Rroxscaffold_6G00426170

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0012632
Physical Location & Seq
Reverse (-)
46982434 .. 46984617
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00426170.1

Sequence Viewer

Length: 840 bp
ATGCTCGTCTCCTCCCAGCCACCTTCAAAGTTATACCAGAACAGTGCAAATTCTTCGATCAGCTTATTAGCGATGGCCGTCGGGATTAAGCAGAAAGATCTAGTCGGTAAAATGGTCAAAAAGTTTCTGTCAAGTGGTTTTGTTGTGATGCTTTTTCATTATGATGGTAACGTTGATGAGTGGAAGCAATTTCAATGGAATGATCTTGTCATTCATGTGTCTGCAGTCAATCAAACAAAATGGTGGTTCGCTAAGCGTTTCTTACATCCTGATATAGTTGCTGAATATAGTTACATTTTTCTATGGGATGAGGACCTTGGAGTTGACAATTTCAATCCTCAACGTTACGTGTCCATTGTTCGAAAGGAAGGTCTTGAAATATCACAACCGGCACTTGATTTTTCCAAGTCAGAGGTGCATCATCAAATTACTGCACGCGTGAAAGGATCAACAGTGCATAGAAGGACTTACAAGCCTAATGCTAATGGGACTGGTTGCGATGAACACAGTAAAGCTCCTCCTTGTACCGGGTGGATAGAATTGATGGCTCCAGTTTTCTCTCGAGCTGCCTGGCGTTGCGTATGGTATATGATCCAGGGTAATCGAATGAAGAAAATTGGTGTCGTAGATGCTGAGTACATAATCCATTATGGCCGCCCTACTTTGGGAGGTCCGGACGAAAATGAGAAATTACCTCAGTCTATTGCAAAGGACCATAGAGTTGATGTGAGGAGGGAATCCTACAATGAAATGAAGATCTTCAGAAGAAAATGGGAGCGTGCTGCGAAGAACGATGAGTGTTGGATTGATCCATACCCTGTTAACAGTAGCCGGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

279

Amino Acids

32.31

Weight (kDa)

