Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000220

Physical Location & Seq

Genomic Coordinates Forward (+)

29071125 .. 29072932

Gene Structure 1808 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018385

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCTTCTACTGGTGCAATTTATTATTGCTCTATGTATTCCGGCCTCCTCCTCAAGGAACACCTTTGCTTCTATCGATCTGATCTGGCTTGGAGGAGTTCCAATTGGTAGTGATGGTGGATCTGCTCGCGATCGGATGACTTGTGTTTGTGTTGGCTGTAGTAGCCTGGATCTGGGATTGGTTGATTTCCAGCCCGGATCTGTGATTGGCCAGGTTGTGATGACTGGAGGGCCAAAATTTAGGGCGATGATGCCGACGACCCGAGTACTCGCTTTCGCTACGGCTCCGGTGGGTTCCCTTAACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGAGGTCAGAGCCCAATGCTCCTCCCACTGCTTGGGAGCTTACGGGTGGTGGCAACAGCGGCGTGGGGGCGGTGGTATGTGCTGGTGGCAACGGCGATGGTAGGGGTGGTGGCAATCCGAGGACGGTGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009941 GO:0009987 GO:0010109 GO:0010205 GO:0016053 GO:0019222 GO:0019752 GO:0019904 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0032787 GO:0042548 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043467 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0072330 GO:1901576 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko02020 map02020

Pfam Domains

Protein Families

FA_desaturase

Protein Analysis

160

Amino Acids

15.94

Weight (kDa)

6.52

Isoelectric Point (pI)

