Rh3AG006800

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0012632
Physical Location & Seq
Reverse (-)
453153 .. 456531
3379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG006800.1

Sequence Viewer

Length: 1179 bp
ATGAAGCCACCATCCAGTCCTATATCTTTGGGTGCAAAGCCAAGAAGTGGGAGATCATGCATTTGTAGGTTTTTCCCTCCAGCTTCTTTGATGGTTGTAGTTGTAGTCCTGCTAGGGAGTGCATTCATGTTATCAAAATTCAATGAGCAATCATCATTTTCGACAGTCAAAAACAGTTTGCGGAGAATAAATTTCAAATGCAAGAATCACAGAAGGCCATATGGAAGTGAACCATTGCCTAGAGGTATCGTCTCCCAGACTTCTAATCTAGAAATGCAGCCATTGTGGAGAACGCCTAACACGCCACCTTCAAAGTTATACCAGAACAGTGCAAATTCTTCGATCAGCTTATTAGCGATGGCCGTCGGGATTAAGCAGAAAGATCTAGTCGGTAAAATGGTCAAAAAGTTTCTGTCAAGTGGTTTTGTTGTGATGCTTTTTCATTATGATGGTAACGTTGATGAGTGGAAGCAATTTCAATGGAATGATCTTGTCATTCATGTGTCTGCAGTCAATCAAACAAAATGGTGGTTCGCTAAGCGTTTCTTACATCCCGATATAGTTGCTCAATATAGTTACATTTTTCTATGGGATGAGGACCTTGGAGTCGACAATTTCGATCCTCAACGGTATGTGTCCATTGTTCGAAAGGAAGGTCTTGAAATATCACAACCGGCACTTGATTTTTCCAAGTCAGAGGTGCATCATCAAATTACTGCACGCGTGAAAGGATCAACAGTGCATAGAAGGACTTACAAGCCTAATGCCAATGGGACTGGTTGCGATGAACACAGTAAAGCTCCTCCTTGTACAGGGTGGATAGAATTGATGGCTCCAGTTTTCTCTCGAGCTGCCTGGCGTTGCGTATGGTATATGATCCAGAATAACTTGATCCATGCTTGGGGACTAGATATGCAGCTTGGCTATTGTGCACAGGGTAATCGAATGAAGAAAATTGGTGTCGTAGATGCTGAGTACATAATCCATTATGGCCGCCCTACTTTGGGAGGTCCGGACGAAAATGAGAAATTACCTCAGTCTATTGCAAAGGACCACAGAGTTGATGTGAGGAGGGAATCCTACAACGAAATGAAGATCTTCAGAAGAAAATGGGAGCGAGCTGCGAGGAACGATGAGTGTTGGATTGATCCATACCCTGTTAACAGTAGCCGGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

392

Amino Acids

45.0

Weight (kDa)

