Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008867

Physical Location & Seq

Genomic Coordinates Forward (+)

37623821 .. 37628996

Gene Structure 5176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0341400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGGGGAAAGGTGAGAAAAGCCTGCACCAGCAGCAGCAGCACAGCCACCAGAGTCATCAACCCCACGATTCTTCTTCTTCTTCTTCTGGGTTCGTCTGTCCTCAATGTTCCAGATTCTTCAACGGAATCGCCCACCAGTTCAGCTTTCGATGCGTCTTCGTTTTGATTCTCGGATTATCGGTTTTTCTCTCCGGGATCTTCTGGATCCTTCCTCGACATTCCGTCAATAATGGGTTCGATGCCAAAGAGGCCATTAAGCTCAGTGCCACAGTTCAGGCATACTTCAGACTGGAAAAGCCAGTTCGAGAGCTTGTTCCACACATCGGTCAATTAGAATATGATATCTATGGGGAAATAGGTGTCCCAGGTACAAAGGTGGCTATTTTGTCCATGCACCAATACGGTGCATCTAACTGGACTGATGTGGTGTTCGGTGTTCTTTCCGATCCCGTGAATGTTCCGATACTTCCAGTGTCCTTAAGTGTGCTGAGATCATCTTTGGTTGAGCTGTTCCTTGAGCAATCTAATCTTACATTGACGGCATCAACGTTCGGGCAACCATATATGTTTGAGATTCTAGAGTATCCTGGGGGAATCACTGTGATTCCTGGGAAAGCTGCTTCAATCTGGCAGATACCGCAGATTCTGTTTAACTTTACTCTCAATAATTCAATAACTGAAATAGTGGAAAATTTTGGTGAGCTAAAGGAGCAGCTGAGGTTTGGGTTGCATTTAAGGCCTTACGAGGATGTCTTTCTGCAAGTAACAAACACATTGGGTTCAACTACAGATTCCCCAGTTGAAGTTCAAGCTTCGCTTATGTCTGCTTTTGGGGGACTTCTGCCACAGAGGTTGAAACAGTTAGCTCAGACAATTACAGGCTCTCCGGCAAGAAATCTCGGCCTTGATAACTCCGTCTTTGGTAAGGTCAAAAGTATCAGATTATCCTCCTATTTGAAGGGTACACTTTTTGCCACCCCTCCAACTCCTTCTCCAGCTCCATCACCAGAACTAAGTGATACTGCAGGACCATCAATCTCTCCAAATCCTGCTCCAACAGTTTACTCTTCAGCACCTTCACCCTCCAAGACTACACATCCTCCTCGTCCATGTTTATACCATGGTTCTACTCATCCAAGCTCCTCGCCAACTCCTCATTTTAACCCTAGTATCCCCCCTACTTATGCACCTAGAACTTCGCCTTACTCACCTTCTATGAGTCCCTCATCTCAAGTGGCCCCACATGCATCACCCGCGCCCGGAGTGTCATATGCTTCTAGTCCAGGCTACAAGAAAAGTGCAAAAGGCTTGAGGTCTCCATCACCCGCCCCAACCCCATCATCTTTAGCGGTAGGGCCTTTCTACAAAGAGATACGATTATTGGGATTTTGTGGACTCTTCATCTTTCATCTCCTTTGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

474

Amino Acids

51.3

Weight (kDa)

8.77

Isoelectric Point (pI)

