FvH4_6g00590

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012632
Physical Location & Seq
Reverse (-)
343662 .. 351439
7778 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00590.t1

Sequence Viewer

Length: 1176 bp
ATGAAGTCACCTTTTAATCATATATCTCTGGGTGCAGGGCCAGGAAATGGGAGATCATACTTCATTAGGTTTCTCCCTTCAGCTTCTTTGATATTCTTAGCTCTTCTGCTGGGTAGCGCATTCATATTATCAGAATTCAATGAGAAATCATCATTTGGGAGAGTCAGAAATAGTTTGCGTAGTTCCAAATTAAAATGCAAGAATCATAGAAGGCCATATGGAAGTGAAACATTGCCTAGAGGTATCGTCGCCAAGACTTCTAATCTGGAAATGCGGCCATTATGGACATCGCCTAACAAGCCGCCTTCAAGGTTACACCAGAAAAGTGCAAATTCCTCGGTCAGCTTGTTAGCAATGGCTGTTGGGATAAAGCAGATGGATCTAGTCGGTAAAATGGTCAAAAAGTTTCTGTCTAGTGGTTTTGTTGTGATGCTTTTCCATTATGATGGTAACCTTGATGAGTGGAAGCAATTTCAATGGAATGATCTTGTTATTCATGTTTCGGCAGTCGATCAAACAAAATGGTGGTTCGCAAAGCGTTTCTTGCATCCTGATATAGTTGCTGAATATAGTTACATTTTTCTATGGGATGAGGATCTTGGAGTTGACAATTTTAATCCTCAACGGTATGTATCCATTATTCGAAAGGAAGGGCTACATATATCACAACCGGCACTTGATTTTTCCAAGTCAGAGGTGCATCATCAAATTACTGCACGCGTGAAAGGATCAATAGTTCACAGAAGGACTTACAAGCCTAATGCCAATGGGACTGGTTGCGATGAACATAGTACAGCTCCTCCTTGTACTGGGTGGATAGAAGTGATGGCTCCAGTTTTCTCTCAAGCTGCCTGGCGTTGCGTATGGTATATGATCCAGAATAATTTGATCCATGCTTGGGGACTAGATATGCAGCTTGGCTATTGTGCACAGGGTGATCGAACGAAGAATATTGGTGTCGTAGATGCGGAGTACCTAATCCATTATGGCCGCCCTACTTTGGGAGGTCCAAACGATAATGAGAAATCACCTCAAGCTAGTGCAAAGGACCACAGAGTTGATGTGAGGAGGGAATCCTACAACGAAATGAAGATGTTCAGACGAAAATGGGAAACAGCTGCTAAGAATGATGATTGTTGGATTGATCCATACCCTGTTAATAGTAGCCGGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

392

Amino Acids

44.63

Weight (kDa)

