Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008867

Physical Location & Seq

Genomic Coordinates Reverse (-)

23125572 .. 23126769

Gene Structure 1198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g23220.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGATGCAACCCTCTCTCCAGAACCCGACTCAGATGTTTCAAAGGAGCTCAGGCCAGAAACTCAGTCATCCAAAAGAAGGAAGTTGGCTCATGAGAAGACTGTTGTGACAGTGAAGATAGGAGCTAATGTTGGGAAGCTAAAGAATGAAGGGCCGCCTTCTGATCTTTGGTCATGGAGGAAATATGGCCAAAAACCCATCAAAGGATCTCCTTATCCAAGGGGATATTACCGTTGCAGTACATCGAAGGGTTGCTCGGCAAAAAAACAGGTGGAGAGAAGCAAAACTGATGCTTCAGTACTCATAATCACCTACACTTGTAGCCACAATCATTCAGGTCCTCCTGATGTGAATGTGATCGATCCACCACCCAACAAGAACATGATCAAAAGCAAGAACAAGAACAGGAACAGGAACAGGAACAGGAACAAGAACAAGAACAGGATCAAAAGCAAGATCAAAAGCAAGAACAAGAACAAGAACATCGGAAATTGGAAGAACACTTCCACTACATCGAGTCCCCAGTCAGATCTTCCCGGGAAGAAGAACACATTTTTATTGCTCACGACACGAGTTTTGGGTTCCTGTTGGATGAAAAGCAAGAGCCACTATCACTATCATATTCTCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

211

Amino Acids

23.77

Weight (kDa)

10.28

Isoelectric Point (pI)

