RchiOBHm_Chr6g0289011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000220
Physical Location & Seq
Reverse (-)
52218492 .. 52219752
1261 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25929

Sequence Viewer

Length: 294 bp
ATGGGTGGTTGTGGGCACTTCTTCATGGGACGACGTCAACAAAGCGGTATGGGTTTTGCCCGCGGCAGCGATGAGACTTTTTCAATGAGCTGTTGGAGGGTTGGGGCGTGTGGGGCCCAATTGGGTCTTGCCGAGATGTTTCGGCTTCGATTGGTGCCTTCTGGATGGCGACGTCGTAGTGGTGATGATGTTTCTTTAAGGCATGACGATGGTGGTACCCTTACGGCCACGGTGGCTTCGAAGATACACTCTGGTTGCGTGTGGCAGTTTTTCTACAGTAGGGTCGAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.68

Weight (kDa)

9.3

Isoelectric Point (pI)

69.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 37, 175
Acc65I GGTACC 1 cut(s) 215
AccB1I GGYRCC 2 cut(s) 154, 215
AccII CGCG 1 cut(s) 63
AciI CCGC 3 cut(s) 45, 61, 63
AcoI YGGCCR 1 cut(s) 225
AcyI GRCGYC 2 cut(s) 34, 172
AfaI GTAC 1 cut(s) 217
AgsI TTSAA 1 cut(s) 84
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
Alw26I GTCTC 1 cut(s) 68
AoxI GGCC 2 cut(s) 114, 225
ApaI GGGCCC 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 66
Asp718I GGTACC 1 cut(s) 215
AspS9I GGNCC 2 cut(s) 114, 115
AsuHPI GGTGA 1 cut(s) 194
AsuII TTCGAA 1 cut(s) 239
BaeGI GKGCMC 2 cut(s) 18, 118
BanI GGYRCC 2 cut(s) 154, 215
BanII GRGCYC 1 cut(s) 118
BbvI GCAGC 1 cut(s) 78
BccI CCATC 2 cut(s) 159, 203
BceAI ACGGC 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 68
BfmI CTRYAG 1 cut(s) 274
BglI GCCNNNNNGGC 1 cut(s) 233
BisI GCNGC 2 cut(s) 64, 67
BlsI GCNGC 2 cut(s) 65, 68
BmgT120I GGNCC 2 cut(s) 114, 115
BmiI GGNNCC 4 cut(s) 115, 116, 156, 217
Bpu14I TTCGAA 1 cut(s) 239
BsaHI GRCGYC 2 cut(s) 34, 172
BsaJI CCNNGG 2 cut(s) 61, 228
BseDI CCNNGG 2 cut(s) 61, 228
BseGI GGATG 1 cut(s) 170
BseSI GKGCMC 2 cut(s) 18, 118
BseXI GCAGC 1 cut(s) 78
Bsh1236I CGCG 1 cut(s) 63
BshFI GGCC 2 cut(s) 116, 227
BshNI GGYRCC 2 cut(s) 154, 215
BslFI GGGAC 1 cut(s) 42
BsmAI GTCTC 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 42
BsnI GGCC 2 cut(s) 116, 227
Bsp119I TTCGAA 1 cut(s) 239
Bsp120I GGGCCC 1 cut(s) 114
Bsp1286I GDGCHC 2 cut(s) 18, 118
BspACI CCGC 3 cut(s) 45, 61, 63
BspANI GGCC 2 cut(s) 116, 227
BspFNI CGCG 1 cut(s) 63
BspLI GGNNCC 4 cut(s) 115, 116, 156, 217
BspT104I TTCGAA 1 cut(s) 239
BspT107I GGYRCC 2 cut(s) 154, 215
BssECI CCNNGG 2 cut(s) 61, 228
BssNI GRCGYC 2 cut(s) 34, 172
Bst4CI ACNGT 2 cut(s) 232, 278
BstACI GRCGYC 2 cut(s) 34, 172
BstBI TTCGAA 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 61
BstDSI CCRYGG 2 cut(s) 61, 228
BstF5I GGATG 1 cut(s) 170
BstFNI CGCG 1 cut(s) 63
BstMAI GTCTC 1 cut(s) 68
BstMWI GCNNNNNNNGC 2 cut(s) 113, 233
BstSFI CTRYAG 1 cut(s) 274
BstSLI GKGCMC 2 cut(s) 18, 118
BstUI CGCG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 78
BsuRI GGCC 2 cut(s) 116, 227
BtgI CCRYGG 2 cut(s) 61, 228
BtgZI GCGATG 1 cut(s) 84
BtsCI GGATG 1 cut(s) 170
