Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008867

Physical Location & Seq

Genomic Coordinates Forward (+)

1450831 .. 1452438

Gene Structure 1608 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00219310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGATGAAACCCTCTCTTCACCAGAACAGGACTCAGAAGTCTCAAAGGAGCTCATGATTAGGCCAGAAACTCAGGCATCCAAAAGAAGGAAGGTGGCTCATCAGAAGACTGTGGTTACAGTGAAGATAGGACCAAATGTGGGGAAGCTAAAGAATGAAGGGCCTCCTTCTGATTTCTGGTCATGGAGGAAATATGGGCAAAAACCTATCAAAGGATCTCCTTATCCAAGGGGGTACTACAGGTGCAGTACATCAAAGGGTTGTTCTGCCAAGAAACAAGTGGAGAGAAGCAAAACTGATGCTTCTGTGCTCATAATCACCTACACTTCCAGCCATAACCATCCAGGTCCTGATGTGACCTCCACCACTAAAAACCAGAGCCCACCACCAAAAGAAGCCCAAATGCAACCCAATAGTGAAGATGATGATCATGATCATACAGCTGAAGTGCCCAAAGAGGATGAACCAGAGCCAGAGCCAGATCAAGATGAAGAACAAGAACAAGAAAGGAAAGTAGATGAACAGCAAGAACAAGATCATTTCCACTATATTCAGTCCCCAATTAGATCCTCCCAAGACATTGTGATTTACCAAGAAGAAGACCCTTTCAGCTCTGAGAACCACCTAGAGAAAACCCTATTGGATGAACACCCACATCCCCTCTGTTACTCGCAGCTCCTGAGCTTCTCATCAACACCCAAATCCGAAGAAGAAGAAGATTTCTACGACGAGCTTGAGGAATTGTTACCCACATCTTCATATTTCCCAAGCTTCATGAGAAGCAATCTTTCCCAGCTTGGAAGGATTCCTTTTGTCCCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

274

Amino Acids

31.4

Weight (kDa)

4.9

Isoelectric Point (pI)