55.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g39060 FvH4_5g39060
malus_domestica	MD00G1140800.v1.1 MD03G1292900.v1.1
prunus_persica	Prupe.8G265900_v2.0.a1 Prupe.8G265900_v2.0.a1
pyrus_communis	pycom03g23220 pycom11g27360
rosa_chinensis	RchiOBHm_Chr7g0241021 RchiOBHm_Chr7g0241041
rosa_laevigata	RLG00000000603
rosa_multiflora	Rmu_sc0003187.1_g000008
rosa_roxburghii	Rroxscaffold_3G00219310
rosa_rugosa	Rorug07G0341300 Rorug07G0341400 Rorug07G0341500
rosa_samantha	Rh7AG496600 Rh7AG497100 Rh7BG467800 Rh7CG513800 Rh7DG481000
rosa_wichuraiana	Rw0G005810 Rw7G041940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	155
AclWI	GGATC	3 cut(s)	214, 356, 452
AcoI	YGGCCR	1 cut(s)	187
AcuI	CTGAAG	1 cut(s)	279
AfaI	GTAC	2 cut(s)	241, 300
AfiI	CCNNNNNNNGG	2 cut(s)	78, 203
AgsI	TTSAA	1 cut(s)	42
AluBI	AGCT	4 cut(s)	49, 125, 139, 630
AluI	AGCT	4 cut(s)	49, 125, 139, 630
Alw21I	GWGCWC	1 cut(s)	51
AlwI	GGATC	3 cut(s)	214, 356, 452
Ama87I	CYCGRG	1 cut(s)	536
AoxI	GGCC	3 cut(s)	53, 152, 187
ArsI	GACNNNNNNTTYG	2 cut(s)	559, 591
AspS9I	GGNCC	2 cut(s)	152, 338
AsuC2I	CCSGG	2 cut(s)	537, 538
AsuHPI	GGTGA	1 cut(s)	301
AvaI	CYCGRG	1 cut(s)	536
AvaII	GGWCC	1 cut(s)	338
BalI	TGGCCA	1 cut(s)	189
BanII	GRGCYC	1 cut(s)	51
BauI	CACGAG	1 cut(s)	570
BbsI	GAAGAC	1 cut(s)	104
Bbv12I	GWGCWC	1 cut(s)	51
BccI	CCATC	1 cut(s)	206
BclI	TGATCA	1 cut(s)	384
BcnI	CCSGG	2 cut(s)	537, 538
BglII	AGATCT	1 cut(s)	529
BisI	GCNGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	156
BmcAI	AGTACT	1 cut(s)	300
Bme1390I	CCNGG	2 cut(s)	537, 538
Bme18I	GGWCC	1 cut(s)	338
BmeT110I	CYCGRG	1 cut(s)	536
BmgT120I	GGNCC	2 cut(s)	152, 338
BmiI	GGNNCC	1 cut(s)	583
BmrFI	CCNGG	2 cut(s)	537, 538
BmrI	ACTGGG	1 cut(s)	517
BmsI	GCATC	1 cut(s)	280
BmuI	ACTGGG	1 cut(s)	517
BpiI	GAAGAC	1 cut(s)	104
Bpu10I	CCTNAGC	1 cut(s)	50
BpuMI	CCSGG	2 cut(s)	537, 538
Bsa29I	ATCGAT	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	218, 536
BsaXI	ACNNNNNCTCC	3 cut(s)	31, 114, 144
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 203
Bse1I	ACTGG	1 cut(s)	523
BseCI	ATCGAT	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	218, 536
BseGI	GGATG	3 cut(s)	10, 68, 597
BseLI	CCNNNNNNNGG	2 cut(s)	78, 203
BseMII	CTCAG	3 cut(s)	45, 64, 77
BseNI	ACTGG	1 cut(s)	523
BshFI	GGCC	3 cut(s)	55, 154, 189
BshVI	ATCGAT	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	536
BsiSI	CCGG	1 cut(s)	537
BslFI	GGGAC	1 cut(s)	504
BslI	CCNNNNNNNGG	2 cut(s)	78, 203
BsmFI	GGGAC	1 cut(s)	504
BsnI	GGCC	3 cut(s)	55, 154, 189
BsoBI	CYCGRG	1 cut(s)	536
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	8 cut(s)	163, 206, 357, 361, 384, 444, 456, 529
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	3 cut(s)	55, 154, 189
BspCNI	CTCAG	3 cut(s)	44, 63, 76
BspDI	ATCGAT	1 cut(s)	360
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	583
BspPI	GGATC	3 cut(s)	214, 356, 452
BsrI	ACTGG	1 cut(s)	523
BssECI	CCNNGG	2 cut(s)	218, 536
BssMI	GATC	8 cut(s)	163, 206, 357, 361, 384, 444, 456, 529
BssSI	CACGAG	1 cut(s)	570
BssT1I	CCWWGG	1 cut(s)	218
Bst2BI	CACGAG	1 cut(s)	570
Bst4CI	ACNGT	3 cut(s)	103, 112, 233
BstDEI	CTNAG	4 cut(s)	31, 50, 63, 626
BstF5I	GGATG	3 cut(s)	10, 68, 597
BstKTI	GATC	8 cut(s)	166, 209, 360, 364, 387, 447, 459, 532
BstMBI	GATC	8 cut(s)	163, 206, 357, 361, 384, 444, 456, 529
BstSCI	CCNGG	2 cut(s)	535, 536
BstV2I	GAAGAC	1 cut(s)	104
BstX2I	RGATCY	2 cut(s)	206, 529
BstYI	RGATCY	2 cut(s)	206, 529
Bsu15I	ATCGAT	1 cut(s)	360
BsuRI	GGCC	3 cut(s)	55, 154, 189
BsuTUI	ATCGAT	1 cut(s)	360
BtsCI	GGATG	3 cut(s)	10, 68, 597
BtsIMutI	CAGTG	1 cut(s)	117
CciI	TCATGA	1 cut(s)	91
Cfr13I	GGNCC	2 cut(s)	152, 338
Cfr9I	CCCGGG	1 cut(s)	536
ClaI	ATCGAT	1 cut(s)	360
Csp6I	GTAC	2 cut(s)	240, 299
