTY 1 cut(s) 961
AcvI CACGTG 1 cut(s) 191
AfaI GTAC 2 cut(s) 82, 969
AfiI CCNNNNNNNGG 2 cut(s) 527, 670
AflIII ACRYGT 1 cut(s) 319
AgsI TTSAA 3 cut(s) 212, 224, 416
AluBI AGCT 3 cut(s) 32, 278, 345
AluI AGCT 3 cut(s) 32, 278, 345
Alw21I GWGCWC 1 cut(s) 347
Alw26I GTCTC 2 cut(s) 312, 936
AlwI GGATC 1 cut(s) 50
AoxI GGCC 5 cut(s) 131, 239, 565, 772, 841
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 961
Asp718I GGTACC 1 cut(s) 80
AspLEI GCGC 1 cut(s) 196
AspS9I GGNCC 5 cut(s) 46, 239, 518, 647, 842
AsuC2I CCSGG 1 cut(s) 522
AsuHPI GGTGA 2 cut(s) 398, 413
AvaII GGWCC 3 cut(s) 46, 518, 647
BalI TGGCCA 1 cut(s) 774
BanI GGYRCC 1 cut(s) 80
BanII GRGCYC 1 cut(s) 347
BauI CACGAG 3 cut(s) 180, 297, 309
BbrPI CACGTG 1 cut(s) 191
BbsI GAAGAC 1 cut(s) 972
Bbv12I GWGCWC 1 cut(s) 347
BbvI GCAGC 1 cut(s) 41
BccI CCATC 3 cut(s) 172, 485, 638
BclI TGATCA 2 cut(s) 403, 439
BcnI CCSGG 1 cut(s) 522
BcoDI GTCTC 2 cut(s) 312, 936
BfaI CTAG 2 cut(s) 143, 348
BfmI CTRYAG 2 cut(s) 171, 534
BisI GCNGC 2 cut(s) 30, 134
BlsI GCNGC 2 cut(s) 31, 135
Bme1390I CCNGG 1 cut(s) 522
Bme18I GGWCC 3 cut(s) 46, 518, 647
BmgT120I GGNCC 5 cut(s) 46, 239, 518, 647, 842
BmiI GGNNCC 2 cut(s) 82, 520
BmrFI CCNGG 1 cut(s) 522
BmsI GCATC 3 cut(s) 250, 387, 777
BpiI GAAGAC 1 cut(s) 972
BpuMI CCSGG 1 cut(s) 522
Bsa29I ATCGAT 1 cut(s) 258
BsaAI YACGTR 2 cut(s) 191, 987
BsaBI GATNNNNATC 1 cut(s) 495
BsaI GGTCTC 1 cut(s) 312
BsaJI CCNNGG 3 cut(s) 568, 775, 838
Bsc4I CCNNNNNNNGG 2 cut(s) 527, 670
Bse1I ACTGG 1 cut(s) 811
Bse3DI GCAATG 2 cut(s) 646, 681
Bse8I GATNNNNATC 1 cut(s) 495
BseCI ATCGAT 1 cut(s) 258
BseDI CCNNGG 3 cut(s) 568, 775, 838
BseGI GGATG 1 cut(s) 70
BseJI GATNNNNATC 1 cut(s) 495
BseLI CCNNNNNNNGG 2 cut(s) 527, 670
BseMI GCAATG 2 cut(s) 646, 681
BseNI ACTGG 1 cut(s) 811
BseXI GCAGC 1 cut(s) 41
BsgI GTGCAG 1 cut(s) 918
BshFI GGCC 5 cut(s) 133, 241, 567, 774, 843
BshNI GGYRCC 1 cut(s) 80
BshVI ATCGAT 1 cut(s) 258
BsiHKAI GWGCWC 1 cut(s) 347
BsiSI CCGG 1 cut(s) 522
BslI CCNNNNNNNGG 2 cut(s) 527, 670
BsmAI GTCTC 2 cut(s) 312, 936
BsmBI CGTCTC 1 cut(s) 936
BsnI GGCC 5 cut(s) 133, 241, 567, 774, 843
Bso31I GGTCTC 1 cut(s) 312
Bsp1286I GDGCHC 1 cut(s) 347
Bsp143I GATC 6 cut(s) 55, 109, 359, 403, 439, 496
BspACI CCGC 1 cut(s) 134
BspANI GGCC 5 cut(s) 133, 241, 567, 774, 843
BspDI ATCGAT 1 cut(s) 258
BspLI GGNNCC 2 cut(s) 82, 520
BspPI GGATC 1 cut(s) 50
BspT107I GGYRCC 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 312
BsrDI GCAATG 2 cut(s) 646, 681
BsrI ACTGG 1 cut(s) 811
BssECI CCNNGG 3 cut(s) 568, 775, 838
BssMI GATC 6 cut(s) 55, 109, 359, 403, 439, 496
BssSI CACGAG 3 cut(s) 180, 297, 309
BssT1I CCWWGG 3 cut(s) 568, 775, 838
Bst2BI CACGAG 3 cut(s) 180, 297, 309
Bst4CI ACNGT 4 cut(s) 175, 425, 738, 828
Bst6I CTCTTC 1 cut(s) 222
BstBAI YACGTR 2 cut(s) 191, 987
BstF5I GGATG 1 cut(s) 70