9.46

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 71 - 375 5.4e-141 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 47
AccII CGCG 1 cut(s) 720
AciI CCGC 4 cut(s) 274, 302, 968, 991
AclWI GGATC 6 cut(s) 387, 603, 736, 868, 883, 1139
AcoI YGGCCR 2 cut(s) 275, 988
AcsI RAATTY 2 cut(s) 134, 331
AcuI CTGAAG 1 cut(s) 63
AdeI CACNNNGTG 1 cut(s) 935
AfaI GTAC 3 cut(s) 793, 808, 974
AfiI CCNNNNNNNGG 5 cut(s) 47, 809, 898, 1000, 1001
AflIII ACRYGT 1 cut(s) 718
AgsI TTSAA 3 cut(s) 139, 309, 476
AjnI CCWGG 2 cut(s) 40, 851
AloI GAACNNNNNNTCC 2 cut(s) 720, 752
AluBI AGCT 8 cut(s) 83, 101, 345, 797, 848, 916, 1037, 1118
AluI AGCT 8 cut(s) 83, 101, 345, 797, 848, 916, 1037, 1118
Alw21I GWGCWC 1 cut(s) 931
Alw44I GTGCAC 1 cut(s) 927
AlwI GGATC 6 cut(s) 387, 603, 736, 868, 883, 1139
AoxI GGCC 4 cut(s) 38, 212, 275, 988
ApaLI GTGCAC 1 cut(s) 927
ApeKI GCWGC 3 cut(s) 848, 913, 1118
ApoI RAATTY 2 cut(s) 134, 331
Asp700I GAANNNNTTC 1 cut(s) 1094
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 3 cut(s) 38, 1007, 1048
AsuHPI GGTGA 2 cut(s) 947, 1020
AsuII TTCGAA 1 cut(s) 643
AvaII GGWCC 2 cut(s) 1007, 1048
BaeGI GKGCMC 1 cut(s) 931
Bbv12I GWGCWC 1 cut(s) 931
BbvI GCAGC 3 cut(s) 835, 925, 1105
BccI CCATC 3 cut(s) 370, 440, 820
BcgI CGANNNNNNTGC 2 cut(s) 318, 352
BciT130I CCWGG 2 cut(s) 42, 853
BciVI GTATCC 1 cut(s) 643
BfaI CTAG 5 cut(s) 237, 383, 414, 905, 1038
BfuI GTATCC 1 cut(s) 643
BisI GCNGC 6 cut(s) 275, 302, 849, 914, 991, 1119
BlsI GCNGC 6 cut(s) 276, 303, 850, 915, 992, 1120
Bme1390I CCNGG 2 cut(s) 42, 853
Bme18I GGWCC 2 cut(s) 1007, 1048
BmgT120I GGNCC 3 cut(s) 38, 1007, 1048
BmiI GGNNCC 1 cut(s) 831
BmrFI CCNGG 2 cut(s) 42, 853
BmrI ACTGGG 1 cut(s) 819
BmsI GCATC 4 cut(s) 420, 556, 709, 955
BmuI ACTGGG 1 cut(s) 819
BpmI CTGGAG 1 cut(s) 816
Bpu14I TTCGAA 1 cut(s) 643
BpuEI CTTGAG 2 cut(s) 828, 1017
BsaBI GATNNNNATC 1 cut(s) 594
BsaJI CCNNGG 1 cut(s) 336
BsaXI ACNNNNNCTCC 2 cut(s) 784, 814
Bsc4I CCNNNNNNNGG 5 cut(s) 47, 809, 898, 1000, 1001
Bse118I RCCGGY 2 cut(s) 670, 1167
Bse1I ACTGG 3 cut(s) 778, 814, 833
Bse3DI GCAATG 2 cut(s) 230, 360
Bse8I GATNNNNATC 1 cut(s) 594
BseBI CCWGG 2 cut(s) 42, 853
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 2 cut(s) 547, 595
BseJI GATNNNNATC 1 cut(s) 594
BseLI CCNNNNNNNGG 5 cut(s) 47, 809, 898, 1000, 1001
BseMI GCAATG 2 cut(s) 230, 360
BseNI ACTGG 3 cut(s) 778, 814, 833
BseRI GAGGAG 2 cut(s) 789, 1081
BseSI GKGCMC 1 cut(s) 931
BseXI GCAGC 3 cut(s) 835, 925, 1105
BseYI CCCAGC 1 cut(s) 109
BsgI GTGCAG 2 cut(s) 54, 699
Bsh1236I CGCG 1 cut(s) 720
BshFI GGCC 4 cut(s) 40, 214, 277, 990
BsiHKAI GWGCWC 1 cut(s) 931
BsiSI CCGG 2 cut(s) 671, 1168
BslFI GGGAC 2 cut(s) 784, 915
BslI CCNNNNNNNGG 5 cut(s) 47, 809, 898, 1000, 1001
BsmFI GGGAC 2 cut(s) 784, 915
BsmI GAATGC 1 cut(s) 119
BsnI GGCC 4 cut(s) 40, 214, 277, 990
Bsp119I TTCGAA 1 cut(s) 643
Bsp1286I GDGCHC 1 cut(s) 931
