Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008867

Physical Location & Seq

Genomic Coordinates Reverse (-)

37611762 .. 37612610

Gene Structure 849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0341300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCTAGAAGGAAGGTGAGACTGCACTACGTTGCCAATGAGAGTTCCCGACGAACGACATTTAGAAAAAGAAAGAAGGGTCTTCTGAAGAAGGTGGGAGAGATAACCACTCTCTGTGACATCAAGGCCGCGGTGATCATCTACAACCCTTTTGATGGCGAGCCGGAGGTGTTCCCAAGTCTTCCGGAAGTCAACGAACTGCTGACGAAGTTCCGAGATATGCCGCAGATGGACAAGACAAGAAAGATGGTCGACCAGGAGACATTCTTAATACAACGAATCGACAAAGTCCGGGAGCAGATCAGAAAGCTGAAAAGAGACAACCGAGAAAAAGAGATCACTCAAGTCATGTTCGGTTGTTTGAAGGGGAGAACACTCTCTGACCTGGAAATGAAGGATCTGCAAGACCTCAATTTTATCATCGAACGCAACCTCAGGGAACTTGAAATCAAACAACGGGCTACCGATGAGCAGAAGCAGGAGGAAAACCAGGAGAACCAGCTCAACCAGGTGCAAGCTGAATCGATTGCGGTGGAGCTCGGCCTGACGACGAGGAATGCATTTGGGGAGGGAACTAGCAGAGGCGTGCAGCAACAACACCACCAACCCGCGATGGAGGCGCAGAGCATGGAGCAGTGGCAGTACCAAATGATGCAGGTTGCAGCTCAGAGGCAGCAACATCAGCAGTTGTTCCAGCAACAACCCTGGTTCCTGGACATCATGAACCCACCACCGCCCCAAATGAGGGACTTCTTGCACCCACTACCACCGCTTCAGCGAGGAGGGTTCAGAGACTATAACAGTGACAATGCTACATGCCCAAACAACTCTTCATTTCGTTTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

282

Amino Acids

33.26

Weight (kDa)

9.08

Isoelectric Point (pI)

