Rmu_sc0004990.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004990.1
Physical Location & Seq
Forward (+)
1607 .. 1867
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004990.1_g000001.1.cds

Sequence Viewer

Length: 261 bp
atgtttataaaactatacaaagggccccaaattgatcagggcccaaaagtgccaccggagatcaaaacagaggtgatagcatggataaagagaaaagattctattaagcaagaaaaggcagctgttcaagatgatattagagaagaactccgcaatgattatcttggcaatcaaacaagtctgtacaatgacgatggcgacaatgctgatgatgatgatggatttcagtatccaccagacatgcaccctgcagaacgataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

86

Amino Acids

9.94

Weight (kDa)

4.53

Isoelectric Point (pI)

44.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000220)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 8
AciI CCGC 1 cut(s) 151
AfaI GTAC 1 cut(s) 185
AgsI TTSAA 1 cut(s) 128
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
AoxI GGCC 2 cut(s) 23, 40
ApaI GGGCCC 2 cut(s) 27, 44
ApeKI GCWGC 1 cut(s) 119
Asp700I GAANNNNTTC 1 cut(s) 97
AspS9I GGNCC 4 cut(s) 23, 24, 40, 41
AsuHPI GGTGA 1 cut(s) 85
BaeGI GKGCMC 2 cut(s) 27, 44
BanII GRGCYC 2 cut(s) 27, 44
BbvI GCAGC 1 cut(s) 131
BccI CCATC 2 cut(s) 188, 212
BciVI GTATCC 1 cut(s) 240
BclI TGATCA 1 cut(s) 34
BfmI CTRYAG 1 cut(s) 249
BfuI GTATCC 1 cut(s) 240
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
BmgT120I GGNCC 4 cut(s) 23, 24, 40, 41
BmiI GGNNCC 3 cut(s) 25, 26, 42
BplI GAGNNNNNCTC 2 cut(s) 132, 164
BsaWI WCCGGW 1 cut(s) 55
Bse3DI GCAATG 1 cut(s) 160
BseMI GCAATG 1 cut(s) 160
BseSI GKGCMC 2 cut(s) 27, 44
BseXI GCAGC 1 cut(s) 131
BshFI GGCC 2 cut(s) 25, 42
BsiSI CCGG 1 cut(s) 56
BsnI GGCC 2 cut(s) 25, 42
Bsp120I GGGCCC 2 cut(s) 23, 40
Bsp1286I GDGCHC 2 cut(s) 27, 44
Bsp1407I TGTACA 1 cut(s) 183
Bsp143I GATC 2 cut(s) 34, 60
BspACI CCGC 1 cut(s) 151
BspANI GGCC 2 cut(s) 25, 42
BspLI GGNNCC 3 cut(s) 25, 26, 42
BspMAI CTGCAG 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 160
BsrGI TGTACA 1 cut(s) 183
BssMI GATC 2 cut(s) 34, 60
BstAUI TGTACA 1 cut(s) 183
BstKTI GATC 2 cut(s) 37, 63
BstMBI GATC 2 cut(s) 34, 60
BstNSI RCATGY 1 cut(s) 244
BstSFI CTRYAG 1 cut(s) 249
BstSLI GKGCMC 2 cut(s) 27, 44
BstV1I GCAGC 1 cut(s) 131
BsuI GTATCC 1 cut(s) 240
BsuRI GGCC 2 cut(s) 25, 42
Cfr13I GGNCC 4 cut(s) 23, 24, 40, 41
Csp6I GTAC 1 cut(s) 184
CviAII CATG 2 cut(s) 81, 241
CviJI RGCY 3 cut(s) 25, 42, 122
CviKI_1 RGCY 3 cut(s) 25, 42, 122
CviQI GTAC 1 cut(s) 184
DpnI GATC 2 cut(s) 36, 62
DpnII GATC 2 cut(s) 34, 60
Eco24I GRGCYC 2 cut(s) 27, 44
EcoO109I RGGNCCY 3 cut(s) 23, 24, 40
EcoT38I GRGCYC 2 cut(s) 27, 44
FaeI CATG 2 cut(s) 84, 244
FaiI YATR 4 cut(s) 8, 16, 82, 242
FatI CATG 2 cut(s) 80, 240
FbaI TGATCA 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 120
FriOI GRGCYC 2 cut(s) 27, 44
Fsp4HI GCNGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 120
HaeIII GGCC 2 cut(s) 25, 42
HapII CCGG 1 cut(s) 56
Hin1II CATG 2 cut(s) 84, 244
HinfI GANTC 1 cut(s) 98
HpaII CCGG 1 cut(s) 56
HphI GGTGA 1 cut(s) 85
Hpy188III TCNNGA 1 cut(s) 128
HpyCH4V TGCA 2 cut(s) 244, 251
Hsp92II CATG 2 cut(s) 84, 244
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 2 cut(s) 34, 60
LpnPI CCDG 3 cut(s) 23, 69, 249
Lsp1109I GCAGC 1 cut(s) 131
MalI GATC 2 cut(s) 36, 62
MboI GATC 2 cut(s) 34, 60
MboII GAAGA 1 cut(s) 155
MhlI GDGCHC 2 cut(s) 27, 44
MluCI AATT 1 cut(s) 30
MnlI CCTC 1 cut(s) 64
MroXI GAANNNNTTC 1 cut(s) 97
MseI TTAA 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 1 cut(s) 56
NdeII GATC 2 cut(s) 34, 60
NlaIII CATG 2 cut(s) 84, 244
NlaIV GGNNCC 3 cut(s) 25, 26, 42
NspI RCATGY 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 1 cut(s) 121
PsiI TTATAA 1 cut(s) 8
PspN4I GGNNCC 3 cut(s) 25, 26, 42
PspOMI GGGCCC 2 cut(s) 23, 40
PspPI GGNCC 4 cut(s) 23, 24, 40, 41
PstI CTGCAG 1 cut(s) 253
PvuII CAGCTG 1 cut(s) 122
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 2 cut(s) 34, 60
Sau96I GGNCC 4 cut(s) 23, 24, 40, 41
SduI GDGCHC 2 cut(s) 27, 44
SetI ASST 2 cut(s) 75, 124
SfcI CTRYAG 1 cut(s) 249
SgeI CNNG 9 cut(s) 50, 68, 93, 122, 140, 176, 189, 248, 253
Sse9I AATT 1 cut(s) 30
SsiI CCGC 1 cut(s) 151
TasI AATT 1 cut(s) 30
TatI WGTACW 1 cut(s) 183
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TseI GCWGC 1 cut(s) 119
XceI RCATGY 1 cut(s) 244
XmnI GAANNNNTTC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.