Cac8I GCNNGC 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 114, 115
Cfr42I CCGCGG 1 cut(s) 64
Csp6I GTAC 1 cut(s) 216
CviAII CATG 2 cut(s) 25, 203
CviJI RGCY 6 cut(s) 90, 116, 145, 227, 236, 290
CviKI_1 RGCY 6 cut(s) 90, 116, 145, 227, 236, 290
CviQI GTAC 1 cut(s) 216
EaeI YGGCCR 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 118
EcoO109I RGGNCCY 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 118
FaeI CATG 2 cut(s) 28, 206
FaiI YATR 3 cut(s) 26, 50, 204
FaqI GGGAC 1 cut(s) 42
FatI CATG 2 cut(s) 24, 202
FauI CCCGC 1 cut(s) 68
Fnu4HI GCNGC 2 cut(s) 64, 67
FokI GGATG 1 cut(s) 177
FriOI GRGCYC 1 cut(s) 118
Fsp4HI GCNGC 2 cut(s) 64, 67
GluI GCNGC 2 cut(s) 64, 67
HaeIII GGCC 2 cut(s) 116, 227
Hin1I GRCGYC 2 cut(s) 34, 172
Hin1II CATG 2 cut(s) 28, 206
HincII GTYRAC 1 cut(s) 38
HindII GTYRAC 1 cut(s) 38
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 1 cut(s) 38
Hpy188III TCNNGA 1 cut(s) 162
Hpy8I GTNNAC 1 cut(s) 38
Hpy99I CGWCG 3 cut(s) 36, 174, 177
HpyAV CCTTC 1 cut(s) 168
HpyCH4III ACNGT 2 cut(s) 232, 278
HpyCH4IV ACGT 2 cut(s) 34, 172
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 233
HpySE526I ACGT 2 cut(s) 34, 172
Hsp92I GRCGYC 2 cut(s) 34, 172
Hsp92II CATG 2 cut(s) 28, 206
KpnI GGTACC 1 cut(s) 219
KspI CCGCGG 1 cut(s) 64
LpnPI CCDG 2 cut(s) 147, 237
Lsp1109I GCAGC 1 cut(s) 78
MaeII ACGT 2 cut(s) 34, 172
MboII GAAGA 2 cut(s) 13, 253
MfeI CAATTG 1 cut(s) 119
MhlI GDGCHC 2 cut(s) 18, 118
MluCI AATT 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 74
MnlI CCTC 2 cut(s) 90, 280
MseI TTAA 1 cut(s) 197
MslI CAYNNNNRTG 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 63
MunI CAATTG 1 cut(s) 119
MvnI CGCG 1 cut(s) 63
MwoI GCNNNNNNNGC 2 cut(s) 113, 233
NlaIII CATG 2 cut(s) 28, 206
NlaIV GGNNCC 4 cut(s) 115, 116, 156, 217
NmeAIII GCCGAG 1 cut(s) 157
NspV TTCGAA 1 cut(s) 239
PcsI WCGNNNNNNNCGW 1 cut(s) 236
PflFI GACNNNGTC 1 cut(s) 33
PkrI GCNGC 2 cut(s) 65, 68
PspN4I GGNNCC 4 cut(s) 115, 116, 156, 217
PspOMI GGGCCC 1 cut(s) 114
PspPI GGNCC 2 cut(s) 114, 115
PsyI GACNNNGTC 1 cut(s) 33
RsaI GTAC 1 cut(s) 217
RsaNI GTAC 1 cut(s) 216
RseI CAYNNNNRTG 1 cut(s) 207
SacII CCGCGG 1 cut(s) 64
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 2 cut(s) 64, 67
Sau96I GGNCC 2 cut(s) 114, 115
SduI GDGCHC 2 cut(s) 18, 118
SetI ASST 3 cut(s) 37, 92, 175
SfcI CTRYAG 1 cut(s) 274
Sfr303I CCGCGG 1 cut(s) 64
SfuI TTCGAA 1 cut(s) 239
SgrBI CCGCGG 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 207
Sse9I AATT 1 cut(s) 119
SsiI CCGC 3 cut(s) 45, 61, 63
TaaI ACNGT 2 cut(s) 232, 278
TaiI ACGT 2 cut(s) 37, 175
TaqI TCGA 3 cut(s) 148, 239, 285
TasI AATT 1 cut(s) 119
TauI GCSGC 1 cut(s) 66
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TseI GCWGC 1 cut(s) 66
TspDTI ATGAA 1 cut(s) 13
Tth111I GACNNNGTC 1 cut(s) 33
ZraI GACGTC 2 cut(s) 35, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.