CviAII	CATG	3 cut(s)	92, 174, 382
CviQI	GTAC	2 cut(s)	240, 299
DdeI	CTNAG	4 cut(s)	31, 50, 63, 626
DpnI	GATC	8 cut(s)	165, 208, 359, 363, 386, 446, 458, 531
DpnII	GATC	8 cut(s)	163, 206, 357, 361, 384, 444, 456, 529
EaeI	YGGCCR	1 cut(s)	187
Ecl136II	GAGCTC	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	218
Eco24I	GRGCYC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	338
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	536
EcoICRI	GAGCTC	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	338
EcoT14I	CCWWGG	1 cut(s)	218
EcoT38I	GRGCYC	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	3 cut(s)	95, 177, 385
FaiI	YATR	6 cut(s)	93, 175, 186, 305, 383, 621
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	3 cut(s)	91, 173, 381
FbaI	TGATCA	1 cut(s)	384
Fnu4HI	GCNGC	1 cut(s)	155
FokI	GGATG	3 cut(s)	17, 55, 604
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	155
GluI	GCNGC	1 cut(s)	155
HaeIII	GGCC	3 cut(s)	55, 154, 189
HapII	CCGG	1 cut(s)	537
Hin1II	CATG	3 cut(s)	95, 177, 385
HinfI	GANTC	2 cut(s)	29, 517
HpaII	CCGG	1 cut(s)	537
HphI	GGTGA	1 cut(s)	301
Hpy188I	TCNGA	4 cut(s)	34, 163, 488, 529
Hpy188III	TCNNGA	4 cut(s)	20, 92, 344, 565
HpyAV	CCTTC	4 cut(s)	72, 143, 168, 241
HpyCH4III	ACNGT	3 cut(s)	103, 112, 233
HpyCH4V	TGCA	2 cut(s)	8, 237
HpyF3I	CTNAG	4 cut(s)	31, 50, 63, 626
Hsp92II	CATG	3 cut(s)	95, 177, 385
Ksp22I	TGATCA	1 cut(s)	384
Kzo9I	GATC	8 cut(s)	163, 206, 357, 361, 384, 444, 456, 529
LmnI	GCTCC	2 cut(s)	46, 122
LweI	GCATC	1 cut(s)	280
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	8 cut(s)	165, 208, 359, 363, 386, 446, 458, 531
MboI	GATC	8 cut(s)	163, 206, 357, 361, 384, 444, 456, 529
MboII	GAAGA	6 cut(s)	109, 127, 508, 524, 553, 556
MflI	RGATCY	2 cut(s)	206, 529
MhlI	GDGCHC	1 cut(s)	51
MlsI	TGGCCA	1 cut(s)	189
MluCI	AATT	1 cut(s)	490
MluNI	TGGCCA	1 cut(s)	189
MlyI	GAGTC	2 cut(s)	23, 526
MmeI	TCCRAC	1 cut(s)	569
MnlI	CCTC	3 cut(s)	23, 171, 351
Mox20I	TGGCCA	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	189
Msp20I	TGGCCA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	630
MspI	CCGG	1 cut(s)	537
MspR9I	CCNGG	2 cut(s)	537, 538
NciI	CCSGG	2 cut(s)	537, 538
NdeII	GATC	8 cut(s)	163, 206, 357, 361, 384, 444, 456, 529
NlaIII	CATG	3 cut(s)	95, 177, 385
NlaIV	GGNNCC	1 cut(s)	583
NmeAIII	GCCGAG	1 cut(s)	236
NmuCI	GTSAC	1 cut(s)	106
PagI	TCATGA	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	156
PleI	GAGTC	2 cut(s)	23, 525
PpsI	GAGTC	2 cut(s)	23, 525
PpuMI	RGGWCCY	1 cut(s)	338
Psp124BI	GAGCTC	1 cut(s)	51
Psp5II	RGGWCCY	1 cut(s)	338
PspN4I	GGNNCC	1 cut(s)	583
PspPI	GGNCC	2 cut(s)	152, 338
PspPPI	RGGWCCY	1 cut(s)	338
PsuI	RGATCY	2 cut(s)	206, 529
PvuII	CAGCTG	1 cut(s)	630
RsaI	GTAC	2 cut(s)	241, 300
RsaNI	GTAC	2 cut(s)	240, 299
SacI	GAGCTC	1 cut(s)	51
SatI	GCNGC	1 cut(s)	155
Sau3AI	GATC	8 cut(s)	163, 206, 357, 361, 384, 444, 456, 529
Sau96I	GGNCC	2 cut(s)	152, 338
ScaI	AGTACT	1 cut(s)	300
SchI	GAGTC	2 cut(s)	23, 526
ScrFI	CCNGG	2 cut(s)	537, 538
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	7 cut(s)	51, 127, 141, 273, 314, 340, 632
SfaNI	GCATC	1 cut(s)	280
SinI	GGWCC	1 cut(s)	338
SmaI	CCCGGG	1 cut(s)	538
Sse9I	AATT	1 cut(s)	490
SsiI	CCGC	1 cut(s)	155
SstI	GAGCTC	1 cut(s)	51
StyD4I	CCNGG	2 cut(s)	535, 536
StyI	CCWWGG	1 cut(s)	218
TaaI	ACNGT	3 cut(s)	103, 112, 233
TaqI	TCGA	3 cut(s)	245, 360, 515
TasI	AATT	1 cut(s)	490
TatI	WGTACW	2 cut(s)	239, 298
TauI	GCSGC	1 cut(s)	157
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	2 cut(s)	162, 608
TspMI	CCCGGG	1 cut(s)	536
TspRI	CASTG	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	338
XmaI	CCCGGG	1 cut(s)	536
ZrmI	AGTACT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.