RchiOBHm_Chr3g0447981

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0012632
Physical Location & Seq
Reverse (-)
423613 .. 427065
3453 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41543

Sequence Viewer

Length: 1203 bp
ATGAAGCCACCATCCAGTCCTATATCTTTGGGTGCAAAGCCAAGAAGTGGGAGATCATGCATTTGTAGGTTTTTCCCTCCAGCTTCTTTGATGGTTGTAGTTGTAGTCCTGCTAGGGAGTGCATTCATGTTATCAAAATTCAATGAGCAATCATCATTTTCGACAGTCAAAAACAGTTTGCGGAGAATAAATTTCAAATGCAAGAGTCACAGAAGGCCATATGGAAGTGAACCATTGCCTAGAGGTATCGTCTCCCAGACTTCTAATCTAGAAATGCAGCCATTGTGGAGAACGCCTAACACGCCACCTTCAAAGTTATACCAGAAAAGTGCAAATTCTTCGATCAGCTTATTAGCGATGGCTGTCGGGATTAAGCAGAAAGATCTAGTCGGTAAAATGGTCAAAAAGTTTCTGTCAAGTGGTTTTGTTGTGATGCTTTTTCATTATGATGGTAACGTTGATGAGTGGAAGCAATTTCAATGGAATGATCTTGTCATTCATGTGTCTGCAGTCAATCAAACAAAATGGTGGTTCGCTAAGCGTTTCTTACATCCTGATATAGTTGCTCAATATAGTTACATTTTTCTATGGGATGAGGACCTTGGAGTTGACAATTTCAATCCTCAACGGTATGTGTCCATTGTTCGAAAGGAAGGTCTTGAAATATCACAACCGGCACTTGATTTTTCCCAGTCAGAGGTGCATCATCAAATTACTGCACGCGTGAAAGGATCAACAGTGCATAGAAGGACTTACAAGCCTAATGCCAATGGGACTGGTTGCGATGAACACAGTAAAGCTCCTCCCTGTACCGGGTGGATAGAATTGATGGCTCCAGTTTTCTCTCGAGCTGCCTGGCGTTGCGTATGGTATATGATCCAGAATAACTTGATCCATGCTTGGGGACTAGATATGCAGCTTGGCTATTGTGCACAGGCAAGCTCCTTAATGTATCTGCATGGTAATCGAATGAAGAAAATTGGTGTCGTAGATGCTGAGTACATAATCCATTATGGCCGCCCTACTTTGGGAGGTCCGGACGAAAATGAGAAATTACCTCAGTCTATTGCAAAGGACCATAGAGTTGATGTGAGGAGGGAATCCTACAACGAAATGAAGATCTTCAGAAGAAAATGGGAGCGAGCTGCGAAGAACGATGAGTGTTGGATTGATCCATACCCTGTTAACAGTAGCCGGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

400

Amino Acids

45.86

Weight (kDa)