52.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	11 - 53	2.7e-15	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g39060 FvH4_5g39060
malus_domestica	MD00G1140800.v1.1 MD03G1292900.v1.1
prunus_persica	Prupe.8G265900_v2.0.a1 Prupe.8G265900_v2.0.a1
pyrus_communis	pycom03g23220 pycom11g27360
rosa_chinensis	RchiOBHm_Chr7g0241021 RchiOBHm_Chr7g0241041
rosa_laevigata	RLG00000000603
rosa_multiflora	Rmu_sc0003187.1_g000008
rosa_roxburghii	Rroxscaffold_3G00219310
rosa_rugosa	Rorug07G0341300 Rorug07G0341400 Rorug07G0341500
rosa_samantha	Rh7AG496600 Rh7AG497100 Rh7BG467800 Rh7CG513800 Rh7DG481000
rosa_wichuraiana	Rw0G005810 Rw7G041940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	646
AccI	GTMKAC	1 cut(s)	252
AccII	CGCG	2 cut(s)	131, 611
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	7 cut(s)	129, 131, 224, 530, 609, 734, 770
AclWI	GGATC	1 cut(s)	405
AcuI	CTGAAG	2 cut(s)	107, 758
AfaI	GTAC	1 cut(s)	644
AfiI	CCNNNNNNNGG	3 cut(s)	155, 744, 745
AgsI	TTSAA	2 cut(s)	364, 446
AjnI	CCWGG	6 cut(s)	255, 384, 489, 507, 704, 711
AjuI	GAANNNNNNNTTGG	2 cut(s)	814, 846
AluBI	AGCT	5 cut(s)	310, 502, 518, 538, 665
AluI	AGCT	5 cut(s)	310, 502, 518, 538, 665
Alw21I	GWGCWC	1 cut(s)	540
Alw26I	GTCTC	4 cut(s)	13, 254, 312, 786
AlwI	GGATC	1 cut(s)	405
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	2 cut(s)	126, 541
ApeKI	GCWGC	3 cut(s)	589, 662, 673
AspLEI	GCGC	1 cut(s)	622
AsuC2I	CCSGG	1 cut(s)	293
AsuHPI	GGTGA	2 cut(s)	28, 145
AxyI	CCTNAGG	1 cut(s)	434
BanII	GRGCYC	1 cut(s)	540
BbsI	GAAGAC	2 cut(s)	74, 173
Bbv12I	GWGCWC	1 cut(s)	540
BbvI	GCAGC	3 cut(s)	601, 674, 685
BccI	CCATC	4 cut(s)	149, 223, 241, 607
BciT130I	CCWGG	6 cut(s)	257, 386, 491, 509, 706, 713
BclI	TGATCA	1 cut(s)	135
BcnI	CCSGG	1 cut(s)	293
BcoDI	GTCTC	4 cut(s)	13, 254, 312, 786
BfaI	CTAG	2 cut(s)	6, 576
BfuAI	ACCTGC	1 cut(s)	646
BisI	GCNGC	5 cut(s)	129, 224, 590, 663, 674
BlsI	GCNGC	5 cut(s)	130, 225, 591, 664, 675
Bme1390I	CCNGG	7 cut(s)	257, 293, 386, 491, 509, 706, 713
BmiI	GGNNCC	1 cut(s)	710
BmrFI	CCNGG	7 cut(s)	257, 293, 386, 491, 509, 706, 713
BmsI	GCATC	1 cut(s)	642
BpiI	GAAGAC	2 cut(s)	74, 173
BpuEI	CTTGAG	1 cut(s)	327
BpuMI	CCSGG	1 cut(s)	293
Bsa29I	ATCGAT	1 cut(s)	524
BsaJI	CCNNGG	2 cut(s)	129, 704
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 744, 745
Bse21I	CCTNAGG	1 cut(s)	434
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	6 cut(s)	257, 386, 491, 509, 706, 713
BseCI	ATCGAT	1 cut(s)	524
BseDI	CCNNGG	2 cut(s)	129, 704
BseLI	CCNNNNNNNGG	3 cut(s)	155, 744, 745
BseMII	CTCAG	2 cut(s)	448, 680
BseRI	GAGGAG	1 cut(s)	795
BseXI	GCAGC	3 cut(s)	601, 674, 685
BsgI	GTGCAG	2 cut(s)	8, 608
Bsh1236I	CGCG	2 cut(s)	131, 611
BshFI	GGCC	2 cut(s)	128, 543
BshVI	ATCGAT	1 cut(s)	524
BsiHKAI	GWGCWC	1 cut(s)	540
BsiSI	CCGG	3 cut(s)	164, 185, 292
BslFI	GGGAC	1 cut(s)	761
BslI	CCNNNNNNNGG	3 cut(s)	155, 744, 745
BsmAI	GTCTC	4 cut(s)	13, 254, 312, 786
BsmFI	GGGAC	1 cut(s)	761
BsmI	GAATGC	1 cut(s)	562
BsnI	GGCC	2 cut(s)	128, 543
Bsp1286I	GDGCHC	1 cut(s)	540
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	4 cut(s)	135, 300, 336, 397