61.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7036	PF23041	94 - 185	9.3e-30	Domain of unknown function (DUF7036)
DUF7036	PF23041	218 - 308	2.2e-21	Domain of unknown function (DUF7036)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g39060 FvH4_5g39060
malus_domestica	MD00G1140800.v1.1 MD03G1292900.v1.1
prunus_persica	Prupe.8G265900_v2.0.a1 Prupe.8G265900_v2.0.a1
pyrus_communis	pycom03g23220 pycom11g27360
rosa_chinensis	RchiOBHm_Chr7g0241021 RchiOBHm_Chr7g0241041
rosa_laevigata	RLG00000000603
rosa_multiflora	Rmu_sc0003187.1_g000008
rosa_roxburghii	Rroxscaffold_3G00219310
rosa_rugosa	Rorug07G0341300 Rorug07G0341400 Rorug07G0341500
rosa_samantha	Rh7AG496600 Rh7AG497100 Rh7BG467800 Rh7CG513800 Rh7DG481000
rosa_wichuraiana	Rw0G005810 Rw7G041940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1256
AciI	CCGC	4 cut(s)	638, 1254, 1326, 1349
AclI	AACGTT	1 cut(s)	548
AclWI	GGATC	4 cut(s)	199, 203, 212, 440
AcsI	RAATTY	1 cut(s)	691
AcuI	CTGAAG	2 cut(s)	268, 1053
AfaI	GTAC	2 cut(s)	370, 964
AfiI	CCNNNNNNNGG	2 cut(s)	323, 1259
AflII	CTTAAG	1 cut(s)	478
AgsI	TTSAA	8 cut(s)	121, 624, 672, 783, 803, 809, 856, 958
AhdI	GACNNNNNGTC	1 cut(s)	221
AjnI	CCWGG	4 cut(s)	364, 586, 607, 1282
Alw26I	GTCTC	1 cut(s)	1320
AlwI	GGATC	4 cut(s)	199, 203, 212, 440
AlwNI	CAGNNNCTG	1 cut(s)	646
AoxI	GGCC	5 cut(s)	249, 737, 901, 1236, 1355
ApeKI	GCWGC	5 cut(s)	31, 34, 37, 617, 712
ApoI	RAATTY	1 cut(s)	691
AspLEI	GCGC	1 cut(s)	1258
AspS9I	GGNCC	3 cut(s)	1028, 1237, 1355
AsuC2I	CCSGG	2 cut(s)	193, 1260
AsuHPI	GGTGA	7 cut(s)	23, 710, 996, 1071, 1200, 1242, 1314
AvaII	GGWCC	1 cut(s)	1028
BaeI	ACNNNNGTAYC	4 cut(s)	360, 393, 1153, 1186
BamHI	GGATCC	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	148
BbvCI	CCTCAGC	1 cut(s)	716
BbvI	GCAGC	5 cut(s)	43, 46, 49, 604, 724
BccI	CCATC	4 cut(s)	1009, 1039, 1327, 1345
BceAI	ACGGC	1 cut(s)	555
BciT130I	CCWGG	4 cut(s)	366, 588, 609, 1284
BciVI	GTATCC	2 cut(s)	594, 1181
BcnI	CCSGG	2 cut(s)	193, 1260
BcoDI	GTCTC	1 cut(s)	1320
BfaI	CTAG	4 cut(s)	578, 1167, 1191, 1278
BfmI	CTRYAG	2 cut(s)	786, 1023
BfrI	CTTAAG	1 cut(s)	478
BfuI	GTATCC	2 cut(s)	594, 1181
BglI	GCCNNNNNGGC	1 cut(s)	248