9.59

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 72 - 384 1.3e-137 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 47
AccII CGCG 1 cut(s) 723
AccIII TCCGGA 1 cut(s) 1036
AciI CCGC 2 cut(s) 181, 1018
AclI AACGTT 1 cut(s) 456
AclWI GGATC 4 cut(s) 739, 871, 886, 1166
AcoI YGGCCR 1 cut(s) 1015
AcsI RAATTY 3 cut(s) 137, 190, 334
AcuI CTGAAG 1 cut(s) 1108
AfaI GTAC 2 cut(s) 811, 1001
AfiI CCNNNNNNNGG 7 cut(s) 47, 697, 812, 813, 901, 1027, 1028
AflIII ACRYGT 1 cut(s) 721
AgsI TTSAA 6 cut(s) 142, 196, 312, 479, 619, 662
AjnI CCWGG 1 cut(s) 854
AluBI AGCT 7 cut(s) 83, 348, 800, 851, 919, 942, 1145
AluI AGCT 7 cut(s) 83, 348, 800, 851, 919, 942, 1145
Alw21I GWGCWC 1 cut(s) 934
Alw26I GTCTC 1 cut(s) 256
Alw44I GTGCAC 1 cut(s) 930
AlwI GGATC 4 cut(s) 739, 871, 886, 1166
Ama87I CYCGRG 1 cut(s) 846
Aor13HI TCCGGA 1 cut(s) 1036
AoxI GGCC 2 cut(s) 215, 1015
ApaLI GTGCAC 1 cut(s) 930
ApeKI GCWGC 4 cut(s) 277, 851, 916, 1145
ApoI RAATTY 3 cut(s) 137, 190, 334
ArsI GACNNNNNNTTYG 2 cut(s) 640, 672
Asp700I GAANNNNTTC 1 cut(s) 1121
AspS9I GGNCC 3 cut(s) 598, 1034, 1075
AsuC2I CCSGG 1 cut(s) 814
AsuII TTCGAA 1 cut(s) 646
AvaI CYCGRG 1 cut(s) 846
AvaII GGWCC 3 cut(s) 598, 1034, 1075
BaeGI GKGCMC 1 cut(s) 934
Bbv12I GWGCWC 1 cut(s) 934
BbvI GCAGC 4 cut(s) 289, 838, 928, 1132
BccI CCATC 5 cut(s) 19, 85, 352, 443, 823
BcgI CGANNNNNNTGC 4 cut(s) 321, 355, 947, 981
BciT130I CCWGG 1 cut(s) 856
BcnI CCSGG 1 cut(s) 814
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 5 cut(s) 113, 240, 269, 386, 908
BfmI CTRYAG 1 cut(s) 507
BglII AGATCT 2 cut(s) 382, 1119
BisI GCNGC 5 cut(s) 278, 852, 917, 1018, 1146
BlpI GCTNAGC 1 cut(s) 537
BlsI GCNGC 5 cut(s) 279, 853, 918, 1019, 1147
Bme1390I CCNGG 2 cut(s) 814, 856
Bme18I GGWCC 3 cut(s) 598, 1034, 1075
BmeT110I CYCGRG 1 cut(s) 846
BmgT120I GGNCC 3 cut(s) 598, 1034, 1075
BmiI GGNNCC 1 cut(s) 834
BmrFI CCNGG 2 cut(s) 814, 856
BmrI ACTGGG 1 cut(s) 685
BmsI GCATC 3 cut(s) 423, 712, 982
BmuI ACTGGG 1 cut(s) 685
BpmI CTGGAG 2 cut(s) 63, 819
Bpu1102I GCTNAGC 1 cut(s) 537
Bpu14I TTCGAA 1 cut(s) 646
BpuMI CCSGG 1 cut(s) 814
BsaJI CCNNGG 1 cut(s) 601
BsaWI WCCGGW 1 cut(s) 1036
Bsc4I CCNNNNNNNGG 7 cut(s) 47, 697, 812, 813, 901, 1027, 1028
Bse118I RCCGGY 2 cut(s) 673, 1194
Bse1I ACTGG 4 cut(s) 15, 691, 781, 836
Bse3DI GCAATG 1 cut(s) 233
BseAI TCCGGA 1 cut(s) 1036
BseBI CCWGG 1 cut(s) 856
BseDI CCNNGG 1 cut(s) 601
BseGI GGATG 3 cut(s) 11, 550, 598
BseLI CCNNNNNNNGG 7 cut(s) 47, 697, 812, 813, 901, 1027, 1028
BseMI GCAATG 1 cut(s) 233
BseMII CTCAG 2 cut(s) 987, 1073