BspACI	CCGC	7 cut(s)	129, 131, 224, 530, 609, 734, 770
BspANI	GGCC	2 cut(s)	128, 543
BspCNI	CTCAG	2 cut(s)	447, 679
BspDI	ATCGAT	1 cut(s)	524
BspEI	TCCGGA	1 cut(s)	184
BspFNI	CGCG	2 cut(s)	131, 611
BspHI	TCATGA	1 cut(s)	720
BspLI	GGNNCC	1 cut(s)	710
BspMI	ACCTGC	1 cut(s)	646
BspPI	GGATC	1 cut(s)	405
BssECI	CCNNGG	2 cut(s)	129, 704
BssMI	GATC	4 cut(s)	135, 300, 336, 397
Bst2UI	CCWGG	6 cut(s)	257, 386, 491, 509, 706, 713
Bst4CI	ACNGT	1 cut(s)	803
Bst6I	CTCTTC	1 cut(s)	835
BstC8I	GCNNGC	3 cut(s)	161, 516, 587
BstDEI	CTNAG	2 cut(s)	434, 666
BstDSI	CCRYGG	1 cut(s)	129
BstFNI	CGCG	2 cut(s)	131, 611
BstHHI	GCGC	1 cut(s)	622
BstKTI	GATC	4 cut(s)	138, 303, 339, 400
BstMAI	GTCTC	4 cut(s)	13, 254, 312, 786
BstMBI	GATC	4 cut(s)	135, 300, 336, 397
BstMWI	GCNNNNNNNGC	2 cut(s)	617, 682
BstNI	CCWGG	6 cut(s)	257, 386, 491, 509, 706, 713
BstNSI	RCATGY	1 cut(s)	819
BstSCI	CCNGG	7 cut(s)	255, 291, 384, 489, 507, 704, 711
BstUI	CGCG	2 cut(s)	131, 611
BstV1I	GCAGC	3 cut(s)	601, 674, 685
BstV2I	GAAGAC	2 cut(s)	74, 173
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
Bsu15I	ATCGAT	1 cut(s)	524
Bsu36I	CCTNAGG	1 cut(s)	434
BsuRI	GGCC	2 cut(s)	128, 543
BsuTUI	ATCGAT	1 cut(s)	524
BtgI	CCRYGG	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	626
BtsI	GCAGTG	1 cut(s)	641
BtsIMutI	CAGTG	2 cut(s)	641, 808
BveI	ACCTGC	1 cut(s)	646
Cac8I	GCNNGC	3 cut(s)	161, 516, 587
CciI	TCATGA	1 cut(s)	720
CfoI	GCGC	1 cut(s)	622
Cfr42I	CCGCGG	1 cut(s)	132
ClaI	ATCGAT	1 cut(s)	524
CsiI	ACCWGGT	1 cut(s)	507
Csp6I	GTAC	1 cut(s)	643
CviAII	CATG	4 cut(s)	349, 628, 721, 816
CviQI	GTAC	1 cut(s)	643
DdeI	CTNAG	2 cut(s)	434, 666
DpnI	GATC	4 cut(s)	137, 302, 338, 399
DpnII	GATC	4 cut(s)	135, 300, 336, 397
Eam1104I	CTCTTC	1 cut(s)	835
EarI	CTCTTC	1 cut(s)	835
Ecl136II	GAGCTC	1 cut(s)	538
Eco24I	GRGCYC	1 cut(s)	540
Eco53kI	GAGCTC	1 cut(s)	538
Eco57I	CTGAAG	2 cut(s)	107, 758
Eco81I	CCTNAGG	1 cut(s)	434
EcoICRI	GAGCTC	1 cut(s)	538
EcoRII	CCWGG	6 cut(s)	255, 384, 489, 507, 704, 711
EcoT22I	ATGCAT	1 cut(s)	562
EcoT38I	GRGCYC	1 cut(s)	540
FaeI	CATG	4 cut(s)	352, 631, 724, 819
FaiI	YATR	6 cut(s)	221, 350, 629, 722, 798, 817
FaqI	GGGAC	1 cut(s)	761
FatI	CATG	4 cut(s)	348, 627, 720, 815
FauI	CCCGC	1 cut(s)	616
FbaI	TGATCA	1 cut(s)	135
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	5 cut(s)	129, 224, 590, 663, 674
FriOI	GRGCYC	1 cut(s)	540
Fsp4HI	GCNGC	5 cut(s)	129, 224, 590, 663, 674
FspBI	CTAG	2 cut(s)	6, 576
GlaI	GCGC	1 cut(s)	621
GluI	GCNGC	5 cut(s)	129, 224, 590, 663, 674
HaeIII	GGCC	2 cut(s)	128, 543
HapII	CCGG	3 cut(s)	164, 185, 292
HhaI	GCGC	1 cut(s)	622
Hin1II	CATG	4 cut(s)	352, 631, 724, 819
Hin6I	GCGC	1 cut(s)	620
HinP1I	GCGC	1 cut(s)	620
HincII	GTYRAC	2 cut(s)	193, 253
HindII	GTYRAC	2 cut(s)	193, 253
HinfI	GANTC	2 cut(s)	279, 521
HpaII	CCGG	3 cut(s)	164, 185, 292
HphI	GGTGA	2 cut(s)	28, 145
Hpy166II	GTNNAC	2 cut(s)	193, 253
Hpy188I	TCNGA	6 cut(s)	87, 215, 305, 382, 669, 791
Hpy188III	TCNNGA	3 cut(s)	48, 185, 721
Hpy8I	GTNNAC	2 cut(s)	193, 253
Hpy99I	CGWCG	2 cut(s)	54, 553
HpyAV	CCTTC	6 cut(s)	3, 7, 70, 85, 358, 388
HpyCH4III	ACNGT	1 cut(s)	803