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 6 cut(s) 58, 112, 362, 406, 442, 499
BstMAI GTCTC 2 cut(s) 312, 936
BstMBI GATC 6 cut(s) 55, 109, 359, 403, 439, 496
BstMWI GCNNNNNNNGC 4 cut(s) 185, 351, 375, 573
BstNSI RCATGY 5 cut(s) 323, 482, 580, 860, 874
BstSCI CCNGG 1 cut(s) 520
BstSFI CTRYAG 2 cut(s) 171, 534
BstV1I GCAGC 1 cut(s) 41
BstV2I GAAGAC 1 cut(s) 972
BstX2I RGATCY 1 cut(s) 55
BstXI CCANNNNNNTGG 1 cut(s) 852
BstYI RGATCY 1 cut(s) 55
Bsu15I ATCGAT 1 cut(s) 258
BsuRI GGCC 5 cut(s) 133, 241, 567, 774, 843
BsuTUI ATCGAT 1 cut(s) 258
BtgZI GCGATG 1 cut(s) 800
BtsCI GGATG 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 430
CfoI GCGC 1 cut(s) 196
Cfr13I GGNCC 5 cut(s) 46, 239, 518, 647, 842
ClaI ATCGAT 1 cut(s) 258
Csp6I GTAC 2 cut(s) 81, 968
CviQI GTAC 2 cut(s) 81, 968
DpnI GATC 6 cut(s) 57, 111, 361, 405, 441, 498
DpnII GATC 6 cut(s) 55, 109, 359, 403, 439, 496
EaeI YGGCCR 1 cut(s) 772
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Ecl136II GAGCTC 1 cut(s) 345
Eco130I CCWWGG 3 cut(s) 568, 775, 838
Eco24I GRGCYC 1 cut(s) 347
Eco31I GGTCTC 1 cut(s) 312
Eco47I GGWCC 3 cut(s) 46, 518, 647
Eco53kI GAGCTC 1 cut(s) 345
Eco72I CACGTG 1 cut(s) 191
EcoICRI GAGCTC 1 cut(s) 345
EcoO109I RGGNCCY 2 cut(s) 239, 518
EcoT14I CCWWGG 3 cut(s) 568, 775, 838
EcoT22I ATGCAT 1 cut(s) 265
EcoT38I GRGCYC 1 cut(s) 347
ErhI CCWWGG 3 cut(s) 568, 775, 838
Esp3I CGTCTC 1 cut(s) 936
FauNDI CATATG 1 cut(s) 847
FbaI TGATCA 2 cut(s) 403, 439
Fnu4HI GCNGC 2 cut(s) 30, 134
FokI GGATG 1 cut(s) 77
FriOI GRGCYC 1 cut(s) 347
Fsp4HI GCNGC 2 cut(s) 30, 134
FspBI CTAG 2 cut(s) 143, 348
FspI TGCGCA 1 cut(s) 195
GlaI GCGC 1 cut(s) 195
GluI GCNGC 2 cut(s) 30, 134
HaeIII GGCC 5 cut(s) 133, 241, 567, 774, 843
HapII CCGG 1 cut(s) 522
HhaI GCGC 1 cut(s) 196
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HinfI GANTC 5 cut(s) 160, 314, 448, 596, 617
HpaII CCGG 1 cut(s) 522
HphI GGTGA 2 cut(s) 398, 413
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 3 cut(s) 383, 444, 742
Hpy188III TCNNGA 6 cut(s) 17, 143, 182, 224, 311, 363
Hpy8I GTNNAC 1 cut(s) 46
HpyAV CCTTC 2 cut(s) 336, 737
HpyCH4III ACNGT 4 cut(s) 175, 425, 738, 828
HpyCH4IV ACGT 2 cut(s) 190, 986
HpyCH4V TGCA 5 cut(s) 263, 482, 712, 874, 935
HpyF10VI GCNNNNNNNGC 4 cut(s) 185, 351, 375, 573
HpySE526I ACGT 2 cut(s) 190, 986
HspAI GCGC 1 cut(s) 194
KpnI GGTACC 1 cut(s) 84
Ksp22I TGATCA 2 cut(s) 403, 439
Kzo9I GATC 6 cut(s) 55, 109, 359, 403, 439, 496
LpnPI CCDG 8 cut(s) 255, 348, 370, 501, 535, 656, 699, 824
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 3 cut(s) 250, 387, 777
MaeI CTAG 2 cut(s) 143, 348
MaeII ACGT 2 cut(s) 190, 986
MaeIII GTNAC 3 cut(s) 311, 419, 732
MalI GATC 6 cut(s) 57, 111, 361, 405, 441, 498
MboI GATC 6 cut(s) 55, 109, 359, 403, 439, 496
MboII GAAGA 5 cut(s) 113, 239, 744, 903, 972