BisI	GCNGC	5 cut(s)	32, 35, 38, 618, 713
BlsI	GCNGC	5 cut(s)	33, 36, 39, 619, 714
Bme1390I	CCNGG	6 cut(s)	193, 366, 588, 609, 1260, 1284
Bme18I	GGWCC	1 cut(s)	1028
BmeRI	GACNNNNNGTC	1 cut(s)	221
BmgT120I	GGNCC	3 cut(s)	1028, 1237, 1355
BmiI	GGNNCC	2 cut(s)	206, 1239
BmrFI	CCNGG	6 cut(s)	193, 366, 588, 609, 1260, 1284
BmrI	ACTGGG	1 cut(s)	791
BmsI	GCATC	5 cut(s)	140, 229, 416, 551, 1256
BmuI	ACTGGG	1 cut(s)	791
BpiI	GAAGAC	1 cut(s)	148
BpmI	CTGGAG	1 cut(s)	978
Bpu10I	CCTNAGC	1 cut(s)	716
BpuEI	CTTGAG	3 cut(s)	536, 1215, 1330
BpuMI	CCSGG	2 cut(s)	193, 1260
BsaI	GGTCTC	1 cut(s)	1320
BsaJI	CCNNGG	4 cut(s)	364, 587, 608, 1120
BsaXI	ACNNNNNCTCC	6 cut(s)	868, 898, 976, 1006, 1084, 1114
Bsc4I	CCNNNNNNNGG	2 cut(s)	323, 1259
Bse1I	ACTGG	6 cut(s)	136, 294, 299, 419, 470, 797
BseBI	CCWGG	4 cut(s)	366, 588, 609, 1284
BseDI	CCNNGG	4 cut(s)	364, 587, 608, 1120
BseGI	GGATG	3 cut(s)	754, 1096, 1132
BseLI	CCNNNNNNNGG	2 cut(s)	323, 1259
BseMII	CTCAG	4 cut(s)	274, 479, 707, 881
BseNI	ACTGG	6 cut(s)	136, 294, 299, 419, 470, 797
BseRI	GAGGAG	3 cut(s)	1092, 1132, 1143
BseXI	GCAGC	5 cut(s)	43, 46, 49, 604, 724
BsgI	GTGCAG	1 cut(s)	8
Bsh1236I	CGCG	1 cut(s)	1256
BshFI	GGCC	5 cut(s)	251, 739, 903, 1238, 1357
BsiSI	CCGG	3 cut(s)	192, 887, 1260
BslFI	GGGAC	3 cut(s)	347, 849, 1206
BslI	CCNNNNNNNGG	2 cut(s)	323, 1259
BsmAI	GTCTC	1 cut(s)	1320
BsmFI	GGGAC	3 cut(s)	347, 849, 1206
BsnI	GGCC	5 cut(s)	251, 739, 903, 1238, 1357
Bso31I	GGTCTC	1 cut(s)	1320
Bsp143I	GATC	4 cut(s)	195, 204, 445, 491
Bsp19I	CCATGG	1 cut(s)	1120
BspACI	CCGC	4 cut(s)	638, 1254, 1326, 1349
BspANI	GGCC	5 cut(s)	251, 739, 903, 1238, 1357
BspCNI	CTCAG	4 cut(s)	273, 480, 708, 880
BspFNI	CGCG	1 cut(s)	1256
BspLI	GGNNCC	2 cut(s)	206, 1239
BspMAI	CTGCAG	1 cut(s)	1027
BspPI	GGATC	4 cut(s)	199, 203, 212, 440
BspTI	CTTAAG	1 cut(s)	478
BspTNI	GGTCTC	1 cut(s)	1320
BsrI	ACTGG	6 cut(s)	136, 294, 299, 419, 470, 797
BssECI	CCNNGG	4 cut(s)	364, 587, 608, 1120
BssMI	GATC	4 cut(s)	195, 204, 445, 491
BssT1I	CCWWGG	1 cut(s)	1120
Bst2UI	CCWGG	4 cut(s)	366, 588, 609, 1284
Bst4CI	ACNGT	5 cut(s)	271, 404, 601, 861, 1060
Bst6I	CTCTTC	2 cut(s)	1072, 1403