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	8 cut(s)	25, 403, 514, 560, 589, 655, 662, 757
HpyF10VI	GCNNNNNNNGC	2 cut(s)	617, 682
HpyF3I	CTNAG	2 cut(s)	434, 666
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	4 cut(s)	352, 631, 724, 819
HspAI	GCGC	1 cut(s)	620
Kpn2I	TCCGGA	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	135
KspI	CCGCGG	1 cut(s)	132
Kzo9I	GATC	4 cut(s)	135, 300, 336, 397
LmnI	GCTCC	3 cut(s)	295, 535, 631
Lsp1109I	GCAGC	3 cut(s)	601, 674, 685
LweI	GCATC	1 cut(s)	642
MabI	ACCWGGT	1 cut(s)	507
MaeI	CTAG	2 cut(s)	6, 576
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	116, 803
MalI	GATC	4 cut(s)	137, 302, 338, 399
MboI	GATC	4 cut(s)	135, 300, 336, 397
MboII	GAAGA	4 cut(s)	74, 100, 173, 822
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	1 cut(s)	540
MluCI	AATT	1 cut(s)	412
Mph1103I	ATGCAT	1 cut(s)	562
MroI	TCCGGA	1 cut(s)	184
MseI	TTAA	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	3 cut(s)	164, 185, 292
MspR9I	CCNGG	7 cut(s)	257, 293, 386, 491, 509, 706, 713
Mva1269I	GAATGC	1 cut(s)	562
MvaI	CCWGG	6 cut(s)	257, 386, 491, 509, 706, 713
MvnI	CGCG	2 cut(s)	131, 611
MwoI	GCNNNNNNNGC	2 cut(s)	617, 682
NciI	CCSGG	1 cut(s)	293
NdeII	GATC	4 cut(s)	135, 300, 336, 397
NlaIII	CATG	4 cut(s)	352, 631, 724, 819
NlaIV	GGNNCC	1 cut(s)	710
NmeAIII	GCCGAG	1 cut(s)	519
NmuCI	GTSAC	2 cut(s)	116, 803
NsiI	ATGCAT	1 cut(s)	562
NspI	RCATGY	1 cut(s)	819
PagI	TCATGA	1 cut(s)	720
PctI	GAATGC	1 cut(s)	562
PfeI	GAWTC	2 cut(s)	279, 521
PflFI	GACNNNGTC	1 cut(s)	287
PfoI	TCCNGGA	2 cut(s)	291, 711
PkrI	GCNGC	5 cut(s)	130, 225, 591, 664, 675
Psp124BI	GAGCTC	1 cut(s)	540
Psp6I	CCWGG	6 cut(s)	255, 384, 489, 507, 704, 711
PspGI	CCWGG	6 cut(s)	255, 384, 489, 507, 704, 711
PspN4I	GGNNCC	1 cut(s)	710
PsuI	RGATCY	1 cut(s)	397
PsyI	GACNNNGTC	1 cut(s)	287
RsaI	GTAC	1 cut(s)	644
RsaNI	GTAC	1 cut(s)	643
SacI	GAGCTC	1 cut(s)	540
SacII	CCGCGG	1 cut(s)	132
SalI	GTCGAC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	269
SatI	GCNGC	5 cut(s)	129, 224, 590, 663, 674
Sau3AI	GATC	4 cut(s)	135, 300, 336, 397
ScrFI	CCNGG	7 cut(s)	257, 293, 386, 491, 509, 706, 713
SduI	GDGCHC	1 cut(s)	540
SexAI	ACCWGGT	1 cut(s)	507
SfaNI	GCATC	1 cut(s)	642
Sfr303I	CCGCGG	1 cut(s)	132
SgrBI	CCGCGG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	342
SmoI	CTYRAG	1 cut(s)	342
Sse9I	AATT	1 cut(s)	412
SsiI	CCGC	7 cut(s)	129, 131, 224, 530, 609, 734, 770
SspMI	CTAG	2 cut(s)	6, 576
SstI	GAGCTC	1 cut(s)	540
StyD4I	CCNGG	7 cut(s)	255, 291, 384, 489, 507, 704, 711
TaaI	ACNGT	1 cut(s)	803
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	4 cut(s)	252, 282, 423, 524
TasI	AATT	1 cut(s)	412
TauI	GCSGC	2 cut(s)	131, 226
TfiI	GAWTC	2 cut(s)	279, 521
Tru1I	TTAA	1 cut(s)	269
Tru9I	TTAA	1 cut(s)	269
TscAI	CASTG	2 cut(s)	641, 808
TseFI	GTSAC	2 cut(s)	116, 803
TseI	GCWGC	3 cut(s)	589, 662, 673
Tsp45I	GTSAC	2 cut(s)	116, 803
TspDTI	ATGAA	3 cut(s)	407, 737, 822
TspRI	CASTG	2 cut(s)	641, 808
Tth111I	GACNNNGTC	1 cut(s)	287
XceI	RCATGY	1 cut(s)	819
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	2 cut(s)	6, 576
Zsp2I	ATGCAT	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.