9.12

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 14 - 263 1.1e-110 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 438
AccIII TCCGGA 1 cut(s) 673
AciI CCGC 1 cut(s) 655
AclI AACGTT 2 cut(s) 171, 343
AclWI GGATC 3 cut(s) 454, 586, 803
AcoI YGGCCR 2 cut(s) 75, 652
AcsI RAATTY 1 cut(s) 49
AcuI CTGAAG 1 cut(s) 745
AfaI GTAC 2 cut(s) 526, 638
AfiI CCNNNNNNNGG 3 cut(s) 527, 664, 665
AflIII ACRYGT 2 cut(s) 348, 436
AgsI TTSAA 4 cut(s) 27, 194, 334, 377
AjnI CCWGG 2 cut(s) 569, 594
AluBI AGCT 3 cut(s) 63, 515, 566
AluI AGCT 3 cut(s) 63, 515, 566
Alw26I GTCTC 1 cut(s) 13
AlwI GGATC 3 cut(s) 454, 586, 803
Ama87I CYCGRG 1 cut(s) 561
Aor13HI TCCGGA 1 cut(s) 673
AoxI GGCC 2 cut(s) 75, 652
ApeKI GCWGC 2 cut(s) 566, 782
ApoI RAATTY 1 cut(s) 49
ArsI GACNNNNNNTTYG 2 cut(s) 355, 387
Asp700I GAANNNNTTC 1 cut(s) 758
AspS9I GGNCC 3 cut(s) 313, 671, 712
AsuC2I CCSGG 1 cut(s) 529
AsuII TTCGAA 1 cut(s) 361
AvaI CYCGRG 1 cut(s) 561
AvaII GGWCC 3 cut(s) 313, 671, 712
BbvI GCAGC 2 cut(s) 553, 769
BccI CCATC 3 cut(s) 67, 158, 538
BceAI ACGGC 1 cut(s) 62
BcgI CGANNNNNNTGC 2 cut(s) 36, 70
BciT130I CCWGG 2 cut(s) 571, 596
BcnI CCSGG 1 cut(s) 529
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 1 cut(s) 101
BfmI CTRYAG 1 cut(s) 222
BglII AGATCT 2 cut(s) 97, 756
BisI GCNGC 3 cut(s) 567, 655, 783
BlpI GCTNAGC 1 cut(s) 252
BlsI GCNGC 3 cut(s) 568, 656, 784
Bme1390I CCNGG 3 cut(s) 529, 571, 596
Bme18I GGWCC 3 cut(s) 313, 671, 712
BmeT110I CYCGRG 1 cut(s) 561
BmgT120I GGNCC 3 cut(s) 313, 671, 712
BmiI GGNNCC 1 cut(s) 549
BmrFI CCNGG 3 cut(s) 529, 571, 596
BmsI GCATC 3 cut(s) 138, 427, 619
BpmI CTGGAG 1 cut(s) 534
Bpu1102I GCTNAGC 1 cut(s) 252
Bpu14I TTCGAA 1 cut(s) 361
BpuMI CCSGG 1 cut(s) 529
BsaAI YACGTR 1 cut(s) 349
BsaJI CCNNGG 2 cut(s) 316, 595
BsaWI WCCGGW 1 cut(s) 673
Bsc4I CCNNNNNNNGG 3 cut(s) 527, 664, 665
Bse118I RCCGGY 2 cut(s) 388, 831
Bse1I ACTGG 2 cut(s) 496, 551
BseAI TCCGGA 1 cut(s) 673
BseBI CCWGG 2 cut(s) 571, 596
BseDI CCNNGG 2 cut(s) 316, 595
BseGI GGATG 2 cut(s) 265, 313
BseLI CCNNNNNNNGG 3 cut(s) 527, 664, 665
BseMII CTCAG 2 cut(s) 624, 710
BseNI ACTGG 2 cut(s) 496, 551
BseRI GAGGAG 2 cut(s) 507, 745
BseXI GCAGC 2 cut(s) 553, 769
BseYI CCCAGC 1 cut(s) 15
BsgI GTGCAG 1 cut(s) 417
Bsh1236I CGCG 1 cut(s) 438
BshFI GGCC 2 cut(s) 77, 654
BsiHKCI CYCGRG 1 cut(s) 561
BsiSI CCGG 4 cut(s) 389, 528, 674, 832
BslFI GGGAC 1 cut(s) 502
BslI CCNNNNNNNGG 3 cut(s) 527, 664, 665
BsmAI GTCTC 1 cut(s) 13
BsmBI CGTCTC 1 cut(s) 13
BsmFI GGGAC 1 cut(s) 502
BsnI GGCC 2 cut(s) 77, 654
BsoBI CYCGRG 1 cut(s) 561
Bsp119I TTCGAA 1 cut(s) 361
Bsp13I TCCGGA 1 cut(s) 673
Bsp143I GATC 7 cut(s) 57, 97, 202, 446, 591, 756, 808
Bsp1720I GCTNAGC 1 cut(s) 252
BspACI CCGC 1 cut(s) 655
BspANI GGCC 2 cut(s) 77, 654
BspCNI CTCAG 2 cut(s) 625, 709
BspEI TCCGGA 1 cut(s) 673
BspFNI CGCG 1 cut(s) 438
BspLI GGNNCC 1 cut(s) 549
BspMAI CTGCAG 1 cut(s) 226
