Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008867

Physical Location & Seq

Genomic Coordinates Reverse (-)

29638074 .. 29639377

Gene Structure 1304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g27360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGATGAAACCCTTTCTCCAGAACCAGACTCAGATGTTTCAAAAAATCTCAGGCCAGAAAATCAGCCATCCAAAAGAAGGAAGGTGGCTCATGAGAAGACTGTTGTGACAGTGAAGATAGGAGCTAATGTCGGGAAGCTAAAGAACGAAGGGCCGCCTTCCGATCTTTGGTCATGGAGGAAGTATGGCCAAAAACCCATCAAAGGATCTCCTTATCCAAGGGGATACTACCGTTGCAGTACATCGAAAGGTTGCTCGGCGAAAAAACAAGTGGAAAGAAGCAAAACTGATGCTTCAGTTCTCATAATTACCTACACTTCCAGCCACAATCATCCAGGTCCTCCTGATGTGAATGTGATCTCCACCACCCAACAAGAACAAGAAGATGATCAGAAGCAAGAGCAAGAGCAAGAACAAGAAGATGATCAAGAACAAGAACAAGAACAAGATCAAAAGCAAGATCAGGATAAAAAACAAGATCAAGAACAAGAACATGGGAAATTGGAAGAACACTTCCACTACATCGAATCCCCAATCAGATCTTCCCAAGACGAACACATTTTTACGGCTCACGACACGAGTTTTGGGTTCTTGTTGGATGAAGAGCAAGAGCCACTGTCACTATCATATTCTCAGCTGATGAGCTTCTCAACACCCAAATTATCAGAAGAAAACAATGACTTTTTTGATGAGCTTGAAGAGCTGCCAACATTTTCATCCTTCCCAAGCTTCATGGGGAGGACTAACAATCTTTCCTTTGGAATTGAAAGGATTCCCTCTGTCCCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

264

Amino Acids

30.17

Weight (kDa)

4.83

Isoelectric Point (pI)