66.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	58 - 115	1.4e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g39060 FvH4_5g39060
malus_domestica	MD00G1140800.v1.1 MD03G1292900.v1.1
prunus_persica	Prupe.8G265900_v2.0.a1 Prupe.8G265900_v2.0.a1
pyrus_communis	pycom03g23220 pycom11g27360
rosa_chinensis	RchiOBHm_Chr7g0241021 RchiOBHm_Chr7g0241041
rosa_laevigata	RLG00000000603
rosa_multiflora	Rmu_sc0003187.1_g000008
rosa_roxburghii	Rroxscaffold_3G00219310
rosa_rugosa	Rorug07G0341300 Rorug07G0341400 Rorug07G0341500
rosa_samantha	Rh7AG496600 Rh7AG497100 Rh7BG467800 Rh7CG513800 Rh7DG481000
rosa_wichuraiana	Rw0G005810 Rw7G041940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
AclWI	GGATC	2 cut(s)	223, 561
AcuI	CTGAAG	1 cut(s)	465
AfaI	GTAC	2 cut(s)	236, 250
AfiI	CCNNNNNNNGG	3 cut(s)	87, 140, 212
AjnI	CCWGG	1 cut(s)	343
AjuI	GAANNNNNNNTTGG	2 cut(s)	623, 655
AluBI	AGCT	9 cut(s)	52, 148, 443, 612, 676, 684, 733, 771, 796
AluI	AGCT	9 cut(s)	52, 148, 443, 612, 676, 684, 733, 771, 796
Alw21I	GWGCWC	2 cut(s)	54, 312
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	2 cut(s)	223, 561
AlwNI	CAGNNNCTG	2 cut(s)	350, 679
AoxI	GGCC	2 cut(s)	62, 161
ApeKI	GCWGC	1 cut(s)	673
AspS9I	GGNCC	3 cut(s)	131, 161, 347
AsuHPI	GGTGA	2 cut(s)	12, 310
AvaII	GGWCC	2 cut(s)	131, 347
BaeGI	GKGCMC	1 cut(s)	453
BanII	GRGCYC	2 cut(s)	54, 383
BbsI	GAAGAC	2 cut(s)	113, 606
Bbv12I	GWGCWC	2 cut(s)	54, 312
BbvI	GCAGC	1 cut(s)	685
BccI	CCATC	1 cut(s)	348
BciT130I	CCWGG	1 cut(s)	345
BclI	TGATCA	2 cut(s)	427, 433
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	626
BfmI	CTRYAG	1 cut(s)	238
BisI	GCNGC	1 cut(s)	674
BlsI	GCNGC	1 cut(s)	675
Bme1390I	CCNGG	1 cut(s)	345
Bme18I	GGWCC	2 cut(s)	131, 347
BmgT120I	GGNCC	3 cut(s)	131, 161, 347
BmrFI	CCNGG	1 cut(s)	345
BmsI	GCATC	2 cut(s)	86, 289
BpiI	GAAGAC	2 cut(s)	113, 606
Bpu10I	CCTNAGC	1 cut(s)	680
BpuEI	CTTGAG	1 cut(s)	755
BsaBI	GATNNNNATC	2 cut(s)	426, 432
BsaJI	CCNNGG	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 140, 212
Bse8I	GATNNNNATC	2 cut(s)	426, 432
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	227
BseGI	GGATG	6 cut(s)	10, 77, 340, 466, 649, 655
BseJI	GATNNNNATC	2 cut(s)	426, 432
BseLI	CCNNNNNNNGG	3 cut(s)	87, 140, 212
BseMII	CTCAG	4 cut(s)	48, 86, 606, 671
BseSI	GKGCMC	1 cut(s)	453
BseXI	GCAGC	1 cut(s)	685
BseYI	CCCAGC	1 cut(s)	792
BsgI	GTGCAG	1 cut(s)	265
BshFI	GGCC	2 cut(s)	64, 163
BsiHKAI	GWGCWC	2 cut(s)	54, 312
BslFI	GGGAC	2 cut(s)	541, 800
BslI	CCNNNNNNNGG	3 cut(s)	87, 140, 212
BsmAI	GTCTC	1 cut(s)	46
BsmFI	GGGAC	2 cut(s)	541, 800
BsnI	GGCC	2 cut(s)	64, 163
Bsp1286I	GDGCHC	4 cut(s)	54, 312, 383, 453
Bsp143I	GATC	6 cut(s)	215, 427, 433, 481, 535, 566
BspANI	GGCC	2 cut(s)	64, 163
BspCNI	CTCAG	4 cut(s)	47, 85, 607, 672
BspHI	TCATGA	3 cut(s)	54, 430, 774
BspPI	GGATC	2 cut(s)	223, 561
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	6 cut(s)	215, 427, 433, 481, 535, 566
BssT1I	CCWWGG	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	2 cut(s)	112, 121
Bst6I	CTCTTC	1 cut(s)	22
BstDEI	CTNAG	4 cut(s)	34, 72, 615, 680
BstENI	CCTNNNNNAGG	1 cut(s)	210
BstF5I	GGATG	6 cut(s)	10, 77, 340, 466, 649, 655
BstKTI	GATC	6 cut(s)	218, 430, 436, 484, 538, 569
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	6 cut(s)	215, 427, 433, 481, 535, 566
BstNI	CCWGG	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	343
BstSFI	CTRYAG	1 cut(s)	238
BstSLI	GKGCMC	1 cut(s)	453
BstV1I	GCAGC	1 cut(s)	685
BstV2I	GAAGAC	2 cut(s)	113, 606
BstX2I	RGATCY	2 cut(s)	215, 566
BstYI	RGATCY	2 cut(s)	215, 566
BsuRI	GGCC	2 cut(s)	64, 163
BtsCI	GGATG	6 cut(s)	10, 77, 340, 466, 649, 655
BtsIMutI	CAGTG	1 cut(s)	126
CaiI	CAGNNNCTG	2 cut(s)	350, 679
CciI	TCATGA	3 cut(s)	54, 430, 774
Cfr13I	GGNCC	3 cut(s)	131, 161, 347
Csp6I	GTAC	2 cut(s)	235, 249
CviAII	CATG	4 cut(s)	55, 183, 431, 775