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 347
MlsI TGGCCA 1 cut(s) 774
MluCI AATT 6 cut(s) 219, 288, 470, 544, 760, 961
MluNI TGGCCA 1 cut(s) 774
MlyI GAGTC 3 cut(s) 308, 457, 611
MmeI TCCRAC 1 cut(s) 720
Mox20I TGGCCA 1 cut(s) 774
Mph1103I ATGCAT 1 cut(s) 265
MscI TGGCCA 1 cut(s) 774
MseI TTAA 4 cut(s) 9, 287, 900, 994
MslI CAYNNNNRTG 3 cut(s) 39, 144, 591
Msp20I TGGCCA 1 cut(s) 774
MspI CCGG 1 cut(s) 522
MspR9I CCNGG 1 cut(s) 522
MwoI GCNNNNNNNGC 4 cut(s) 185, 351, 375, 573
NciI CCSGG 1 cut(s) 522
NdeI CATATG 1 cut(s) 847
NdeII GATC 6 cut(s) 55, 109, 359, 403, 439, 496
NlaIV GGNNCC 2 cut(s) 82, 520
NmuCI GTSAC 2 cut(s) 311, 732
NsbI TGCGCA 1 cut(s) 195
NsiI ATGCAT 1 cut(s) 265
NspI RCATGY 5 cut(s) 323, 482, 580, 860, 874
PciI ACATGT 1 cut(s) 319
PcsI WCGNNNNNNNCGW 1 cut(s) 187
PfeI GAWTC 2 cut(s) 160, 596
PflMI CCANNNNNTGG 1 cut(s) 670
PkrI GCNGC 2 cut(s) 31, 135
PleI GAGTC 3 cut(s) 308, 456, 611
PmaCI CACGTG 1 cut(s) 191
PmlI CACGTG 1 cut(s) 191
PpsI GAGTC 3 cut(s) 308, 456, 611
Ppu21I YACGTR 2 cut(s) 191, 987
PpuMI RGGWCCY 1 cut(s) 518
PscI ACATGT 1 cut(s) 319
PsiI TTATAA 1 cut(s) 804
Psp124BI GAGCTC 1 cut(s) 347
Psp5II RGGWCCY 1 cut(s) 518
PspCI CACGTG 1 cut(s) 191
PspN4I GGNNCC 2 cut(s) 82, 520
PspPI GGNCC 5 cut(s) 46, 239, 518, 647, 842
PspPPI RGGWCCY 1 cut(s) 518
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 2 cut(s) 82, 969
RsaNI GTAC 2 cut(s) 81, 968
RseI CAYNNNNRTG 3 cut(s) 39, 144, 591
SacI GAGCTC 1 cut(s) 347
SaqAI TTAA 4 cut(s) 9, 287, 900, 994
SatI GCNGC 2 cut(s) 30, 134
Sau3AI GATC 6 cut(s) 55, 109, 359, 403, 439, 496
Sau96I GGNCC 5 cut(s) 46, 239, 518, 647, 842
SchI GAGTC 3 cut(s) 308, 457, 611
ScrFI CCNGG 1 cut(s) 522
SduI GDGCHC 1 cut(s) 347
SfaNI GCATC 3 cut(s) 250, 387, 777
SfcI CTRYAG 2 cut(s) 171, 534
SinI GGWCC 3 cut(s) 46, 518, 647
SmiMI CAYNNNNRTG 3 cut(s) 39, 144, 591
Sse9I AATT 6 cut(s) 219, 288, 470, 544, 760, 961
SsiI CCGC 1 cut(s) 134
SspI AATATT 1 cut(s) 283
SspMI CTAG 2 cut(s) 143, 348
SstI GAGCTC 1 cut(s) 347
StyD4I CCNGG 1 cut(s) 520
StyI CCWWGG 3 cut(s) 568, 775, 838
TaaI ACNGT 4 cut(s) 175, 425, 738, 828
TaiI ACGT 2 cut(s) 193, 989
TaqI TCGA 3 cut(s) 16, 258, 274
TasI AATT 6 cut(s) 219, 288, 470, 544, 760, 961
TauI GCSGC 1 cut(s) 136
TfiI GAWTC 2 cut(s) 160, 596
Tru1I TTAA 4 cut(s) 9, 287, 900, 994
Tru9I TTAA 4 cut(s) 9, 287, 900, 994
TscAI CASTG 1 cut(s) 430
TseFI GTSAC 2 cut(s) 311, 732
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 2 cut(s) 311, 732
TspDTI ATGAA 5 cut(s) 17, 114, 128, 135, 603
TspGWI ACGGA 2 cut(s) 172, 423
TspRI CASTG 1 cut(s) 430
Van91I CCANNNNNTGG 1 cut(s) 670
VpaK11BI GGWCC 3 cut(s) 46, 518, 647
XapI RAATTY 1 cut(s) 961
XbaI TCTAGA 1 cut(s) 142
XceI RCATGY 5 cut(s) 323, 482, 580, 860, 874
XspI CTAG 2 cut(s) 143, 348
Zsp2I ATGCAT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.