9.57

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 72 - 376 2.1e-141 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 605
AccB7I CCANNNNNTGG 1 cut(s) 47
AccI GTMKAC 1 cut(s) 609
AccII CGCG 1 cut(s) 723
AccIII TCCGGA 1 cut(s) 1012
AciI CCGC 2 cut(s) 181, 994
AclI AACGTT 1 cut(s) 456
AclWI GGATC 5 cut(s) 614, 739, 871, 886, 1142
AcoI YGGCCR 2 cut(s) 360, 991
AcsI RAATTY 3 cut(s) 137, 190, 334
AcuI CTGAAG 1 cut(s) 1084
AfaI GTAC 2 cut(s) 811, 977
AfiI CCNNNNNNNGG 5 cut(s) 47, 812, 901, 1003, 1004
AflIII ACRYGT 1 cut(s) 721
AgsI TTSAA 5 cut(s) 142, 196, 312, 479, 662
AjnI CCWGG 1 cut(s) 854
AluBI AGCT 6 cut(s) 83, 348, 800, 851, 919, 1121
AluI AGCT 6 cut(s) 83, 348, 800, 851, 919, 1121
Alw21I GWGCWC 1 cut(s) 934
Alw26I GTCTC 1 cut(s) 256
Alw44I GTGCAC 1 cut(s) 930
AlwI GGATC 5 cut(s) 614, 739, 871, 886, 1142
Ama87I CYCGRG 1 cut(s) 846
Aor13HI TCCGGA 1 cut(s) 1012
AoxI GGCC 3 cut(s) 215, 360, 991
ApaLI GTGCAC 1 cut(s) 930
ApeKI GCWGC 4 cut(s) 277, 851, 916, 1121
ApoI RAATTY 3 cut(s) 137, 190, 334
ArsI GACNNNNNNTTYG 2 cut(s) 640, 672
Asp700I GAANNNNTTC 1 cut(s) 1097
AspS9I GGNCC 3 cut(s) 598, 1010, 1051
AsuII TTCGAA 1 cut(s) 646
AvaI CYCGRG 1 cut(s) 846
AvaII GGWCC 3 cut(s) 598, 1010, 1051
BaeGI GKGCMC 1 cut(s) 934
Bbv12I GWGCWC 1 cut(s) 934
BbvI GCAGC 4 cut(s) 289, 838, 928, 1108
BccI CCATC 5 cut(s) 19, 85, 352, 443, 823
BceAI ACGGC 1 cut(s) 347
BcgI CGANNNNNNTGC 4 cut(s) 321, 355, 545, 579
BciT130I CCWGG 1 cut(s) 856
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 5 cut(s) 113, 240, 269, 386, 908
BfmI CTRYAG 1 cut(s) 507
BglII AGATCT 2 cut(s) 382, 1095
BisI GCNGC 5 cut(s) 278, 852, 917, 994, 1122
BlpI GCTNAGC 1 cut(s) 537
BlsI GCNGC 5 cut(s) 279, 853, 918, 995, 1123
Bme1390I CCNGG 1 cut(s) 856
Bme18I GGWCC 3 cut(s) 598, 1010, 1051
BmeT110I CYCGRG 1 cut(s) 846
BmgT120I GGNCC 3 cut(s) 598, 1010, 1051
BmiI GGNNCC 1 cut(s) 834
BmrFI CCNGG 1 cut(s) 856
BmsI GCATC 3 cut(s) 423, 712, 958
BpmI CTGGAG 2 cut(s) 63, 819
Bpu1102I GCTNAGC 1 cut(s) 537
Bpu14I TTCGAA 1 cut(s) 646
BsaJI CCNNGG 1 cut(s) 601
BsaWI WCCGGW 1 cut(s) 1012
Bsc4I CCNNNNNNNGG 5 cut(s) 47, 812, 901, 1003, 1004
Bse118I RCCGGY 2 cut(s) 673, 1170
Bse1I ACTGG 3 cut(s) 15, 781, 836
Bse3DI GCAATG 1 cut(s) 233
BseAI TCCGGA 1 cut(s) 1012
BseBI CCWGG 1 cut(s) 856
BseDI CCNNGG 1 cut(s) 601
BseGI GGATG 3 cut(s) 11, 550, 598
BseLI CCNNNNNNNGG 5 cut(s) 47, 812, 901, 1003, 1004