BseNI ACTGG 4 cut(s) 15, 691, 781, 836
BseRI GAGGAG 2 cut(s) 792, 1108
BseSI GKGCMC 1 cut(s) 934
BseXI GCAGC 4 cut(s) 289, 838, 928, 1132
BsgI GTGCAG 1 cut(s) 702
Bsh1236I CGCG 1 cut(s) 723
BshFI GGCC 2 cut(s) 217, 1017
BsiHKAI GWGCWC 1 cut(s) 934
BsiHKCI CYCGRG 1 cut(s) 846
BsiSI CCGG 4 cut(s) 674, 813, 1037, 1195
BslFI GGGAC 2 cut(s) 787, 918
BslI CCNNNNNNNGG 7 cut(s) 47, 697, 812, 813, 901, 1027, 1028
BsmAI GTCTC 1 cut(s) 256
BsmBI CGTCTC 1 cut(s) 256
BsmFI GGGAC 2 cut(s) 787, 918
BsmI GAATGC 1 cut(s) 122
BsnI GGCC 2 cut(s) 217, 1017
BsoBI CYCGRG 1 cut(s) 846
Bsp119I TTCGAA 1 cut(s) 646
Bsp1286I GDGCHC 1 cut(s) 934
Bsp13I TCCGGA 1 cut(s) 1036
Bsp143I GATC 9 cut(s) 53, 342, 382, 487, 731, 876, 891, 1119, 1171
Bsp1720I GCTNAGC 1 cut(s) 537
BspACI CCGC 2 cut(s) 181, 1018
BspANI GGCC 2 cut(s) 217, 1017
BspCNI CTCAG 2 cut(s) 988, 1072
BspEI TCCGGA 1 cut(s) 1036
BspFNI CGCG 1 cut(s) 723
BspLI GGNNCC 1 cut(s) 834
BspMAI CTGCAG 1 cut(s) 511
BspPI GGATC 4 cut(s) 739, 871, 886, 1166
BspT104I TTCGAA 1 cut(s) 646
BsrDI GCAATG 1 cut(s) 233
BsrFI RCCGGY 2 cut(s) 673, 1194
BsrI ACTGG 4 cut(s) 15, 691, 781, 836
BssAI RCCGGY 2 cut(s) 673, 1194
BssECI CCNNGG 1 cut(s) 601
BssMI GATC 9 cut(s) 53, 342, 382, 487, 731, 876, 891, 1119, 1171
BssT1I CCWWGG 1 cut(s) 601
Bst2UI CCWGG 1 cut(s) 856
Bst4CI ACNGT 6 cut(s) 166, 176, 630, 739, 794, 1190
BstBI TTCGAA 1 cut(s) 646
BstC8I GCNNGC 4 cut(s) 721, 940, 1143, 1196
BstDEI CTNAG 3 cut(s) 537, 996, 1059
BstF5I GGATG 3 cut(s) 11, 550, 598
BstFNI CGCG 1 cut(s) 723
BstKTI GATC 9 cut(s) 56, 345, 385, 490, 734, 879, 894, 1122, 1174
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 9 cut(s) 53, 342, 382, 487, 731, 876, 891, 1119, 1171
BstMWI GCNNNNNNNGC 1 cut(s) 301
BstNI CCWGG 1 cut(s) 856
BstSCI CCNGG 2 cut(s) 812, 854
BstSFI CTRYAG 1 cut(s) 507
BstSLI GKGCMC 1 cut(s) 934
BstUI CGCG 1 cut(s) 723
BstV1I GCAGC 4 cut(s) 289, 838, 928, 1132
BstX2I RGATCY 2 cut(s) 382, 1119
BstYI RGATCY 2 cut(s) 382, 1119
BsuRI GGCC 2 cut(s) 217, 1017
BtgZI GCGATG 2 cut(s) 371, 798
BtsCI GGATG 3 cut(s) 11, 550, 598
BtsIMutI CAGTG 1 cut(s) 744
Cac8I GCNNGC 4 cut(s) 721, 940, 1143, 1196
Cfr10I RCCGGY 2 cut(s) 673, 1194
Cfr13I GGNCC 3 cut(s) 598, 1034, 1075
Csp6I GTAC 2 cut(s) 810, 1000
CviAII CATG 5 cut(s) 57, 127, 500, 896, 959
CviQI GTAC 2 cut(s) 810, 1000
DdeI CTNAG 3 cut(s) 537, 996, 1059
DpnI GATC 9 cut(s) 55, 344, 384, 489, 733, 878, 893, 1121, 1173
DpnII GATC 9 cut(s) 53, 342, 382, 487, 731, 876, 891, 1119, 1171
EaeI YGGCCR 1 cut(s) 1015
Eco130I CCWWGG 1 cut(s) 601
Eco47I GGWCC 3 cut(s) 598, 1034, 1075