31.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000220)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14882 FvH4_1g25271 FvH4_2g02251 FvH4_2g02251 FvH4_2g12511 FvH4_3g12392 FvH4_4g13981 FvH4_5g27011 FvH4_5g27012 FvH4_6g04722 FvH4_6g19751 FvH4_6g31371 FvH4_6g35011 FvH4_7g02741 FvH4_7g02741 FvH4_7g11332
malus_domestica	MD00G1003900.v1.1 MD00G1004000.v1.1 MD10G1094800.v1.1 MD13G1044700.v1.1 MD13G1176700.v1.1 MD15G1343300.v1.1 MD15G1444800.v1.1
prunus_persica	Prupe.1G199600_v2.0.a1 Prupe.1G215800_v2.0.a1 Prupe.3G104200_v2.0.a1
pyrus_communis	pycom06g06750 pycom08g00120 pycom08g00130 pycom10g02160 pycom11g16040 pycom11g16050 pycom11g17730 pycom15g19390 pycom15g25050 pycom15g25060 pycom16g24700 pycom16g24710 pycom5153684g00040
rosa_chinensis	RchiOBHm_Chr1g0361971 RchiOBHm_Chr1g0383751 RchiOBHm_Chr2g0121831 RchiOBHm_Chr2g0121841 RchiOBHm_Chr2g0168971 RchiOBHm_Chr4g0384811 RchiOBHm_Chr4g0385621 RchiOBHm_Chr5g0012611 RchiOBHm_Chr6g0271241 RchiOBHm_Chr6g0289011 RchiOBHm_Chr7g0216171 RchiOBHm_Chr7g0216181 RchiOBHm_Chr7g0239421
rosa_laevigata	RLG00000001765 RLG00000002860 RLG00000003609 RLG00000004743 RLG00000018385 RLG00000022782 RLG00000024093 RLG00000035412
rosa_multiflora	Rmu_sc0000239.1_g000042 Rmu_sc0000292.1_g000005 Rmu_sc0000414.1_g000004 Rmu_sc0000441.1_g000099 Rmu_sc0000578.1_g000002 Rmu_sc0000666.1_g000019 Rmu_sc0000690.1_g000008 Rmu_sc0000821.1_g000011 Rmu_sc0001068.1_g000021 Rmu_sc0001696.1_g000017 Rmu_sc0001851.1_g000006 Rmu_sc0001940.1_g000018 Rmu_sc0002322.1_g000025 Rmu_sc0002343.1_g000030 Rmu_sc0002351.1_g000020 Rmu_sc0002371.1_g000025 Rmu_sc0002530.1_g000003 Rmu_sc0003206.1_g000001 Rmu_sc0003556.1_g000020 Rmu_sc0003906.1_g000002 Rmu_sc0004122.1_g000002 Rmu_sc0004283.1_g000013 Rmu_sc0004657.1_g000053 Rmu_sc0004657.1_g000054 Rmu_sc0004920.1_g000006 Rmu_sc0004990.1_g000001 Rmu_sc0005046.1_g000011 Rmu_sc0005134.1_g000006 Rmu_sc0005281.1_g000004 Rmu_sc0005704.1_g000010 Rmu_sc0005767.1_g000009 Rmu_sc0005789.1_g000031 Rmu_sc0005849.1_g000010 Rmu_sc0006736.1_g000020 Rmu_sc0006754.1_g000001 Rmu_sc0007663.1_g000010 Rmu_sc0007705.1_g000005 Rmu_sc0007883.1_g000003 Rmu_sc0007941.1_g000003 Rmu_sc0009618.1_g000009 Rmu_sc0009840.1_g000007 Rmu_sc0010800.1_g000007 Rmu_sc0011620.1_g000005 Rmu_sc0013423.1_g000002 Rmu_sc0014544.1_g000001 Rmu_sc0015323.1_g000004 Rmu_sc0023737.1_g000001 Rmu_sc0024470.1_g000005 Rmu_sc0032114.1_g000001 Rmu_ssc0000372.1_g000050 Rmu_ssc0000420.1_g000006
rosa_roxburghii	Rroxscaffold_1G00014580 Rroxscaffold_1G00050290 Rroxscaffold_2G00093920 Rroxscaffold_2G00131720 Rroxscaffold_5G00351350 Rroxscaffold_5G00386210 Rroxscaffold_6G00392840 Rroxscaffold_6G00404480 Rroxscaffold_6G00405300
rosa_rugosa	Rorug02G0533800 Rorug03G0200600 Rorug05G0329600 Rorug07G0139200 Rorug07G0341500 Rorug07G0341600 Rorug07G0341700 Rorug07G0341800
rosa_samantha	Rh2BG114900 Rh2BG222900 Rh2DG253700 Rh3CG200000 Rh4BG186200 Rh4DG156200 Rh5AG145800 Rh5BG370600 Rh6AG123800 Rh6BG424900 Rh6DG105300 Rh7AG381900 Rh7CG288100 Rh7CG401400
rosa_wichuraiana	Rw0G008270 Rw1G014540 Rw2G043790 Rw6G021690 Rw7G030100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	378
AccII	CGCG	1 cut(s)	129
AciI	CCGC	2 cut(s)	405, 416