BseMI GCAATG 1 cut(s) 233
BseMII CTCAG 2 cut(s) 963, 1049
BseNI ACTGG 3 cut(s) 15, 781, 836
BseRI GAGGAG 2 cut(s) 792, 1084
BseSI GKGCMC 1 cut(s) 934
BseXI GCAGC 4 cut(s) 289, 838, 928, 1108
BsgI GTGCAG 1 cut(s) 702
Bsh1236I CGCG 1 cut(s) 723
BshFI GGCC 3 cut(s) 217, 362, 993
BsiHKAI GWGCWC 1 cut(s) 934
BsiHKCI CYCGRG 1 cut(s) 846
BsiSI CCGG 3 cut(s) 674, 1013, 1171
BslFI GGGAC 2 cut(s) 787, 918
BslI CCNNNNNNNGG 5 cut(s) 47, 812, 901, 1003, 1004
BsmAI GTCTC 1 cut(s) 256
BsmBI CGTCTC 1 cut(s) 256
BsmFI GGGAC 2 cut(s) 787, 918
BsmI GAATGC 1 cut(s) 122
BsnI GGCC 3 cut(s) 217, 362, 993
BsoBI CYCGRG 1 cut(s) 846
Bsp119I TTCGAA 1 cut(s) 646
Bsp1286I GDGCHC 1 cut(s) 934
Bsp13I TCCGGA 1 cut(s) 1012
Bsp1407I TGTACA 1 cut(s) 809
Bsp1720I GCTNAGC 1 cut(s) 537
BspACI CCGC 2 cut(s) 181, 994
BspANI GGCC 3 cut(s) 217, 362, 993
BspCNI CTCAG 2 cut(s) 964, 1048
BspEI TCCGGA 1 cut(s) 1012
BspFNI CGCG 1 cut(s) 723
BspLI GGNNCC 1 cut(s) 834
BspMAI CTGCAG 1 cut(s) 511
BspPI GGATC 5 cut(s) 614, 739, 871, 886, 1142
BspT104I TTCGAA 1 cut(s) 646
BsrDI GCAATG 1 cut(s) 233
BsrFI RCCGGY 2 cut(s) 673, 1170
BsrGI TGTACA 1 cut(s) 809
BsrI ACTGG 3 cut(s) 15, 781, 836
BssAI RCCGGY 2 cut(s) 673, 1170
BssECI CCNNGG 1 cut(s) 601
BssT1I CCWWGG 1 cut(s) 601
Bst2UI CCWGG 1 cut(s) 856
Bst4CI ACNGT 7 cut(s) 166, 176, 329, 630, 739, 794, 1166
BstAUI TGTACA 1 cut(s) 809
BstBI TTCGAA 1 cut(s) 646
BstC8I GCNNGC 3 cut(s) 721, 1119, 1172
BstDEI CTNAG 3 cut(s) 537, 972, 1035
BstENI CCTNNNNNAGG 1 cut(s) 810
BstF5I GGATG 3 cut(s) 11, 550, 598
BstFNI CGCG 1 cut(s) 723
BstMAI GTCTC 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 301
BstNI CCWGG 1 cut(s) 856
BstSCI CCNGG 1 cut(s) 854
BstSFI CTRYAG 1 cut(s) 507
BstSLI GKGCMC 1 cut(s) 934
BstUI CGCG 1 cut(s) 723
BstV1I GCAGC 4 cut(s) 289, 838, 928, 1108
BstX2I RGATCY 2 cut(s) 382, 1095
BstYI RGATCY 2 cut(s) 382, 1095
BsuRI GGCC 3 cut(s) 217, 362, 993
BtgZI GCGATG 2 cut(s) 371, 798
BtsCI GGATG 3 cut(s) 11, 550, 598
BtsIMutI CAGTG 2 cut(s) 334, 744
Cac8I GCNNGC 3 cut(s) 721, 1119, 1172
Cfr10I RCCGGY 2 cut(s) 673, 1170
Cfr13I GGNCC 3 cut(s) 598, 1010, 1051
Csp6I GTAC 2 cut(s) 810, 976
CviAII CATG 4 cut(s) 57, 127, 500, 896
CviQI GTAC 2 cut(s) 810, 976
DdeI CTNAG 3 cut(s) 537, 972, 1035
DrdI GACNNNNNNGTC 1 cut(s) 605
DseDI GACNNNNNNGTC 1 cut(s) 605
EaeI YGGCCR 2 cut(s) 360, 991
Eco130I CCWWGG 1 cut(s) 601