Eco57I CTGAAG 1 cut(s) 1108
Eco88I CYCGRG 1 cut(s) 846
EcoO109I RGGNCCY 1 cut(s) 598
EcoRII CCWGG 1 cut(s) 854
EcoT14I CCWWGG 1 cut(s) 601
EcoT22I ATGCAT 1 cut(s) 62
ErhI CCWWGG 1 cut(s) 601
Esp3I CGTCTC 1 cut(s) 256
FaeI CATG 5 cut(s) 60, 130, 503, 899, 962
FalI AAGNNNNNCTT 2 cut(s) 530, 562
FaqI GGGAC 2 cut(s) 787, 918
FatI CATG 5 cut(s) 56, 126, 499, 895, 958
FauNDI CATATG 1 cut(s) 220
Fnu4HI GCNGC 5 cut(s) 278, 852, 917, 1018, 1146
FokI GGATG 2 cut(s) 537, 605
Fsp4HI GCNGC 5 cut(s) 278, 852, 917, 1018, 1146
FspBI CTAG 5 cut(s) 113, 240, 269, 386, 908
GluI GCNGC 5 cut(s) 278, 852, 917, 1018, 1146
GsuI CTGGAG 2 cut(s) 63, 819
HaeIII GGCC 2 cut(s) 217, 1017
HapII CCGG 4 cut(s) 674, 813, 1037, 1195
Hin1II CATG 5 cut(s) 60, 130, 503, 899, 962
HincII GTYRAC 2 cut(s) 610, 1186
HindII GTYRAC 2 cut(s) 610, 1186
HinfI GANTC 2 cut(s) 205, 1100
HpaI GTTAAC 1 cut(s) 1186
HpaII CCGG 4 cut(s) 674, 813, 1037, 1195
Hpy166II GTNNAC 4 cut(s) 230, 610, 932, 1186
Hpy188I TCNGA 2 cut(s) 697, 1127
Hpy188III TCNNGA 7 cut(s) 269, 367, 554, 659, 846, 880, 1037
Hpy8I GTNNAC 4 cut(s) 230, 610, 932, 1186
HpyAV CCTTC 4 cut(s) 207, 318, 647, 741
HpyCH4III ACNGT 6 cut(s) 166, 176, 630, 739, 794, 1190
HpyCH4IV ACGT 1 cut(s) 456
HpyF10VI GCNNNNNNNGC 1 cut(s) 301
HpyF3I CTNAG 3 cut(s) 537, 996, 1059
HpySE526I ACGT 1 cut(s) 456
Hsp92II CATG 5 cut(s) 60, 130, 503, 899, 962
Kpn2I TCCGGA 1 cut(s) 1036
KroI GCCGGC 1 cut(s) 1194
KroNI GCCGGC 1 cut(s) 1196
KspAI GTTAAC 1 cut(s) 1186
Kzo9I GATC 9 cut(s) 53, 342, 382, 487, 731, 876, 891, 1119, 1171
LmnI GCTCC 4 cut(s) 805, 838, 947, 1138
Lsp1109I GCAGC 4 cut(s) 289, 838, 928, 1132
LweI GCATC 3 cut(s) 423, 712, 982
MaeI CTAG 5 cut(s) 113, 240, 269, 386, 908
MaeII ACGT 1 cut(s) 456
MaeIII GTNAC 3 cut(s) 206, 452, 575
MalI GATC 9 cut(s) 55, 344, 384, 489, 733, 878, 893, 1121, 1173
MboI GATC 9 cut(s) 53, 342, 382, 487, 731, 876, 891, 1119, 1171
MboII GAAGA 6 cut(s) 330, 985, 1114, 1129, 1140, 1162
MflI RGATCY 2 cut(s) 382, 1119
MhlI GDGCHC 1 cut(s) 934
MluCI AATT 9 cut(s) 137, 190, 334, 473, 613, 711, 824, 978, 1052
MluI ACGCGT 1 cut(s) 721
MlyI GAGTC 1 cut(s) 214
MmeI TCCRAC 1 cut(s) 1145
Mph1103I ATGCAT 1 cut(s) 62
MroI TCCGGA 1 cut(s) 1036
MroNI GCCGGC 1 cut(s) 1194
MroXI GAANNNNTTC 1 cut(s) 1121
MseI TTAA 3 cut(s) 372, 947, 1185
MslI CAYNNNNRTG 2 cut(s) 447, 500
MspI CCGG 4 cut(s) 674, 813, 1037, 1195
MspR9I CCNGG 2 cut(s) 814, 856
Mva1269I GAATGC 1 cut(s) 122
MvaI CCWGG 1 cut(s) 856
MvnI CGCG 1 cut(s) 723
MwoI GCNNNNNNNGC 1 cut(s) 301
NaeI GCCGGC 1 cut(s) 1196