BspPI GGATC 3 cut(s) 454, 586, 803
BspT104I TTCGAA 1 cut(s) 361
BsrFI RCCGGY 2 cut(s) 388, 831
BsrI ACTGG 2 cut(s) 496, 551
BssAI RCCGGY 2 cut(s) 388, 831
BssECI CCNNGG 2 cut(s) 316, 595
BssMI GATC 7 cut(s) 57, 97, 202, 446, 591, 756, 808
BssT1I CCWWGG 1 cut(s) 316
Bst2UI CCWGG 2 cut(s) 571, 596
Bst4CI ACNGT 4 cut(s) 44, 454, 509, 827
BstBAI YACGTR 1 cut(s) 349
BstBI TTCGAA 1 cut(s) 361
BstC8I GCNNGC 3 cut(s) 436, 780, 833
BstDEI CTNAG 3 cut(s) 252, 633, 696
BstF5I GGATG 2 cut(s) 265, 313
BstFNI CGCG 1 cut(s) 438
BstKTI GATC 7 cut(s) 60, 100, 205, 449, 594, 759, 811
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 7 cut(s) 57, 97, 202, 446, 591, 756, 808
BstNI CCWGG 2 cut(s) 571, 596
BstSCI CCNGG 3 cut(s) 527, 569, 594
BstSFI CTRYAG 1 cut(s) 222
BstUI CGCG 1 cut(s) 438
BstV1I GCAGC 2 cut(s) 553, 769
BstX2I RGATCY 2 cut(s) 97, 756
BstYI RGATCY 2 cut(s) 97, 756
BsuRI GGCC 2 cut(s) 77, 654
BtgZI GCGATG 2 cut(s) 86, 513
BtsCI GGATG 2 cut(s) 265, 313
BtsIMutI CAGTG 2 cut(s) 49, 459
Cac8I GCNNGC 3 cut(s) 436, 780, 833
Cfr10I RCCGGY 2 cut(s) 388, 831
Cfr13I GGNCC 3 cut(s) 313, 671, 712
Csp6I GTAC 2 cut(s) 525, 637
CviAII CATG 1 cut(s) 215
CviJI RGCY 9 cut(s) 19, 63, 77, 475, 515, 548, 566, 654, 831
CviKI_1 RGCY 9 cut(s) 19, 63, 77, 475, 515, 548, 566, 654, 831
CviQI GTAC 2 cut(s) 525, 637
DdeI CTNAG 3 cut(s) 252, 633, 696
DpnI GATC 7 cut(s) 59, 99, 204, 448, 593, 758, 810
DpnII GATC 7 cut(s) 57, 97, 202, 446, 591, 756, 808
EaeI YGGCCR 2 cut(s) 75, 652
Eco130I CCWWGG 1 cut(s) 316
Eco47I GGWCC 3 cut(s) 313, 671, 712
Eco57I CTGAAG 1 cut(s) 745
Eco88I CYCGRG 1 cut(s) 561
EcoO109I RGGNCCY 1 cut(s) 313
EcoRII CCWGG 2 cut(s) 569, 594
EcoT14I CCWWGG 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 316
Esp3I CGTCTC 1 cut(s) 13
FaeI CATG 1 cut(s) 218
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FaqI GGGAC 1 cut(s) 502
FatI CATG 1 cut(s) 214
Fnu4HI GCNGC 3 cut(s) 567, 655, 783
FokI GGATG 2 cut(s) 252, 320
Fsp4HI GCNGC 3 cut(s) 567, 655, 783
FspBI CTAG 1 cut(s) 101
GluI GCNGC 3 cut(s) 567, 655, 783
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 534
HaeIII GGCC 2 cut(s) 77, 654
HapII CCGG 4 cut(s) 389, 528, 674, 832
Hin1II CATG 1 cut(s) 218
HincII GTYRAC 2 cut(s) 325, 823
HindII GTYRAC 2 cut(s) 325, 823
HinfI GANTC 1 cut(s) 737
HpaI GTTAAC 1 cut(s) 823
HpaII CCGG 4 cut(s) 389, 528, 674, 832
Hpy166II GTNNAC 2 cut(s) 325, 823
Hpy188I TCNGA 2 cut(s) 412, 764
Hpy188III TCNNGA 5 cut(s) 82, 269, 374, 561, 674
Hpy8I GTNNAC 2 cut(s) 325, 823
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 3 cut(s) 33, 362, 456
HpyCH4III ACNGT 4 cut(s) 44, 454, 509, 827
HpyCH4IV ACGT 3 cut(s) 171, 343, 348
HpyCH4V TGCA 6 cut(s) 47, 224, 418, 434, 457, 707
HpyF3I CTNAG 3 cut(s) 252, 633, 696
HpySE526I ACGT 3 cut(s) 171, 343, 348
Hsp92II CATG 1 cut(s) 218
Kpn2I TCCGGA 1 cut(s) 673
KroI GCCGGC 1 cut(s) 831
KroNI GCCGGC 1 cut(s) 833