Eco47I GGWCC 3 cut(s) 598, 1010, 1051
Eco57I CTGAAG 1 cut(s) 1084
Eco88I CYCGRG 1 cut(s) 846
EcoNI CCTNNNNNAGG 1 cut(s) 810
EcoO109I RGGNCCY 1 cut(s) 598
EcoRII CCWGG 1 cut(s) 854
EcoT14I CCWWGG 1 cut(s) 601
EcoT22I ATGCAT 1 cut(s) 62
ErhI CCWWGG 1 cut(s) 601
Esp3I CGTCTC 1 cut(s) 256
FaeI CATG 4 cut(s) 60, 130, 503, 899
FalI AAGNNNNNCTT 2 cut(s) 530, 562
FaqI GGGAC 2 cut(s) 787, 918
FatI CATG 4 cut(s) 56, 126, 499, 895
FauNDI CATATG 1 cut(s) 220
FblI GTMKAC 1 cut(s) 609
Fnu4HI GCNGC 5 cut(s) 278, 852, 917, 994, 1122
FokI GGATG 2 cut(s) 537, 605
Fsp4HI GCNGC 5 cut(s) 278, 852, 917, 994, 1122
FspBI CTAG 5 cut(s) 113, 240, 269, 386, 908
GluI GCNGC 5 cut(s) 278, 852, 917, 994, 1122
GsuI CTGGAG 2 cut(s) 63, 819
HaeIII GGCC 3 cut(s) 217, 362, 993
HapII CCGG 3 cut(s) 674, 1013, 1171
Hin1II CATG 4 cut(s) 60, 130, 503, 899
HincII GTYRAC 2 cut(s) 610, 1162
HindII GTYRAC 2 cut(s) 610, 1162
HinfI GANTC 3 cut(s) 205, 606, 1076
HpaI GTTAAC 1 cut(s) 1162
HpaII CCGG 3 cut(s) 674, 1013, 1171
Hpy166II GTNNAC 4 cut(s) 230, 610, 932, 1162
Hpy188I TCNGA 2 cut(s) 697, 1103
Hpy188III TCNNGA 7 cut(s) 269, 367, 554, 659, 846, 880, 1013
Hpy8I GTNNAC 4 cut(s) 230, 610, 932, 1162
Hpy99I CGWCG 1 cut(s) 368
HpyAV CCTTC 4 cut(s) 207, 318, 647, 741
HpyCH4III ACNGT 7 cut(s) 166, 176, 329, 630, 739, 794, 1166
HpyCH4IV ACGT 1 cut(s) 456
HpyF10VI GCNNNNNNNGC 1 cut(s) 301
HpyF3I CTNAG 3 cut(s) 537, 972, 1035
HpySE526I ACGT 1 cut(s) 456
Hsp92II CATG 4 cut(s) 60, 130, 503, 899
Kpn2I TCCGGA 1 cut(s) 1012
KroI GCCGGC 1 cut(s) 1170
KroNI GCCGGC 1 cut(s) 1172
KspAI GTTAAC 1 cut(s) 1162
LmnI GCTCC 3 cut(s) 805, 838, 1114
Lsp1109I GCAGC 4 cut(s) 289, 838, 928, 1108
LweI GCATC 3 cut(s) 423, 712, 958
MaeI CTAG 5 cut(s) 113, 240, 269, 386, 908
MaeII ACGT 1 cut(s) 456
MaeIII GTNAC 2 cut(s) 452, 575
MboII GAAGA 5 cut(s) 330, 961, 1090, 1105, 1116
MflI RGATCY 2 cut(s) 382, 1095
MhlI GDGCHC 1 cut(s) 934
MluCI AATT 9 cut(s) 137, 190, 334, 473, 613, 711, 824, 954, 1028
MluI ACGCGT 1 cut(s) 721
MlyI GAGTC 1 cut(s) 615
MmeI TCCRAC 1 cut(s) 1121
Mph1103I ATGCAT 1 cut(s) 62
MroI TCCGGA 1 cut(s) 1012
MroNI GCCGGC 1 cut(s) 1170
MroXI GAANNNNTTC 1 cut(s) 1097
MseI TTAA 2 cut(s) 372, 1161
MslI CAYNNNNRTG 2 cut(s) 447, 500
MspI CCGG 3 cut(s) 674, 1013, 1171
MspR9I CCNGG 1 cut(s) 856
Mva1269I GAATGC 1 cut(s) 122
MvaI CCWGG 1 cut(s) 856
MvnI CGCG 1 cut(s) 723
MwoI GCNNNNNNNGC 1 cut(s) 301
NaeI GCCGGC 1 cut(s) 1172
