Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005969.1

Orthogroup ID

OG0012632

Physical Location & Seq

Genomic Coordinates Reverse (-)

29222 .. 32257

Gene Structure 3036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005969.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atgaagccaccatccagtcctatatctttgggtgcaaagccaagaagtgggagatcatgcatttgcaggtttttccctccagcttctttgatggttgtagttgtagtcctgctagggagtgcattcatgttatcaaaattcaatgagcaatcatcattttcgacagtcaaaaacagtttgcggagaataaatttcaaatgcaagaatcacagaaggccatatggaagtgaaccattgcctagaggtatcgtctcccagacttctaatctagaaatgcagccattgtggagaacgcctaacacgccaccttcaaagttataccagaacagtgcaaattcttcgatcagcttattagcgatggctgtcgggattaagcagaaagatctagtcggtaaaatggtcaaaaagtttctgtcaagtggttttgttgtgatgctttttcattatgatggtaacgttgatgattggaagcaatttcaatggaatgatcttgtcattcatgtgtctgcagtcaatcaaacaaaatggtggttcgctaagcgtttcttacatcctgatatagttgctcaatatagttacatttttctatgggatgaggaccttggagttgacaatttcaatcctcaacggtatgtgtccattgttcgaaaggaaggtcttgaaatatcacaaccggcacttgatttttccaagtcagaggtgcatcatcaaattactgcacgcgtgaaaggatcaacagtgcatagaaggacttacaagcctaatgccaatgggactggttgcgatgaacacagtaaagctcctccttgtaccgggtggatagaattgatggctccagttttctctcgagctgcctggcgttgcgtatggtatatgatccagaataacttgatccatgcttggggactagatatgcagcttggctattgtgcacagggtaatcgaatgaagaaaattggtgtcgtagatgctgagtacataatccattatggccgccctactttgggaggtccggacgaaaatgagaaattacctcagtctattgcaaaggaccatagagttgatgtgaggagggaatcctacaacgaaatgaagatcttcagaagaaaatgggagcgagctgcgaagaacgatgagtgttggattgatccataccctgttaacagtagccggcactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF707

Protein Analysis

392

Amino Acids

44.95

Weight (kDa)

9.61

Isoelectric Point (pI)