BspACI CCGC 4 cut(s) 274, 302, 968, 991
BspANI GGCC 4 cut(s) 40, 214, 277, 990
BspFNI CGCG 1 cut(s) 720
BspLI GGNNCC 1 cut(s) 831
BspPI GGATC 6 cut(s) 387, 603, 736, 868, 883, 1139
BspQI GCTCTTC 1 cut(s) 108
BspT104I TTCGAA 1 cut(s) 643
BsrDI GCAATG 2 cut(s) 230, 360
BsrFI RCCGGY 2 cut(s) 670, 1167
BsrI ACTGG 3 cut(s) 778, 814, 833
BssAI RCCGGY 2 cut(s) 670, 1167
BssECI CCNNGG 1 cut(s) 336
Bst2UI CCWGG 2 cut(s) 42, 853
Bst4CI ACNGT 1 cut(s) 627
Bst6I CTCTTC 1 cut(s) 108
BstBI TTCGAA 1 cut(s) 643
BstC8I GCNNGC 2 cut(s) 718, 1169
BstDEI CTNAG 2 cut(s) 97, 1122
BstEII GGTNACC 1 cut(s) 449
BstF5I GGATG 2 cut(s) 547, 595
BstFNI CGCG 1 cut(s) 720
BstHHI GCGC 1 cut(s) 119
BstMWI GCNNNNNNNGC 2 cut(s) 298, 544
BstNI CCWGG 2 cut(s) 42, 853
BstPI GGTNACC 1 cut(s) 449
BstSCI CCNGG 2 cut(s) 40, 851
BstSLI GKGCMC 1 cut(s) 931
BstUI CGCG 1 cut(s) 720
BstV1I GCAGC 3 cut(s) 835, 925, 1105
BstX2I RGATCY 2 cut(s) 379, 595
BstXI CCANNNNNNTGG 1 cut(s) 446
BstYI RGATCY 2 cut(s) 379, 595
BsuI GTATCC 1 cut(s) 643
BsuRI GGCC 4 cut(s) 40, 214, 277, 990
BtgZI GCGATG 2 cut(s) 273, 795
BtsCI GGATG 2 cut(s) 547, 595
Cac8I GCNNGC 2 cut(s) 718, 1169
CfoI GCGC 1 cut(s) 119
Cfr10I RCCGGY 2 cut(s) 670, 1167
Cfr13I GGNCC 3 cut(s) 38, 1007, 1048
Csp6I GTAC 3 cut(s) 792, 807, 973
CviAII CATG 2 cut(s) 497, 893
CviQI GTAC 3 cut(s) 792, 807, 973
DdeI CTNAG 2 cut(s) 97, 1122
DraIII CACNNNGTG 1 cut(s) 935
EaeI YGGCCR 2 cut(s) 275, 988
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco47I GGWCC 2 cut(s) 1007, 1048
Eco57I CTGAAG 1 cut(s) 63
Eco91I GGTNACC 1 cut(s) 449
EcoO65I GGTNACC 1 cut(s) 449
EcoRI GAATTC 1 cut(s) 134
EcoRII CCWGG 2 cut(s) 40, 851
FaeI CATG 2 cut(s) 500, 896
FalI AAGNNNNNCTT 2 cut(s) 527, 559
FaqI GGGAC 2 cut(s) 784, 915
FatI CATG 2 cut(s) 496, 892
FauNDI CATATG 1 cut(s) 217
Fnu4HI GCNGC 6 cut(s) 275, 302, 849, 914, 991, 1119
FokI GGATG 2 cut(s) 534, 602
Fsp4HI GCNGC 6 cut(s) 275, 302, 849, 914, 991, 1119
FspBI CTAG 5 cut(s) 237, 383, 414, 905, 1038
GlaI GCGC 1 cut(s) 118
GluI GCNGC 6 cut(s) 275, 302, 849, 914, 991, 1119
GsaI CCCAGC 1 cut(s) 113
GsuI CTGGAG 1 cut(s) 816
HaeIII GGCC 4 cut(s) 40, 214, 277, 990
HapII CCGG 2 cut(s) 671, 1168
HhaI GCGC 1 cut(s) 119
Hin1II CATG 2 cut(s) 500, 896
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HincII GTYRAC 1 cut(s) 607
HindII GTYRAC 1 cut(s) 607
HinfI GANTC 3 cut(s) 162, 202, 1073
HpaII CCGG 2 cut(s) 671, 1168
HphI GGTGA 2 cut(s) 947, 1020
Hpy166II GTNNAC 3 cut(s) 607, 739, 929
Hpy188I TCNGA 4 cut(s) 133, 167, 694, 1100
Hpy188III TCNNGA 3 cut(s) 266, 551, 877
Hpy8I GTNNAC 3 cut(s) 607, 739, 929
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 5 cut(s) 87, 204, 315, 644, 738
HpyCH4III ACNGT 1 cut(s) 627
HpyCH4V TGCA 9 cut(s) 35, 198, 329, 547, 700, 716, 913, 929, 1043
HpyF10VI GCNNNNNNNGC 2 cut(s) 298, 544
HpyF3I CTNAG 2 cut(s) 97, 1122
Hsp92II CATG 2 cut(s) 500, 896
HspAI GCGC 1 cut(s) 117
KroI GCCGGC 1 cut(s) 1167