68.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	55 - 112	9.2e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g39060 FvH4_5g39060
malus_domestica	MD00G1140800.v1.1 MD03G1292900.v1.1
prunus_persica	Prupe.8G265900_v2.0.a1 Prupe.8G265900_v2.0.a1
pyrus_communis	pycom03g23220 pycom11g27360
rosa_chinensis	RchiOBHm_Chr7g0241021 RchiOBHm_Chr7g0241041
rosa_laevigata	RLG00000000603
rosa_multiflora	Rmu_sc0003187.1_g000008
rosa_roxburghii	Rroxscaffold_3G00219310
rosa_rugosa	Rorug07G0341300 Rorug07G0341400 Rorug07G0341500
rosa_samantha	Rh7AG496600 Rh7AG497100 Rh7BG467800 Rh7CG513800 Rh7DG481000
rosa_wichuraiana	Rw0G005810 Rw7G041940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	155
AclWI	GGATC	1 cut(s)	214
AcoI	YGGCCR	1 cut(s)	187
AcuI	CTGAAG	1 cut(s)	279
AfaI	GTAC	1 cut(s)	241
AfiI	CCNNNNNNNGG	3 cut(s)	78, 168, 203
AgsI	TTSAA	3 cut(s)	42, 698, 767
AjnI	CCWGG	1 cut(s)	334
AjuI	GAANNNNNNNTTGG	2 cut(s)	526, 558
AluBI	AGCT	7 cut(s)	125, 139, 637, 645, 694, 703, 729
AluI	AGCT	7 cut(s)	125, 139, 637, 645, 694, 703, 729
AlwI	GGATC	1 cut(s)	214
AoxI	GGCC	3 cut(s)	53, 152, 187
ApeKI	GCWGC	1 cut(s)	703
ArsI	GACNNNNNNTTYG	2 cut(s)	566, 598
Asp700I	GAANNNNTTC	1 cut(s)	771
AspS9I	GGNCC	2 cut(s)	152, 338
AvaII	GGWCC	1 cut(s)	338
BaeI	ACNNNNGTAYC	2 cut(s)	217, 250
BalI	TGGCCA	1 cut(s)	189
BauI	CACGAG	1 cut(s)	577
BbsI	GAAGAC	1 cut(s)	104
BbvI	GCAGC	1 cut(s)	690
BccI	CCATC	2 cut(s)	76, 206
BceAI	ACGGC	1 cut(s)	582
BciT130I	CCWGG	1 cut(s)	336
BciVI	GTATCC	1 cut(s)	218
BclI	TGATCA	2 cut(s)	388, 424
BfuI	GTATCC	1 cut(s)	218
BglII	AGATCT	1 cut(s)	539
BisI	GCNGC	2 cut(s)	155, 704
BlsI	GCNGC	2 cut(s)	156, 705
Bme1390I	CCNGG	1 cut(s)	336
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	152, 338
BmrFI	CCNGG	1 cut(s)	336
BmsI	GCATC	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	218
BsaXI	ACNNNNNCTCC	3 cut(s)	31, 114, 144
Bsc4I	CCNNNNNNNGG	3 cut(s)	78, 168, 203
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	218
BseGI	GGATG	5 cut(s)	10, 68, 331, 604, 716
BseLI	CCNNNNNNNGG	3 cut(s)	78, 168, 203
BseMII	CTCAG	3 cut(s)	45, 64, 647
BseXI	GCAGC	1 cut(s)	690
BshFI	GGCC	3 cut(s)	55, 154, 189
BslFI	GGGAC	1 cut(s)	767
BslI	CCNNNNNNNGG	3 cut(s)	78, 168, 203
BsmFI	GGGAC	1 cut(s)	767
BsnI	GGCC	3 cut(s)	55, 154, 189
Bsp143I	GATC	9 cut(s)	163, 206, 357, 388, 424, 448, 460, 478, 539
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	3 cut(s)	55, 154, 189
BspCNI	CTCAG	3 cut(s)	44, 63, 646
BspHI	TCATGA	1 cut(s)	91
BspPI	GGATC	1 cut(s)	214
BspQI	GCTCTTC	2 cut(s)	597, 693
BssECI	CCNNGG	1 cut(s)	218
BssMI	GATC	9 cut(s)	163, 206, 357, 388, 424, 448, 460, 478, 539
BssSI	CACGAG	1 cut(s)	577
BssT1I	CCWWGG	1 cut(s)	218
Bst2BI	CACGAG	1 cut(s)	577
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	4 cut(s)	103, 112, 233, 618
Bst6I	CTCTTC	2 cut(s)	597, 693
BstDEI	CTNAG	3 cut(s)	31, 50, 633
BstF5I	GGATG	5 cut(s)	10, 68, 331, 604, 716
BstKTI	GATC	9 cut(s)	166, 209, 360, 391, 427, 451, 463, 481, 542
BstMBI	GATC	9 cut(s)	163, 206, 357, 388, 424, 448, 460, 478, 539
BstMWI	GCNNNNNNNGC	1 cut(s)	700
BstNI	CCWGG	1 cut(s)	336
BstSCI	CCNGG	1 cut(s)	334
BstV1I	GCAGC	1 cut(s)	690
BstV2I	GAAGAC	1 cut(s)	104
BstX2I	RGATCY	2 cut(s)	206, 539
BstYI	RGATCY	2 cut(s)	206, 539
BsuI	GTATCC	1 cut(s)	218
BsuRI	GGCC	3 cut(s)	55, 154, 189
BtsCI	GGATG	5 cut(s)	10, 68, 331, 604, 716
BtsIMutI	CAGTG	2 cut(s)	117, 614
CciI	TCATGA	1 cut(s)	91
Cfr13I	GGNCC	2 cut(s)	152, 338
Csp6I	GTAC	1 cut(s)	240
CviAII	CATG	4 cut(s)	92, 174, 494, 733
CviQI	GTAC	1 cut(s)	240
DdeI	CTNAG	3 cut(s)	31, 50, 633