45.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00590 FvH4_6g00630
malus_domestica	MD04G1243900.v1.1 MD12G1259600.v1.1
prunus_persica	Prupe.6G360400_v2.0.a1 Prupe.6G360400_v2.0.a1 Prupe.6G360400_v2.0.a1
pyrus_communis	pycom04g21480
rosa_chinensis	RchiOBHm_Chr3g0447981
rosa_laevigata	RLG00000025955
rosa_multiflora	Rmu_sc0005969.1_g000010
rosa_roxburghii	Rroxscaffold_6G00426170
rosa_rugosa	Rorug02G0607600
rosa_samantha	Rh3AG006800 Rh3BG006500 Rh3CG006700 Rh3DG007100
rosa_wichuraiana	Rw0G020020 Rw3G000550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	57
AccB7I	CCANNNNNTGG	1 cut(s)	47
AccII	CGCG	1 cut(s)	723
AccIII	TCCGGA	1 cut(s)	1012
AciI	CCGC	2 cut(s)	181, 994
AclI	AACGTT	1 cut(s)	456
AclWI	GGATC	4 cut(s)	739, 871, 886, 1142
AcoI	YGGCCR	1 cut(s)	991
AcsI	RAATTY	3 cut(s)	137, 190, 334
AcuI	CTGAAG	1 cut(s)	1084
AfaI	GTAC	2 cut(s)	811, 977
AfiI	CCNNNNNNNGG	5 cut(s)	47, 812, 901, 1003, 1004
AflIII	ACRYGT	1 cut(s)	721
AgsI	TTSAA	6 cut(s)	142, 196, 312, 479, 619, 662
AjnI	CCWGG	1 cut(s)	854
AluBI	AGCT	6 cut(s)	83, 348, 800, 851, 919, 1121
AluI	AGCT	6 cut(s)	83, 348, 800, 851, 919, 1121
Alw21I	GWGCWC	1 cut(s)	934
Alw26I	GTCTC	1 cut(s)	256
Alw44I	GTGCAC	1 cut(s)	930
AlwI	GGATC	4 cut(s)	739, 871, 886, 1142
Ama87I	CYCGRG	1 cut(s)	846
Aor13HI	TCCGGA	1 cut(s)	1012
AoxI	GGCC	2 cut(s)	215, 991
ApaLI	GTGCAC	1 cut(s)	930
ApeKI	GCWGC	4 cut(s)	277, 851, 916, 1121
ApoI	RAATTY	3 cut(s)	137, 190, 334
ArsI	GACNNNNNNTTYG	2 cut(s)	640, 672
Asp700I	GAANNNNTTC	1 cut(s)	1097
AspS9I	GGNCC	3 cut(s)	598, 1010, 1051
AsuC2I	CCSGG	1 cut(s)	814
AsuII	TTCGAA	1 cut(s)	646
AvaI	CYCGRG	1 cut(s)	846
AvaII	GGWCC	3 cut(s)	598, 1010, 1051
BaeGI	GKGCMC	1 cut(s)	934
Bbv12I	GWGCWC	1 cut(s)	934
BbvI	GCAGC	4 cut(s)	289, 838, 928, 1108
BccI	CCATC	5 cut(s)	19, 85, 352, 443, 823
BcgI	CGANNNNNNTGC	2 cut(s)	321, 355
BciT130I	CCWGG	1 cut(s)	856
BcnI	CCSGG	1 cut(s)	814
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	5 cut(s)	113, 240, 269, 386, 908
BfmI	CTRYAG	1 cut(s)	507
BfuAI	ACCTGC	1 cut(s)	57
BglII	AGATCT	2 cut(s)	382, 1095
BisI	GCNGC	5 cut(s)	278, 852, 917, 994, 1122
BlpI	GCTNAGC	1 cut(s)	537
BlsI	GCNGC	5 cut(s)	279, 853, 918, 995, 1123
Bme1390I	CCNGG	2 cut(s)	814, 856
Bme18I	GGWCC	3 cut(s)	598, 1010, 1051
BmeT110I	CYCGRG	1 cut(s)	846
BmgT120I	GGNCC	3 cut(s)	598, 1010, 1051
BmiI	GGNNCC	1 cut(s)	834
BmrFI	CCNGG	2 cut(s)	814, 856
BmsI	GCATC	3 cut(s)	423, 712, 958
BpmI	CTGGAG	2 cut(s)	63, 819
Bpu1102I	GCTNAGC	1 cut(s)	537
Bpu14I	TTCGAA	1 cut(s)	646
BpuMI	CCSGG	1 cut(s)	814
BsaJI	CCNNGG	1 cut(s)	601
BsaWI	WCCGGW	1 cut(s)	1012
Bsc4I	CCNNNNNNNGG	5 cut(s)	47, 812, 901, 1003, 1004