KroNI GCCGGC 1 cut(s) 1169
LguI GCTCTTC 1 cut(s) 108
LmnI GCTCC 2 cut(s) 802, 835
Lsp1109I GCAGC 3 cut(s) 835, 925, 1105
LweI GCATC 4 cut(s) 420, 556, 709, 955
MaeI CTAG 5 cut(s) 237, 383, 414, 905, 1038
MaeIII GTNAC 4 cut(s) 6, 312, 449, 572
MboII GAAGA 3 cut(s) 95, 958, 1102
MflI RGATCY 2 cut(s) 379, 595
MhlI GDGCHC 1 cut(s) 931
MluCI AATT 7 cut(s) 134, 188, 331, 470, 610, 708, 883
MluI ACGCGT 1 cut(s) 718
MlyI GAGTC 1 cut(s) 171
MmeI TCCRAC 1 cut(s) 1118
MroNI GCCGGC 1 cut(s) 1167
MroXI GAANNNNTTC 1 cut(s) 1094
MseI TTAA 4 cut(s) 15, 191, 615, 1158
MslI CAYNNNNRTG 1 cut(s) 444
MspA1I CMGCKG 1 cut(s) 1118
MspI CCGG 2 cut(s) 671, 1168
MspR9I CCNGG 2 cut(s) 42, 853
Mva1269I GAATGC 1 cut(s) 119
MvaI CCWGG 2 cut(s) 42, 853
MvnI CGCG 1 cut(s) 720
MwoI GCNNNNNNNGC 2 cut(s) 298, 544
NaeI GCCGGC 1 cut(s) 1169
NdeI CATATG 1 cut(s) 217
NgoMIV GCCGGC 1 cut(s) 1167
NlaIII CATG 2 cut(s) 500, 896
NlaIV GGNNCC 1 cut(s) 831
NmuCI GTSAC 1 cut(s) 6
NspV TTCGAA 1 cut(s) 643
PciSI GCTCTTC 1 cut(s) 108
PctI GAATGC 1 cut(s) 119
PdiI GCCGGC 1 cut(s) 1169
PdmI GAANNNNTTC 1 cut(s) 1094
PfeI GAWTC 2 cut(s) 202, 1073
PflMI CCANNNNNTGG 1 cut(s) 47
PkrI GCNGC 6 cut(s) 276, 303, 850, 915, 992, 1120
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
Psp6I CCWGG 2 cut(s) 40, 851
PspEI GGTNACC 1 cut(s) 449
PspFI CCCAGC 1 cut(s) 109
PspGI CCWGG 2 cut(s) 40, 851
PspN4I GGNNCC 1 cut(s) 831
PspPI GGNCC 3 cut(s) 38, 1007, 1048
PsuI RGATCY 2 cut(s) 379, 595
PvuII CAGCTG 1 cut(s) 1118
RsaI GTAC 3 cut(s) 793, 808, 974
RsaNI GTAC 3 cut(s) 792, 807, 973
RseI CAYNNNNRTG 1 cut(s) 444
SapI GCTCTTC 1 cut(s) 108
SaqAI TTAA 4 cut(s) 15, 191, 615, 1158
SatI GCNGC 6 cut(s) 275, 302, 849, 914, 991, 1119
Sau96I GGNCC 3 cut(s) 38, 1007, 1048
SchI GAGTC 1 cut(s) 171
ScrFI CCNGG 2 cut(s) 42, 853
SduI GDGCHC 1 cut(s) 931
SfaNI GCATC 4 cut(s) 420, 556, 709, 955
SfuI TTCGAA 1 cut(s) 643
SinI GGWCC 2 cut(s) 1007, 1048
SmiMI CAYNNNNRTG 1 cut(s) 444
SmlI CTYRAG 2 cut(s) 843, 1032
SmoI CTYRAG 2 cut(s) 843, 1032
Sse9I AATT 7 cut(s) 134, 188, 331, 470, 610, 708, 883
SsiI CCGC 4 cut(s) 274, 302, 968, 991
SspI AATATT 1 cut(s) 952
SspMI CTAG 5 cut(s) 237, 383, 414, 905, 1038
StyD4I CCNGG 2 cut(s) 40, 851
TaaI ACNGT 1 cut(s) 627
TaqI TCGA 3 cut(s) 510, 643, 940
TaqII GACCGA 1 cut(s) 328
TasI AATT 7 cut(s) 134, 188, 331, 470, 610, 708, 883
TatI WGTACW 2 cut(s) 791, 806
TauI GCSGC 3 cut(s) 277, 304, 993
TfiI GAWTC 2 cut(s) 202, 1073
Tru1I TTAA 4 cut(s) 15, 191, 615, 1158
Tru9I TTAA 4 cut(s) 15, 191, 615, 1158
TseFI GTSAC 1 cut(s) 6
TseI GCWGC 3 cut(s) 848, 913, 1118
Tsp45I GTSAC 1 cut(s) 6
TspDTI ATGAA 6 cut(s) 17, 52, 112, 485, 798, 1103
Van91I CCANNNNNTGG 1 cut(s) 47
VneI GTGCAC 1 cut(s) 927
VpaK11BI GGWCC 2 cut(s) 1007, 1048
XapI RAATTY 2 cut(s) 134, 331
XmnI GAANNNNTTC 1 cut(s) 1094
XspI CTAG 5 cut(s) 237, 383, 414, 905, 1038
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.