CviQI	GTAC	2 cut(s)	235, 249
DdeI	CTNAG	4 cut(s)	34, 72, 615, 680
DpnI	GATC	6 cut(s)	217, 429, 435, 483, 537, 568
DpnII	GATC	6 cut(s)	215, 427, 433, 481, 535, 566
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Ecl136II	GAGCTC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	227
Eco24I	GRGCYC	2 cut(s)	54, 383
Eco47I	GGWCC	2 cut(s)	131, 347
Eco53kI	GAGCTC	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	465
EcoICRI	GAGCTC	1 cut(s)	52
EcoNI	CCTNNNNNAGG	1 cut(s)	210
EcoO109I	RGGNCCY	2 cut(s)	161, 347
EcoRII	CCWGG	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	227
EcoT38I	GRGCYC	2 cut(s)	54, 383
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	4 cut(s)	58, 186, 434, 778
FalI	AAGNNNNNCTT	2 cut(s)	793, 825
FaqI	GGGAC	2 cut(s)	541, 800
FatI	CATG	4 cut(s)	54, 182, 430, 774
FbaI	TGATCA	2 cut(s)	427, 433
Fnu4HI	GCNGC	1 cut(s)	674
FokI	GGATG	6 cut(s)	17, 64, 327, 473, 642, 656
FriOI	GRGCYC	2 cut(s)	54, 383
Fsp4HI	GCNGC	1 cut(s)	674
FspBI	CTAG	1 cut(s)	626
GluI	GCNGC	1 cut(s)	674
GsaI	CCCAGC	1 cut(s)	796
HaeIII	GGCC	2 cut(s)	64, 163
Hin1II	CATG	4 cut(s)	58, 186, 434, 778
HindIII	AAGCTT	1 cut(s)	769
HinfI	GANTC	2 cut(s)	32, 805
HphI	GGTGA	2 cut(s)	12, 310
Hpy188I	TCNGA	5 cut(s)	37, 105, 172, 616, 706
Hpy188III	TCNNGA	7 cut(s)	55, 350, 431, 485, 679, 775, 822
Hpy99I	CGWCG	1 cut(s)	731
HpyAV	CCTTC	5 cut(s)	81, 85, 152, 177, 795
HpyCH4III	ACNGT	2 cut(s)	112, 121
HpyCH4V	TGCA	2 cut(s)	246, 406
HpyF3I	CTNAG	4 cut(s)	34, 72, 615, 680
Hsp92II	CATG	4 cut(s)	58, 186, 434, 778
Ksp22I	TGATCA	2 cut(s)	427, 433
Kzo9I	GATC	6 cut(s)	215, 427, 433, 481, 535, 566
LmnI	GCTCC	2 cut(s)	49, 681
Lsp1109I	GCAGC	1 cut(s)	685
LweI	GCATC	2 cut(s)	86, 289
MaeI	CTAG	1 cut(s)	626
MaeIII	GTNAC	4 cut(s)	115, 355, 665, 744
MalI	GATC	6 cut(s)	217, 429, 435, 483, 537, 568
MboI	GATC	6 cut(s)	215, 427, 433, 481, 535, 566
MflI	RGATCY	2 cut(s)	215, 566
MhlI	GDGCHC	4 cut(s)	54, 312, 383, 453
MluCI	AATT	2 cut(s)	561, 740
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	8 cut(s)	23, 174, 180, 370, 451, 580, 671, 730
MspA1I	CMGCKG	1 cut(s)	443
MspR9I	CCNGG	1 cut(s)	345
MvaI	CCWGG	1 cut(s)	345
NdeII	GATC	6 cut(s)	215, 427, 433, 481, 535, 566
NlaIII	CATG	4 cut(s)	58, 186, 434, 778
NmuCI	GTSAC	1 cut(s)	355
PagI	TCATGA	3 cut(s)	54, 430, 774
PfeI	GAWTC	1 cut(s)	805
PkrI	GCNGC	1 cut(s)	675
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PpuMI	RGGWCCY	1 cut(s)	347
Psp124BI	GAGCTC	1 cut(s)	54
Psp5II	RGGWCCY	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	343
PspFI	CCCAGC	1 cut(s)	792
PspGI	CCWGG	1 cut(s)	343
PspPI	GGNCC	3 cut(s)	131, 161, 347
PspPPI	RGGWCCY	1 cut(s)	347
PstNI	CAGNNNCTG	2 cut(s)	350, 679
PsuI	RGATCY	2 cut(s)	215, 566
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	2 cut(s)	236, 250
RsaNI	GTAC	2 cut(s)	235, 249
SacI	GAGCTC	1 cut(s)	54
SatI	GCNGC	1 cut(s)	674
Sau3AI	GATC	6 cut(s)	215, 427, 433, 481, 535, 566
Sau96I	GGNCC	3 cut(s)	131, 161, 347
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	345
SduI	GDGCHC	4 cut(s)	54, 312, 383, 453
SfaNI	GCATC	2 cut(s)	86, 289
SfcI	CTRYAG	1 cut(s)	238
SinI	GGWCC	2 cut(s)	131, 347
SmlI	CTYRAG	1 cut(s)	734
SmoI	CTYRAG	1 cut(s)	734
Sse9I	AATT	2 cut(s)	561, 740
SspMI	CTAG	1 cut(s)	626
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	343
StyI	CCWWGG	1 cut(s)	227
TaaI	ACNGT	2 cut(s)	112, 121
TasI	AATT	2 cut(s)	561, 740
TatI	WGTACW	1 cut(s)	248
TfiI	GAWTC	1 cut(s)	805
TscAI	CASTG	1 cut(s)	126
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	1 cut(s)	673
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	8 cut(s)	21, 171, 477, 504, 534, 660, 747, 763
TspRI	CASTG	1 cut(s)	126
VpaK11BI	GGWCC	2 cut(s)	131, 347
XagI	CCTNNNNNAGG	1 cut(s)	210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277
XspI	CTAG	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.