NdeI CATATG 1 cut(s) 220
NgoMIV GCCGGC 1 cut(s) 1170
NlaIII CATG 4 cut(s) 60, 130, 503, 899
NlaIV GGNNCC 1 cut(s) 834
NsiI ATGCAT 1 cut(s) 62
NspV TTCGAA 1 cut(s) 646
PaeR7I CTCGAG 1 cut(s) 846
PcsI WCGNNNNNNNCGW 1 cut(s) 615
PctI GAATGC 1 cut(s) 122
PdiI GCCGGC 1 cut(s) 1172
PdmI GAANNNNTTC 1 cut(s) 1097
PfeI GAWTC 2 cut(s) 205, 1076
PflMI CCANNNNNTGG 1 cut(s) 47
PkrI GCNGC 5 cut(s) 279, 853, 918, 995, 1123
PleI GAGTC 1 cut(s) 614
PpsI GAGTC 1 cut(s) 614
PpuMI RGGWCCY 1 cut(s) 598
Psp1406I AACGTT 1 cut(s) 456
Psp5II RGGWCCY 1 cut(s) 598
Psp6I CCWGG 1 cut(s) 854
PspGI CCWGG 1 cut(s) 854
PspN4I GGNNCC 1 cut(s) 834
PspPI GGNCC 3 cut(s) 598, 1010, 1051
PspPPI RGGWCCY 1 cut(s) 598
PstI CTGCAG 1 cut(s) 511
PsuI RGATCY 2 cut(s) 382, 1095
RsaI GTAC 2 cut(s) 811, 977
RsaNI GTAC 2 cut(s) 810, 976
RseI CAYNNNNRTG 2 cut(s) 447, 500
SalI GTCGAC 1 cut(s) 608
SaqAI TTAA 2 cut(s) 372, 1161
SatI GCNGC 5 cut(s) 278, 852, 917, 994, 1122
Sau96I GGNCC 3 cut(s) 598, 1010, 1051
SchI GAGTC 1 cut(s) 615
ScrFI CCNGG 1 cut(s) 856
SduI GDGCHC 1 cut(s) 934
SfaNI GCATC 3 cut(s) 423, 712, 958
SfcI CTRYAG 1 cut(s) 507
Sfr274I CTCGAG 1 cut(s) 846
SfuI TTCGAA 1 cut(s) 646
SinI GGWCC 3 cut(s) 598, 1010, 1051
SlaI CTCGAG 1 cut(s) 846
SmiMI CAYNNNNRTG 2 cut(s) 447, 500
SmlI CTYRAG 1 cut(s) 846
SmoI CTYRAG 1 cut(s) 846
Sse9I AATT 9 cut(s) 137, 190, 334, 473, 613, 711, 824, 954, 1028
SsiI CCGC 2 cut(s) 181, 994
SspMI CTAG 5 cut(s) 113, 240, 269, 386, 908
StyD4I CCNGG 1 cut(s) 854
StyI CCWWGG 1 cut(s) 601
TaaI ACNGT 7 cut(s) 166, 176, 329, 630, 739, 794, 1166
TaiI ACGT 1 cut(s) 459
TaqI TCGA 7 cut(s) 161, 341, 609, 618, 646, 847, 943
TasI AATT 9 cut(s) 137, 190, 334, 473, 613, 711, 824, 954, 1028
TatI WGTACW 2 cut(s) 809, 975
TauI GCSGC 1 cut(s) 996
TfiI GAWTC 2 cut(s) 205, 1076
Tru1I TTAA 2 cut(s) 372, 1161
Tru9I TTAA 2 cut(s) 372, 1161
TscAI CASTG 2 cut(s) 334, 744
TseI GCWGC 4 cut(s) 277, 851, 916, 1121
TspDTI ATGAA 7 cut(s) 17, 115, 431, 488, 801, 962, 1106
TspRI CASTG 2 cut(s) 334, 744
Van91I CCANNNNNTGG 1 cut(s) 47
VneI GTGCAC 1 cut(s) 930
VpaK11BI GGWCC 3 cut(s) 598, 1010, 1051
XagI CCTNNNNNAGG 1 cut(s) 810
XapI RAATTY 3 cut(s) 137, 190, 334
XbaI TCTAGA 1 cut(s) 268
XhoI CTCGAG 1 cut(s) 846
XmiI GTMKAC 1 cut(s) 609
XmnI GAANNNNTTC 1 cut(s) 1097
XspI CTAG 5 cut(s) 113, 240, 269, 386, 908
Zsp2I ATGCAT 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.