AclWI	GGATC	3 cut(s)	127, 177, 205
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	236
AfaI	GTAC	1 cut(s)	267
AfiI	CCNNNNNNNGG	3 cut(s)	54, 172, 378
AgsI	TTSAA	1 cut(s)	339
AjnI	CCWGG	2 cut(s)	165, 210
AluBI	AGCT	1 cut(s)	385
AluI	AGCT	1 cut(s)	385
AlwI	GGATC	3 cut(s)	127, 177, 205
Ama87I	CYCGRG	1 cut(s)	261
AoxI	GGCC	3 cut(s)	42, 208, 230
ApoI	RAATTY	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	230
AsuC2I	CCSGG	1 cut(s)	195
AvaI	CYCGRG	1 cut(s)	261
BalI	TGGCCA	1 cut(s)	210
BanII	GRGCYC	1 cut(s)	360
BauI	CACGAG	1 cut(s)	346
BccI	CCATC	2 cut(s)	107, 437
BceAI	ACGGC	2 cut(s)	297, 454
BciT130I	CCWGG	2 cut(s)	167, 212
BcnI	CCSGG	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	157
BisI	GCNGC	1 cut(s)	406
BlsI	GCNGC	1 cut(s)	407
BmcAI	AGTACT	1 cut(s)	267
Bme1390I	CCNGG	3 cut(s)	167, 195, 212
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	2 cut(s)	285, 295
BmrFI	CCNGG	3 cut(s)	167, 195, 212
BmsI	GCATC	1 cut(s)	240
BpmI	CTGGAG	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	195
Bsa29I	ATCGAT	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	464
BsaWI	WCCGGW	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 172, 378
Bse118I	RCCGGY	1 cut(s)	325
Bse1I	ACTGG	2 cut(s)	15, 229
BseBI	CCWGG	2 cut(s)	167, 212
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	464
BseGI	GGATG	1 cut(s)	141
BseLI	CCNNNNNNNGG	3 cut(s)	54, 172, 378
BseNI	ACTGG	2 cut(s)	15, 229
BseRI	GAGGAG	4 cut(s)	37, 40, 108, 357
Bsh1236I	CGCG	1 cut(s)	129
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	3 cut(s)	44, 210, 232
BshVI	ATCGAT	1 cut(s)	75
BsiEI	CGRYCG	1 cut(s)	133
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	4 cut(s)	41, 195, 287, 326
BslI	CCNNNNNNNGG	3 cut(s)	54, 172, 378
BsnI	GGCC	3 cut(s)	44, 210, 232
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	6 cut(s)	76, 81, 119, 130, 169, 197
Bsp68I	TCGCGA	1 cut(s)	129
BspACI	CCGC	2 cut(s)	405, 416
BspANI	GGCC	3 cut(s)	44, 210, 232
BspDI	ATCGAT	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	285, 295
BspPI	GGATC	3 cut(s)	127, 177, 205
BsrFI	RCCGGY	1 cut(s)	325
BsrI	ACTGG	2 cut(s)	15, 229
BssAI	RCCGGY	1 cut(s)	325
BssECI	CCNNGG	1 cut(s)	464
BssMI	GATC	6 cut(s)	76, 81, 119, 130, 169, 197
BssSI	CACGAG	1 cut(s)	346
Bst2BI	CACGAG	1 cut(s)	346
Bst2UI	CCWGG	2 cut(s)	167, 212
Bst4CI	ACNGT	1 cut(s)	472
BstC8I	GCNNGC	2 cut(s)	127, 327
BstENI	CCTNNNNNAGG	1 cut(s)	52
BstF5I	GGATG	1 cut(s)	141
BstFNI	CGCG	1 cut(s)	129
BstKTI	GATC	6 cut(s)	79, 84, 122, 133, 172, 200
BstMBI	GATC	6 cut(s)	76, 81, 119, 130, 169, 197
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 405
BstNI	CCWGG	2 cut(s)	167, 212
BstSCI	CCNGG	3 cut(s)	165, 193, 210
BstSFI	CTRYAG	1 cut(s)	157
BstUI	CGCG	1 cut(s)	129
BstX2I	RGATCY	3 cut(s)	119, 169, 197
BstYI	RGATCY	3 cut(s)	119, 169, 197
Bsu15I	ATCGAT	1 cut(s)	75
BsuRI	GGCC	3 cut(s)	44, 210, 232
BsuTUI	ATCGAT	1 cut(s)	75
BtgZI	GCGATG	2 cut(s)	260, 456
BtsCI	GGATG	1 cut(s)	141
BtsI	GCAGTG	2 cut(s)	309, 372
BtsIMutI	CAGTG	2 cut(s)	309, 372
BtuMI	TCGCGA	1 cut(s)	129
Cac8I	GCNNGC	2 cut(s)	127, 327
Cfr10I	RCCGGY	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	230
ClaI	ATCGAT	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	266