NciI CCSGG 1 cut(s) 814
NdeI CATATG 1 cut(s) 220
NdeII GATC 9 cut(s) 53, 342, 382, 487, 731, 876, 891, 1119, 1171
NgoMIV GCCGGC 1 cut(s) 1194
NlaIII CATG 5 cut(s) 60, 130, 503, 899, 962
NlaIV GGNNCC 1 cut(s) 834
NmuCI GTSAC 1 cut(s) 206
NsiI ATGCAT 1 cut(s) 62
NspV TTCGAA 1 cut(s) 646
PaeR7I CTCGAG 1 cut(s) 846
PctI GAATGC 1 cut(s) 122
PdiI GCCGGC 1 cut(s) 1196
PdmI GAANNNNTTC 1 cut(s) 1121
PfeI GAWTC 1 cut(s) 1100
PflMI CCANNNNNTGG 1 cut(s) 47
PkrI GCNGC 5 cut(s) 279, 853, 918, 1019, 1147
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
PpuMI RGGWCCY 1 cut(s) 598
Psp1406I AACGTT 1 cut(s) 456
Psp5II RGGWCCY 1 cut(s) 598
Psp6I CCWGG 1 cut(s) 854
PspGI CCWGG 1 cut(s) 854
PspN4I GGNNCC 1 cut(s) 834
PspPI GGNCC 3 cut(s) 598, 1034, 1075
PspPPI RGGWCCY 1 cut(s) 598
PstI CTGCAG 1 cut(s) 511
PsuI RGATCY 2 cut(s) 382, 1119
RsaI GTAC 2 cut(s) 811, 1001
RsaNI GTAC 2 cut(s) 810, 1000
RseI CAYNNNNRTG 2 cut(s) 447, 500
SaqAI TTAA 3 cut(s) 372, 947, 1185
SatI GCNGC 5 cut(s) 278, 852, 917, 1018, 1146
Sau3AI GATC 9 cut(s) 53, 342, 382, 487, 731, 876, 891, 1119, 1171
Sau96I GGNCC 3 cut(s) 598, 1034, 1075
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 2 cut(s) 814, 856
SduI GDGCHC 1 cut(s) 934
SfaNI GCATC 3 cut(s) 423, 712, 982
SfcI CTRYAG 1 cut(s) 507
Sfr274I CTCGAG 1 cut(s) 846
SfuI TTCGAA 1 cut(s) 646
SinI GGWCC 3 cut(s) 598, 1034, 1075
SlaI CTCGAG 1 cut(s) 846
SmiMI CAYNNNNRTG 2 cut(s) 447, 500
SmlI CTYRAG 1 cut(s) 846
SmoI CTYRAG 1 cut(s) 846
Sse9I AATT 9 cut(s) 137, 190, 334, 473, 613, 711, 824, 978, 1052
SsiI CCGC 2 cut(s) 181, 1018
SspMI CTAG 5 cut(s) 113, 240, 269, 386, 908
StyD4I CCNGG 2 cut(s) 812, 854
StyI CCWWGG 1 cut(s) 601
TaaI ACNGT 6 cut(s) 166, 176, 630, 739, 794, 1190
TaiI ACGT 1 cut(s) 459
TaqI TCGA 5 cut(s) 161, 341, 646, 847, 967
TasI AATT 9 cut(s) 137, 190, 334, 473, 613, 711, 824, 978, 1052
TatI WGTACW 1 cut(s) 999
TauI GCSGC 1 cut(s) 1020
TfiI GAWTC 1 cut(s) 1100
Tru1I TTAA 3 cut(s) 372, 947, 1185
Tru9I TTAA 3 cut(s) 372, 947, 1185
TscAI CASTG 1 cut(s) 744
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 4 cut(s) 277, 851, 916, 1145
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 7 cut(s) 17, 115, 431, 488, 801, 986, 1130
TspRI CASTG 1 cut(s) 744
Van91I CCANNNNNTGG 1 cut(s) 47
VneI GTGCAC 1 cut(s) 930
VpaK11BI GGWCC 3 cut(s) 598, 1034, 1075
XapI RAATTY 3 cut(s) 137, 190, 334
XbaI TCTAGA 1 cut(s) 268
XhoI CTCGAG 1 cut(s) 846
XmnI GAANNNNTTC 1 cut(s) 1121
XspI CTAG 5 cut(s) 113, 240, 269, 386, 908
Zsp2I ATGCAT 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.