BstAFI	CTTAAG	1 cut(s)	478
BstC8I	GCNNGC	1 cut(s)	23
BstDEI	CTNAG	5 cut(s)	260, 488, 716, 867, 1013
BstDSI	CCRYGG	1 cut(s)	1120
BstF5I	GGATG	3 cut(s)	754, 1096, 1132
BstFNI	CGCG	1 cut(s)	1256
BstHHI	GCGC	1 cut(s)	1258
BstKTI	GATC	4 cut(s)	198, 207, 448, 494
BstMAI	GTCTC	1 cut(s)	1320
BstMBI	GATC	4 cut(s)	195, 204, 445, 491
BstMWI	GCNNNNNNNGC	9 cut(s)	31, 37, 150, 248, 637, 709, 736, 1244, 1253
BstNI	CCWGG	4 cut(s)	366, 588, 609, 1284
BstNSI	RCATGY	1 cut(s)	1247
BstSCI	CCNGG	6 cut(s)	191, 364, 586, 607, 1258, 1282
BstSFI	CTRYAG	2 cut(s)	786, 1023
BstUI	CGCG	1 cut(s)	1256
BstV1I	GCAGC	5 cut(s)	43, 46, 49, 604, 724
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	2 cut(s)	195, 204
BstYI	RGATCY	2 cut(s)	195, 204
BsuI	GTATCC	2 cut(s)	594, 1181
BsuRI	GGCC	5 cut(s)	251, 739, 903, 1238, 1357
BtgI	CCRYGG	1 cut(s)	1120
BtsCI	GGATG	3 cut(s)	754, 1096, 1132
BtsIMutI	CAGTG	3 cut(s)	268, 477, 597
Cac8I	GCNNGC	1 cut(s)	23
CaiI	CAGNNNCTG	1 cut(s)	646
CfoI	GCGC	1 cut(s)	1258
Cfr13I	GGNCC	3 cut(s)	1028, 1237, 1355
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	2 cut(s)	369, 963
CspCI	CAANNNNNGTGG	2 cut(s)	834, 869
CviAII	CATG	4 cut(s)	391, 1110, 1121, 1244
CviQI	GTAC	2 cut(s)	369, 963
DdeI	CTNAG	5 cut(s)	260, 488, 716, 867, 1013
DpnI	GATC	4 cut(s)	197, 206, 447, 493
DpnII	GATC	4 cut(s)	195, 204, 445, 491
DriI	GACNNNNNGTC	1 cut(s)	221
Eam1104I	CTCTTC	2 cut(s)	1072, 1403
Eam1105I	GACNNNNNGTC	1 cut(s)	221
EarI	CTCTTC	2 cut(s)	1072, 1403
Eco130I	CCWWGG	1 cut(s)	1120
Eco147I	AGGCCT	1 cut(s)	739
Eco31I	GGTCTC	1 cut(s)	1320
Eco32I	GATATC	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	1028
Eco57I	CTGAAG	2 cut(s)	268, 1053
EcoO109I	RGGNCCY	1 cut(s)	1355
EcoRII	CCWGG	4 cut(s)	364, 586, 607, 1282
EcoRV	GATATC	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	1120
EcoT22I	ATGCAT	1 cut(s)	1249
ErhI	CCWWGG	1 cut(s)	1120
FaeI	CATG	4 cut(s)	394, 1113, 1124, 1247
FalI	AAGNNNNNCTT	2 cut(s)	801, 833
FaqI	GGGAC	3 cut(s)	347, 849, 1206
FatI	CATG	4 cut(s)	390, 1109, 1120, 1243
FauI	CCCGC	2 cut(s)	1261, 1333
FauNDI	CATATG	1 cut(s)	1270
Fnu4HI	GCNGC	5 cut(s)	32, 35, 38, 618, 713
FokI	GGATG	3 cut(s)	761, 1083, 1119