Bse118I	RCCGGY	2 cut(s)	673, 1170
Bse1I	ACTGG	3 cut(s)	15, 781, 836
Bse3DI	GCAATG	1 cut(s)	233
BseAI	TCCGGA	1 cut(s)	1012
BseBI	CCWGG	1 cut(s)	856
BseDI	CCNNGG	1 cut(s)	601
BseGI	GGATG	3 cut(s)	11, 550, 598
BseLI	CCNNNNNNNGG	5 cut(s)	47, 812, 901, 1003, 1004
BseMI	GCAATG	1 cut(s)	233
BseMII	CTCAG	2 cut(s)	963, 1049
BseNI	ACTGG	3 cut(s)	15, 781, 836
BseRI	GAGGAG	2 cut(s)	792, 1084
BseSI	GKGCMC	1 cut(s)	934
BseXI	GCAGC	4 cut(s)	289, 838, 928, 1108
BsgI	GTGCAG	1 cut(s)	702
Bsh1236I	CGCG	1 cut(s)	723
BshFI	GGCC	2 cut(s)	217, 993
BsiHKAI	GWGCWC	1 cut(s)	934
BsiHKCI	CYCGRG	1 cut(s)	846
BsiSI	CCGG	4 cut(s)	674, 813, 1013, 1171
BslFI	GGGAC	2 cut(s)	787, 918
BslI	CCNNNNNNNGG	5 cut(s)	47, 812, 901, 1003, 1004
BsmAI	GTCTC	1 cut(s)	256
BsmBI	CGTCTC	1 cut(s)	256
BsmFI	GGGAC	2 cut(s)	787, 918
BsmI	GAATGC	1 cut(s)	122
BsnI	GGCC	2 cut(s)	217, 993
BsoBI	CYCGRG	1 cut(s)	846
Bsp119I	TTCGAA	1 cut(s)	646
Bsp1286I	GDGCHC	1 cut(s)	934
Bsp13I	TCCGGA	1 cut(s)	1012
Bsp143I	GATC	9 cut(s)	53, 342, 382, 487, 731, 876, 891, 1095, 1147
Bsp1720I	GCTNAGC	1 cut(s)	537
BspACI	CCGC	2 cut(s)	181, 994
BspANI	GGCC	2 cut(s)	217, 993
BspCNI	CTCAG	2 cut(s)	964, 1048
BspEI	TCCGGA	1 cut(s)	1012
BspFNI	CGCG	1 cut(s)	723
BspLI	GGNNCC	1 cut(s)	834
BspMAI	CTGCAG	1 cut(s)	511
BspMI	ACCTGC	1 cut(s)	57
BspPI	GGATC	4 cut(s)	739, 871, 886, 1142
BspT104I	TTCGAA	1 cut(s)	646
BsrDI	GCAATG	1 cut(s)	233
BsrFI	RCCGGY	2 cut(s)	673, 1170
BsrI	ACTGG	3 cut(s)	15, 781, 836
BssAI	RCCGGY	2 cut(s)	673, 1170
BssECI	CCNNGG	1 cut(s)	601
BssMI	GATC	9 cut(s)	53, 342, 382, 487, 731, 876, 891, 1095, 1147
BssT1I	CCWWGG	1 cut(s)	601
Bst2UI	CCWGG	1 cut(s)	856
Bst4CI	ACNGT	7 cut(s)	166, 176, 329, 630, 739, 794, 1166
BstBI	TTCGAA	1 cut(s)	646
BstC8I	GCNNGC	3 cut(s)	721, 1119, 1172
BstDEI	CTNAG	3 cut(s)	537, 972, 1035
BstF5I	GGATG	3 cut(s)	11, 550, 598
BstFNI	CGCG	1 cut(s)	723
BstKTI	GATC	9 cut(s)	56, 345, 385, 490, 734, 879, 894, 1098, 1150
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	9 cut(s)	53, 342, 382, 487, 731, 876, 891, 1095, 1147
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstNI	CCWGG	1 cut(s)	856
BstSCI	CCNGG	2 cut(s)	812, 854
BstSFI	CTRYAG	1 cut(s)	507
BstSLI	GKGCMC	1 cut(s)	934
BstUI	CGCG	1 cut(s)	723
BstV1I	GCAGC	4 cut(s)	289, 838, 928, 1108
BstX2I	RGATCY	2 cut(s)	382, 1095
BstYI	RGATCY	2 cut(s)	382, 1095
BsuRI	GGCC	2 cut(s)	217, 993
BtgZI	GCGATG	2 cut(s)	371, 798
BtsCI	GGATG	3 cut(s)	11, 550, 598
BtsIMutI	CAGTG	2 cut(s)	334, 744
BveI	ACCTGC	1 cut(s)	57
Cac8I	GCNNGC	3 cut(s)	721, 1119, 1172
Cfr10I	RCCGGY	2 cut(s)	673, 1170
Cfr13I	GGNCC	3 cut(s)	598, 1010, 1051
Csp6I	GTAC	2 cut(s)	810, 976
CviAII	CATG	4 cut(s)	57, 127, 500, 896