DpnI	GATC	9 cut(s)	165, 208, 359, 390, 426, 450, 462, 480, 541
DpnII	GATC	9 cut(s)	163, 206, 357, 388, 424, 448, 460, 478, 539
EaeI	YGGCCR	1 cut(s)	187
Eam1104I	CTCTTC	2 cut(s)	597, 693
EarI	CTCTTC	2 cut(s)	597, 693
Eco130I	CCWWGG	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	279
EcoO109I	RGGNCCY	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	4 cut(s)	95, 177, 497, 736
FaiI	YATR	7 cut(s)	93, 175, 186, 305, 495, 628, 734
FaqI	GGGAC	1 cut(s)	767
FatI	CATG	4 cut(s)	91, 173, 493, 732
FbaI	TGATCA	2 cut(s)	388, 424
Fnu4HI	GCNGC	2 cut(s)	155, 704
FokI	GGATG	5 cut(s)	17, 55, 318, 611, 703
Fsp4HI	GCNGC	2 cut(s)	155, 704
GluI	GCNGC	2 cut(s)	155, 704
HaeIII	GGCC	3 cut(s)	55, 154, 189
Hin1II	CATG	4 cut(s)	95, 177, 497, 736
HindIII	AAGCTT	1 cut(s)	727
HinfI	GANTC	3 cut(s)	29, 527, 772
Hpy188I	TCNGA	5 cut(s)	34, 163, 393, 539, 667
Hpy188III	TCNNGA	9 cut(s)	20, 92, 133, 344, 428, 464, 482, 572, 789
HpyAV	CCTTC	5 cut(s)	72, 76, 143, 168, 730
HpyCH4III	ACNGT	4 cut(s)	103, 112, 233, 618
HpyCH4V	TGCA	1 cut(s)	237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	700
HpyF3I	CTNAG	3 cut(s)	31, 50, 633
Hsp92II	CATG	4 cut(s)	95, 177, 497, 736
Ksp22I	TGATCA	2 cut(s)	388, 424
Kzo9I	GATC	9 cut(s)	163, 206, 357, 388, 424, 448, 460, 478, 539
LguI	GCTCTTC	2 cut(s)	597, 693
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	9 cut(s)	33, 37, 39, 69, 321, 334, 348, 357, 449
Lsp1109I	GCAGC	1 cut(s)	690
LweI	GCATC	1 cut(s)	280
MaeIII	GTNAC	2 cut(s)	106, 618
MalI	GATC	9 cut(s)	165, 208, 359, 390, 426, 450, 462, 480, 541
MboI	GATC	9 cut(s)	163, 206, 357, 388, 424, 448, 460, 478, 539
MboII	GAAGA	9 cut(s)	109, 127, 395, 431, 518, 534, 614, 680, 710
MflI	RGATCY	2 cut(s)	206, 539
MlsI	TGGCCA	1 cut(s)	189
MluCI	AATT	4 cut(s)	306, 500, 659, 762
MluNI	TGGCCA	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	576
MnlI	CCTC	4 cut(s)	171, 351, 732, 787
Mox20I	TGGCCA	1 cut(s)	189
MroXI	GAANNNNTTC	1 cut(s)	771
MscI	TGGCCA	1 cut(s)	189
Msp20I	TGGCCA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	637
MspR9I	CCNGG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	1 cut(s)	700
NdeII	GATC	9 cut(s)	163, 206, 357, 388, 424, 448, 460, 478, 539
NlaIII	CATG	4 cut(s)	95, 177, 497, 736
NmeAIII	GCCGAG	1 cut(s)	236
NmuCI	GTSAC	2 cut(s)	106, 618
PagI	TCATGA	1 cut(s)	91
PciSI	GCTCTTC	2 cut(s)	597, 693
PdmI	GAANNNNTTC	1 cut(s)	771
PfeI	GAWTC	2 cut(s)	527, 772
PkrI	GCNGC	2 cut(s)	156, 705
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PpuMI	RGGWCCY	1 cut(s)	338
Psp5II	RGGWCCY	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PspPI	GGNCC	2 cut(s)	152, 338
PspPPI	RGGWCCY	1 cut(s)	338
PsuI	RGATCY	2 cut(s)	206, 539
PvuII	CAGCTG	1 cut(s)	637
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
SapI	GCTCTTC	2 cut(s)	597, 693
SatI	GCNGC	2 cut(s)	155, 704
Sau3AI	GATC	9 cut(s)	163, 206, 357, 388, 424, 448, 460, 478, 539
Sau96I	GGNCC	2 cut(s)	152, 338
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	336
SfaNI	GCATC	1 cut(s)	280
SinI	GGWCC	1 cut(s)	338
Sse9I	AATT	4 cut(s)	306, 500, 659, 762
SsiI	CCGC	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	334
StyI	CCWWGG	1 cut(s)	218
TaaI	ACNGT	4 cut(s)	103, 112, 233, 618
TaqI	TCGA	2 cut(s)	245, 525
TasI	AATT	4 cut(s)	306, 500, 659, 762
TatI	WGTACW	1 cut(s)	239
TauI	GCSGC	1 cut(s)	157
TfiI	GAWTC	2 cut(s)	527, 772
TscAI	CASTG	2 cut(s)	117, 621
TseFI	GTSAC	2 cut(s)	106, 618
TseI	GCWGC	1 cut(s)	703
Tsp45I	GTSAC	2 cut(s)	106, 618
TspDTI	ATGAA	4 cut(s)	21, 615, 705, 721
TspRI	CASTG	2 cut(s)	117, 621
VpaK11BI	GGWCC	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.