Fsp4HI	GCNGC	5 cut(s)	32, 35, 38, 618, 713
FspBI	CTAG	4 cut(s)	578, 1167, 1191, 1278
GlaI	GCGC	1 cut(s)	1257
GluI	GCNGC	5 cut(s)	32, 35, 38, 618, 713
GsuI	CTGGAG	1 cut(s)	978
HaeIII	GGCC	5 cut(s)	251, 739, 903, 1238, 1357
HapII	CCGG	3 cut(s)	192, 887, 1260
HgaI	GACGC	1 cut(s)	142
HhaI	GCGC	1 cut(s)	1258
Hin1II	CATG	4 cut(s)	394, 1113, 1124, 1247
Hin6I	GCGC	1 cut(s)	1256
HinP1I	GCGC	1 cut(s)	1256
HindIII	AAGCTT	1 cut(s)	810
HpaII	CCGG	3 cut(s)	192, 887, 1260
HphI	GGTGA	7 cut(s)	23, 710, 996, 1071, 1200, 1242, 1314
Hpy166II	GTNNAC	3 cut(s)	965, 1063, 1394
Hpy188I	TCNGA	6 cut(s)	173, 287, 445, 462, 870, 941
Hpy188III	TCNNGA	4 cut(s)	111, 202, 305, 578
Hpy8I	GTNNAC	3 cut(s)	965, 1063, 1394
HpyAV	CCTTC	5 cut(s)	218, 952, 999, 1086, 1221
HpyCH4III	ACNGT	5 cut(s)	271, 404, 601, 861, 1060
HpyCH4IV	ACGT	1 cut(s)	548
HpyCH4V	TGCA	9 cut(s)	25, 394, 407, 730, 760, 1025, 1187, 1247, 1301
HpyF10VI	GCNNNNNNNGC	9 cut(s)	31, 37, 150, 248, 637, 709, 736, 1244, 1253
HpyF3I	CTNAG	5 cut(s)	260, 488, 716, 867, 1013
HpySE526I	ACGT	1 cut(s)	548
Hsp92II	CATG	4 cut(s)	394, 1113, 1124, 1247
HspAI	GCGC	1 cut(s)	1256
Kzo9I	GATC	4 cut(s)	195, 204, 445, 491
LmnI	GCTCC	4 cut(s)	709, 1003, 1057, 1145
Lsp1109I	GCAGC	5 cut(s)	43, 46, 49, 604, 724
LweI	GCATC	5 cut(s)	140, 229, 416, 551, 1256
MaeI	CTAG	4 cut(s)	578, 1167, 1191, 1278
MaeII	ACGT	1 cut(s)	548
MaeIII	GTNAC	1 cut(s)	763
MalI	GATC	4 cut(s)	197, 206, 447, 493
MboI	GATC	4 cut(s)	195, 204, 445, 491
MflI	RGATCY	2 cut(s)	195, 204
MluCI	AATT	4 cut(s)	329, 667, 691, 873
MlyI	GAGTC	3 cut(s)	61, 1228, 1389
MmeI	TCCRAC	2 cut(s)	1007, 1079
Mph1103I	ATGCAT	1 cut(s)	1249
MseI	TTAA	5 cut(s)	255, 479, 651, 734, 1161
MspA1I	CMGCKG	1 cut(s)	715
MspCI	CTTAAG	1 cut(s)	478
MspI	CCGG	3 cut(s)	192, 887, 1260
MspR9I	CCNGG	6 cut(s)	193, 366, 588, 609, 1260, 1284
MvaI	CCWGG	4 cut(s)	366, 588, 609, 1284
MvnI	CGCG	1 cut(s)	1256
MwoI	GCNNNNNNNGC	9 cut(s)	31, 37, 150, 248, 637, 709, 736, 1244, 1253
NciI	CCSGG	2 cut(s)	193, 1260
NcoI	CCATGG	1 cut(s)	1120
NdeI	CATATG	1 cut(s)	1270
NdeII	GATC	4 cut(s)	195, 204, 445, 491
NlaIII	CATG	4 cut(s)	394, 1113, 1124, 1247
NlaIV	GGNNCC	2 cut(s)	206, 1239