CviQI	GTAC	1 cut(s)	266
DpnI	GATC	6 cut(s)	78, 83, 121, 132, 171, 199
DpnII	GATC	6 cut(s)	76, 81, 119, 130, 169, 197
EaeI	YGGCCR	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	360
Eco88I	CYCGRG	1 cut(s)	261
EcoNI	CCTNNNNNAGG	1 cut(s)	52
EcoRII	CCWGG	2 cut(s)	165, 210
EcoT38I	GRGCYC	1 cut(s)	360
FaiI	YATR	3 cut(s)	34, 318, 424
Fnu4HI	GCNGC	1 cut(s)	406
FokI	GGATG	1 cut(s)	148
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	1 cut(s)	406
GluI	GCNGC	1 cut(s)	406
GsuI	CTGGAG	1 cut(s)	246
HaeIII	GGCC	3 cut(s)	44, 210, 232
HapII	CCGG	4 cut(s)	41, 195, 287, 326
HinfI	GANTC	1 cut(s)	320
HpaII	CCGG	4 cut(s)	41, 195, 287, 326
Hpy188I	TCNGA	4 cut(s)	81, 135, 355, 465
Hpy188III	TCNNGA	1 cut(s)	128
Hpy99I	CGWCG	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	472
HpyCH4V	TGCA	1 cut(s)	16
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 405
KroI	GCCGGC	1 cut(s)	325
KroNI	GCCGGC	1 cut(s)	327
Kzo9I	GATC	6 cut(s)	76, 81, 119, 130, 169, 197
LmnI	GCTCC	3 cut(s)	289, 370, 382
LweI	GCATC	1 cut(s)	240
MalI	GATC	6 cut(s)	78, 83, 121, 132, 171, 199
MboI	GATC	6 cut(s)	76, 81, 119, 130, 169, 197
MboII	GAAGA	1 cut(s)	327
MfeI	CAATTG	1 cut(s)	102
MflI	RGATCY	3 cut(s)	119, 169, 197
MhlI	GDGCHC	1 cut(s)	360
MlsI	TGGCCA	1 cut(s)	210
MluCI	AATT	3 cut(s)	17, 102, 236
MluNI	TGGCCA	1 cut(s)	210
MlyI	GAGTC	1 cut(s)	329
MnlI	CCTC	8 cut(s)	55, 58, 61, 86, 221, 342, 378, 459
Mox20I	TGGCCA	1 cut(s)	210
MroNI	GCCGGC	1 cut(s)	325
MscI	TGGCCA	1 cut(s)	210
MseI	TTAA	1 cut(s)	300
Msp20I	TGGCCA	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	405
MspI	CCGG	4 cut(s)	41, 195, 287, 326
MspR9I	CCNGG	3 cut(s)	167, 195, 212
MunI	CAATTG	1 cut(s)	102
MvaI	CCWGG	2 cut(s)	167, 212
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	162, 405
NaeI	GCCGGC	1 cut(s)	327
NciI	CCSGG	1 cut(s)	195
NdeII	GATC	6 cut(s)	76, 81, 119, 130, 169, 197
NgoMIV	GCCGGC	1 cut(s)	325
NlaIV	GGNNCC	2 cut(s)	285, 295
NruI	TCGCGA	1 cut(s)	129
PdiI	GCCGGC	1 cut(s)	327
PflMI	CCANNNNNTGG	1 cut(s)	378
PkrI	GCNGC	1 cut(s)	407
Ple19I	CGATCG	1 cut(s)	133
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
Psp6I	CCWGG	2 cut(s)	165, 210
PspGI	CCWGG	2 cut(s)	165, 210
PspN4I	GGNNCC	2 cut(s)	285, 295
PspPI	GGNCC	1 cut(s)	230
PsuI	RGATCY	3 cut(s)	119, 169, 197
PvuI	CGATCG	1 cut(s)	133
RruI	TCGCGA	1 cut(s)	129
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	1 cut(s)	406
Sau3AI	GATC	6 cut(s)	76, 81, 119, 130, 169, 197
Sau96I	GGNCC	1 cut(s)	230
ScaI	AGTACT	1 cut(s)	267
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	3 cut(s)	167, 195, 212
SduI	GDGCHC	1 cut(s)	360
SetI	ASST	4 cut(s)	65, 216, 353, 387
SfaNI	GCATC	1 cut(s)	240
SfcI	CTRYAG	1 cut(s)	157
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	3 cut(s)	17, 102, 236
SsiI	CCGC	2 cut(s)	405, 416
StyD4I	CCNGG	3 cut(s)	165, 193, 210
TaaI	ACNGT	1 cut(s)	472
TaqI	TCGA	1 cut(s)	75
TasI	AATT	3 cut(s)	17, 102, 236
TatI	WGTACW	1 cut(s)	265
TauI	GCSGC	1 cut(s)	408
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	2 cut(s)	316, 379
TspRI	CASTG	2 cut(s)	316, 379
Van91I	CCANNNNNTGG	1 cut(s)	378
XagI	CCTNNNNNAGG	1 cut(s)	52
XapI	RAATTY	1 cut(s)	236
ZrmI	AGTACT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.