KspAI GTTAAC 1 cut(s) 823
Kzo9I GATC 7 cut(s) 57, 97, 202, 446, 591, 756, 808
LmnI GCTCC 3 cut(s) 520, 553, 775
Lsp1109I GCAGC 2 cut(s) 553, 769
LweI GCATC 3 cut(s) 138, 427, 619
MaeI CTAG 1 cut(s) 101
MaeII ACGT 3 cut(s) 171, 343, 348
MaeIII GTNAC 3 cut(s) 167, 290, 344
MalI GATC 7 cut(s) 59, 99, 204, 448, 593, 758, 810
MboI GATC 7 cut(s) 57, 97, 202, 446, 591, 756, 808
MboII GAAGA 6 cut(s) 45, 622, 751, 766, 777, 799
MflI RGATCY 2 cut(s) 97, 756
MluCI AATT 7 cut(s) 49, 188, 328, 426, 539, 615, 689
MluI ACGCGT 1 cut(s) 436
MmeI TCCRAC 1 cut(s) 782
MnlI CCTC 9 cut(s) 22, 304, 348, 406, 528, 662, 705, 723, 726
MroI TCCGGA 1 cut(s) 673
MroNI GCCGGC 1 cut(s) 831
MroXI GAANNNNTTC 1 cut(s) 758
MseI TTAA 2 cut(s) 87, 822
MslI CAYNNNNRTG 2 cut(s) 162, 215
MspI CCGG 4 cut(s) 389, 528, 674, 832
MspR9I CCNGG 3 cut(s) 529, 571, 596
MvaI CCWGG 2 cut(s) 571, 596
MvnI CGCG 1 cut(s) 438
NaeI GCCGGC 1 cut(s) 833
NciI CCSGG 1 cut(s) 529
NdeII GATC 7 cut(s) 57, 97, 202, 446, 591, 756, 808
NgoMIV GCCGGC 1 cut(s) 831
NlaIII CATG 1 cut(s) 218
NlaIV GGNNCC 1 cut(s) 549
NspV TTCGAA 1 cut(s) 361
PaeR7I CTCGAG 1 cut(s) 561
PdiI GCCGGC 1 cut(s) 833
PdmI GAANNNNTTC 1 cut(s) 758
PfeI GAWTC 1 cut(s) 737
PkrI GCNGC 3 cut(s) 568, 656, 784
Ppu21I YACGTR 1 cut(s) 349
PpuMI RGGWCCY 1 cut(s) 313
Psp1406I AACGTT 2 cut(s) 171, 343
Psp5II RGGWCCY 1 cut(s) 313
Psp6I CCWGG 2 cut(s) 569, 594
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 2 cut(s) 569, 594
PspN4I GGNNCC 1 cut(s) 549
PspPI GGNCC 3 cut(s) 313, 671, 712
PspPPI RGGWCCY 1 cut(s) 313
PstI CTGCAG 1 cut(s) 226
PsuI RGATCY 2 cut(s) 97, 756
RsaI GTAC 2 cut(s) 526, 638
RsaNI GTAC 2 cut(s) 525, 637
RseI CAYNNNNRTG 2 cut(s) 162, 215
SaqAI TTAA 2 cut(s) 87, 822
SatI GCNGC 3 cut(s) 567, 655, 783
Sau3AI GATC 7 cut(s) 57, 97, 202, 446, 591, 756, 808
Sau96I GGNCC 3 cut(s) 313, 671, 712
ScrFI CCNGG 3 cut(s) 529, 571, 596
SfaNI GCATC 3 cut(s) 138, 427, 619
SfcI CTRYAG 1 cut(s) 222
Sfr274I CTCGAG 1 cut(s) 561
SfuI TTCGAA 1 cut(s) 361
SinI GGWCC 3 cut(s) 313, 671, 712
SlaI CTCGAG 1 cut(s) 561
SmiMI CAYNNNNRTG 2 cut(s) 162, 215
SmlI CTYRAG 1 cut(s) 561
SmoI CTYRAG 1 cut(s) 561
Sse9I AATT 7 cut(s) 49, 188, 328, 426, 539, 615, 689
SsiI CCGC 1 cut(s) 655
SspMI CTAG 1 cut(s) 101
StyD4I CCNGG 3 cut(s) 527, 569, 594
StyI CCWWGG 1 cut(s) 316
TaaI ACNGT 4 cut(s) 44, 454, 509, 827
TaiI ACGT 3 cut(s) 174, 346, 351
TaqI TCGA 4 cut(s) 56, 361, 562, 604
TasI AATT 7 cut(s) 49, 188, 328, 426, 539, 615, 689
TatI WGTACW 1 cut(s) 636
TauI GCSGC 1 cut(s) 657
TfiI GAWTC 1 cut(s) 737
Tru1I TTAA 2 cut(s) 87, 822
Tru9I TTAA 2 cut(s) 87, 822
TscAI CASTG 2 cut(s) 49, 459
TseI GCWGC 2 cut(s) 566, 782
TspDTI ATGAA 6 cut(s) 146, 203, 516, 623, 762, 767
TspRI CASTG 2 cut(s) 49, 459
VpaK11BI GGWCC 3 cut(s) 313, 671, 712
XapI RAATTY 1 cut(s) 49
XhoI CTCGAG 1 cut(s) 561
XmnI GAANNNNTTC 1 cut(s) 758
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.