NmeAIII	GCCGAG	1 cut(s)	879
NsiI	ATGCAT	1 cut(s)	1249
NspI	RCATGY	1 cut(s)	1247
PceI	AGGCCT	1 cut(s)	739
PcsI	WCGNNNNNNNCGW	1 cut(s)	545
PfeI	GAWTC	9 cut(s)	68, 114, 126, 166, 574, 594, 604, 643, 791
PfoI	TCCNGGA	1 cut(s)	191
PkrI	GCNGC	5 cut(s)	33, 36, 39, 619, 714
PleI	GAGTC	3 cut(s)	60, 1227, 1389
PpsI	GAGTC	3 cut(s)	60, 1227, 1389
Psp1406I	AACGTT	1 cut(s)	548
Psp6I	CCWGG	4 cut(s)	364, 586, 607, 1282
PspGI	CCWGG	4 cut(s)	364, 586, 607, 1282
PspN4I	GGNNCC	2 cut(s)	206, 1239
PspPI	GGNCC	3 cut(s)	1028, 1237, 1355
PstI	CTGCAG	1 cut(s)	1027
PstNI	CAGNNNCTG	1 cut(s)	646
PsuI	RGATCY	2 cut(s)	195, 204
PvuII	CAGCTG	1 cut(s)	715
RsaI	GTAC	2 cut(s)	370, 964
RsaNI	GTAC	2 cut(s)	369, 963
SaqAI	TTAA	5 cut(s)	255, 479, 651, 734, 1161
SatI	GCNGC	5 cut(s)	32, 35, 38, 618, 713
Sau3AI	GATC	4 cut(s)	195, 204, 445, 491
Sau96I	GGNCC	3 cut(s)	1028, 1237, 1355
SchI	GAGTC	3 cut(s)	61, 1228, 1389
ScrFI	CCNGG	6 cut(s)	193, 366, 588, 609, 1260, 1284
SfaNI	GCATC	5 cut(s)	140, 229, 416, 551, 1256
SfcI	CTRYAG	2 cut(s)	786, 1023
SinI	GGWCC	1 cut(s)	1028
SmlI	CTYRAG	4 cut(s)	478, 515, 1230, 1309
SmoI	CTYRAG	4 cut(s)	478, 515, 1230, 1309
Sse9I	AATT	4 cut(s)	329, 667, 691, 873
SseBI	AGGCCT	1 cut(s)	739
SsiI	CCGC	4 cut(s)	638, 1254, 1326, 1349
SspMI	CTAG	4 cut(s)	578, 1167, 1191, 1278
StuI	AGGCCT	1 cut(s)	739
StyD4I	CCNGG	6 cut(s)	191, 364, 586, 607, 1258, 1282
StyI	CCWWGG	1 cut(s)	1120
TaaI	ACNGT	5 cut(s)	271, 404, 601, 861, 1060
TaiI	ACGT	1 cut(s)	551
TaqI	TCGA	4 cut(s)	148, 214, 237, 304
TaqII	GACCGA	1 cut(s)	314
TasI	AATT	4 cut(s)	329, 667, 691, 873
TfiI	GAWTC	9 cut(s)	68, 114, 126, 166, 574, 594, 604, 643, 791
Tru1I	TTAA	5 cut(s)	255, 479, 651, 734, 1161
Tru9I	TTAA	5 cut(s)	255, 479, 651, 734, 1161
TscAI	CASTG	3 cut(s)	268, 477, 604
TseI	GCWGC	5 cut(s)	31, 34, 37, 617, 712
TspDTI	ATGAA	2 cut(s)	1390, 1397
TspGWI	ACGGA	3 cut(s)	138, 211, 904
TspRI	CASTG	3 cut(s)	268, 477, 604
Vha464I	CTTAAG	1 cut(s)	478
VpaK11BI	GGWCC	1 cut(s)	1028
XapI	RAATTY	1 cut(s)	691
XbaI	TCTAGA	1 cut(s)	577
XceI	RCATGY	1 cut(s)	1247
XspI	CTAG	4 cut(s)	578, 1167, 1191, 1278
Zsp2I	ATGCAT	1 cut(s)	1249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.