CviQI	GTAC	2 cut(s)	810, 976
DdeI	CTNAG	3 cut(s)	537, 972, 1035
DpnI	GATC	9 cut(s)	55, 344, 384, 489, 733, 878, 893, 1097, 1149
DpnII	GATC	9 cut(s)	53, 342, 382, 487, 731, 876, 891, 1095, 1147
EaeI	YGGCCR	1 cut(s)	991
Eco130I	CCWWGG	1 cut(s)	601
Eco47I	GGWCC	3 cut(s)	598, 1010, 1051
Eco57I	CTGAAG	1 cut(s)	1084
Eco88I	CYCGRG	1 cut(s)	846
EcoO109I	RGGNCCY	1 cut(s)	598
EcoRII	CCWGG	1 cut(s)	854
EcoT14I	CCWWGG	1 cut(s)	601
EcoT22I	ATGCAT	1 cut(s)	62
ErhI	CCWWGG	1 cut(s)	601
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	4 cut(s)	60, 130, 503, 899
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FaqI	GGGAC	2 cut(s)	787, 918
FatI	CATG	4 cut(s)	56, 126, 499, 895
FauNDI	CATATG	1 cut(s)	220
Fnu4HI	GCNGC	5 cut(s)	278, 852, 917, 994, 1122
FokI	GGATG	2 cut(s)	537, 605
Fsp4HI	GCNGC	5 cut(s)	278, 852, 917, 994, 1122
FspBI	CTAG	5 cut(s)	113, 240, 269, 386, 908
GluI	GCNGC	5 cut(s)	278, 852, 917, 994, 1122
GsuI	CTGGAG	2 cut(s)	63, 819
HaeIII	GGCC	2 cut(s)	217, 993
HapII	CCGG	4 cut(s)	674, 813, 1013, 1171
Hin1II	CATG	4 cut(s)	60, 130, 503, 899
HincII	GTYRAC	2 cut(s)	610, 1162
HindII	GTYRAC	2 cut(s)	610, 1162
HinfI	GANTC	2 cut(s)	205, 1076
HpaI	GTTAAC	1 cut(s)	1162
HpaII	CCGG	4 cut(s)	674, 813, 1013, 1171
Hpy166II	GTNNAC	4 cut(s)	230, 610, 932, 1162
Hpy188I	TCNGA	2 cut(s)	697, 1103
Hpy188III	TCNNGA	7 cut(s)	269, 367, 554, 659, 846, 880, 1013
Hpy8I	GTNNAC	4 cut(s)	230, 610, 932, 1162
HpyAV	CCTTC	4 cut(s)	207, 318, 647, 741
HpyCH4III	ACNGT	7 cut(s)	166, 176, 329, 630, 739, 794, 1166
HpyCH4IV	ACGT	1 cut(s)	456
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
HpyF3I	CTNAG	3 cut(s)	537, 972, 1035
HpySE526I	ACGT	1 cut(s)	456
Hsp92II	CATG	4 cut(s)	60, 130, 503, 899
Kpn2I	TCCGGA	1 cut(s)	1012
KroI	GCCGGC	1 cut(s)	1170
KroNI	GCCGGC	1 cut(s)	1172
KspAI	GTTAAC	1 cut(s)	1162
Kzo9I	GATC	9 cut(s)	53, 342, 382, 487, 731, 876, 891, 1095, 1147
LmnI	GCTCC	3 cut(s)	805, 838, 1114
Lsp1109I	GCAGC	4 cut(s)	289, 838, 928, 1108
LweI	GCATC	3 cut(s)	423, 712, 958
MaeI	CTAG	5 cut(s)	113, 240, 269, 386, 908
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	2 cut(s)	452, 575
MalI	GATC	9 cut(s)	55, 344, 384, 489, 733, 878, 893, 1097, 1149
MboI	GATC	9 cut(s)	53, 342, 382, 487, 731, 876, 891, 1095, 1147
MboII	GAAGA	6 cut(s)	330, 961, 1090, 1105, 1116, 1138
MflI	RGATCY	2 cut(s)	382, 1095
MhlI	GDGCHC	1 cut(s)	934
MluCI	AATT	9 cut(s)	137, 190, 334, 473, 613, 711, 824, 954, 1028
MluI	ACGCGT	1 cut(s)	721
MmeI	TCCRAC	1 cut(s)	1121
Mph1103I	ATGCAT	1 cut(s)	62
MroI	TCCGGA	1 cut(s)	1012
MroNI	GCCGGC	1 cut(s)	1170
MroXI	GAANNNNTTC	1 cut(s)	1097
MseI	TTAA	2 cut(s)	372, 1161
MslI	CAYNNNNRTG	2 cut(s)	447, 500
MspI	CCGG	4 cut(s)	674, 813, 1013, 1171
MspR9I	CCNGG	2 cut(s)	814, 856
Mva1269I	GAATGC	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	856
MvnI	CGCG	1 cut(s)	723
MwoI	GCNNNNNNNGC	1 cut(s)	301
NaeI	GCCGGC	1 cut(s)	1172
NciI	CCSGG	1 cut(s)	814
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	9 cut(s)	53, 342, 382, 487, 731, 876, 891, 1095, 1147
NgoMIV	GCCGGC	1 cut(s)	1170
NlaIII	CATG	4 cut(s)	60, 130, 503, 899
NlaIV	GGNNCC	1 cut(s)	834
NsiI	ATGCAT	1 cut(s)	62
NspV	TTCGAA	1 cut(s)	646
PaeR7I	CTCGAG	1 cut(s)	846
PctI	GAATGC	1 cut(s)	122
PdiI	GCCGGC	1 cut(s)	1172
PdmI	GAANNNNTTC	1 cut(s)	1097
PfeI	GAWTC	2 cut(s)	205, 1076
PflMI	CCANNNNNTGG	1 cut(s)	47
PkrI	GCNGC	5 cut(s)	279, 853, 918, 995, 1123
PpuMI	RGGWCCY	1 cut(s)	598
Psp1406I	AACGTT	1 cut(s)	456
Psp5II	RGGWCCY	1 cut(s)	598
Psp6I	CCWGG	1 cut(s)	854
PspGI	CCWGG	1 cut(s)	854
PspN4I	GGNNCC	1 cut(s)	834
PspPI	GGNCC	3 cut(s)	598, 1010, 1051
PspPPI	RGGWCCY	1 cut(s)	598
PstI	CTGCAG	1 cut(s)	511
PsuI	RGATCY	2 cut(s)	382, 1095
RsaI	GTAC	2 cut(s)	811, 977
RsaNI	GTAC	2 cut(s)	810, 976
RseI	CAYNNNNRTG	2 cut(s)	447, 500
SaqAI	TTAA	2 cut(s)	372, 1161
SatI	GCNGC	5 cut(s)	278, 852, 917, 994, 1122
Sau3AI	GATC	9 cut(s)	53, 342, 382, 487, 731, 876, 891, 1095, 1147
Sau96I	GGNCC	3 cut(s)	598, 1010, 1051
ScrFI	CCNGG	2 cut(s)	814, 856
SduI	GDGCHC	1 cut(s)	934
SfaNI	GCATC	3 cut(s)	423, 712, 958
SfcI	CTRYAG	1 cut(s)	507
Sfr274I	CTCGAG	1 cut(s)	846
SfuI	TTCGAA	1 cut(s)	646
SinI	GGWCC	3 cut(s)	598, 1010, 1051
SlaI	CTCGAG	1 cut(s)	846
SmiMI	CAYNNNNRTG	2 cut(s)	447, 500
SmlI	CTYRAG	1 cut(s)	846
SmoI	CTYRAG	1 cut(s)	846
Sse9I	AATT	9 cut(s)	137, 190, 334, 473, 613, 711, 824, 954, 1028
SsiI	CCGC	2 cut(s)	181, 994
SspMI	CTAG	5 cut(s)	113, 240, 269, 386, 908
StyD4I	CCNGG	2 cut(s)	812, 854
StyI	CCWWGG	1 cut(s)	601
TaaI	ACNGT	7 cut(s)	166, 176, 329, 630, 739, 794, 1166
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	5 cut(s)	161, 341, 646, 847, 943
TasI	AATT	9 cut(s)	137, 190, 334, 473, 613, 711, 824, 954, 1028
TatI	WGTACW	1 cut(s)	975
TauI	GCSGC	1 cut(s)	996
TfiI	GAWTC	2 cut(s)	205, 1076
Tru1I	TTAA	2 cut(s)	372, 1161
Tru9I	TTAA	2 cut(s)	372, 1161
TscAI	CASTG	2 cut(s)	334, 744
TseI	GCWGC	4 cut(s)	277, 851, 916, 1121
TspDTI	ATGAA	7 cut(s)	17, 115, 431, 488, 801, 962, 1106
TspRI	CASTG	2 cut(s)	334, 744
Van91I	CCANNNNNTGG	1 cut(s)	47
VneI	GTGCAC	1 cut(s)	930
VpaK11BI	GGWCC	3 cut(s)	598, 1010, 1051
XapI	RAATTY	3 cut(s)	137, 190, 334
XbaI	TCTAGA	1 cut(s)	268
XhoI	CTCGAG	1 cut(s)	846
XmnI	GAANNNNTTC	1 cut(s)	1097
XspI	CTAG	5 cut(s)	113, 240, 269, 386, 908
Zsp2I	ATGCAT	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.