RLG00000025955

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0012632
Physical Location & Seq
Forward (+)
49479636 .. 49482530
2895 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025955

Sequence Viewer

Length: 1197 bp
ATGAAGCCACCATCCAGTCCTATATCTTTGGGTGCAAAGCCAAGAAGTGGGAGATCATGCATTTGTAGGTTTTACCCTCCCGCTTCTTTGATGGTTGTAGTCCTGCTAGGGAGTGCATTCATGTTATCAAAATTCAACGAGCAATCATCATTTTCGACAGTCAAAAACAGTTTGCGGAGAATAAATTTCAAATGCAAGAATCACAGAAGGCCATATGGAAGTGAACCATTGCCTAGAGGTATCGTCTCCCAGACTTCTAATCTAGAAATGCAGCCATTGTGGAGAACGCCTAACACGCCACCTTCAAAGTTATACCAGAACAGTGCAAATTCCTCGATCAGCTTATTAGCGATGGCAGTCGGGATTAAGCAGAAAGAGCTAGTCGGTAAAATGATCAAAAAGTTTCTGTCAAGCGGTTTTGTTGTGATGCTTTTTCATTATGATGGTAATGTTGATGAGTGGAAGCAATTTCAATGGAATGATCTTGTCATTCATGTGTCTGCAGTCAATCAAACAAAATGGTGGTTCGCAAAGCGTTTCTTACATCCTGATATAGTTGCTCAATATAGTTACATTTTTCTATGGGATGAGGACCTTGGAGTTGACAATTTCAATCCTCAGCGGTATGTGTCCATTGTTCGAAAGGAAGGTCTTGAAATATCACAACCGGCACTTGATTTTTCCAAGTCAGAGGTACATCATCAAATTACCGCACGCGTGAAAGGATCAACAGTGCATAGAAGGACTTACAAGCCTAATGCCAATGGGACTGGTTGCGATGAACACAGTAAAGCTCCTCCTTGTACCGGGTGGATAGAAATGATGGCTCCAGTTTTCTCTCGAGCTGCCTGGCGTTGCGTATGGTATATGATCCAGAATAACTTGATCCATGCTTGGGGACTAGATATGCAGCTTGGCTATTGTGCACAGGAAAGCTCCTTAATCTATCTGCATGGTAATCGAATGAAGAAAATTGGTGTCGTAGATGCTGAGTACATAATCCATTATGGCCGCCCTACTTTGGGAGGTCCGGACGAAAATGAGAAATTACCTCAGTCTATTGCAAAGGACCATAGAGTTGATGTGAGGAGGGAATCCTACAACGAAATGAAGATCTTCAGAAGAAAATGGGAGCGAGCTGCGAAGAACGATGAGTGTTGGATTGATCCATACCCTGTTAACAATAGCCGGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

399

Amino Acids

45.8

Weight (kDa)

9.54

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 70 - 382 1.6e-138 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 47
AccII CGCG 1 cut(s) 717
AccIII TCCGGA 1 cut(s) 1030
AciI CCGC 6 cut(s) 81, 175, 414, 622, 711, 1012
AclWI GGATC 4 cut(s) 733, 865, 880, 1160
AcoI YGGCCR 1 cut(s) 1009
AcsI RAATTY 3 cut(s) 131, 184, 328
AcuI CTGAAG 1 cut(s) 1102
AfaI GTAC 3 cut(s) 696, 805, 995
AfiI CCNNNNNNNGG 5 cut(s) 47, 806, 895, 1021, 1022
AflIII ACRYGT 1 cut(s) 715
AgsI TTSAA 6 cut(s) 136, 190, 306, 473, 613, 656
AjnI CCWGG 1 cut(s) 848
AluBI AGCT 7 cut(s) 342, 379, 794, 845, 913, 936, 1139
AluI AGCT 7 cut(s) 342, 379, 794, 845, 913, 936, 1139
Alw21I GWGCWC 1 cut(s) 928
Alw26I GTCTC 1 cut(s) 250
Alw44I GTGCAC 1 cut(s) 924
AlwI GGATC 4 cut(s) 733, 865, 880, 1160
Ama87I CYCGRG 1 cut(s) 840
Aor13HI TCCGGA 1 cut(s) 1030
AoxI GGCC 2 cut(s) 209, 1009
ApaLI GTGCAC 1 cut(s) 924
ApeKI GCWGC 4 cut(s) 271, 845, 910, 1139
ApoI RAATTY 3 cut(s) 131, 184, 328
ArsI GACNNNNNNTTYG 2 cut(s) 634, 666
Asp700I GAANNNNTTC 1 cut(s) 1115
AspS9I GGNCC 3 cut(s) 592, 1028, 1069
AsuC2I CCSGG 1 cut(s) 808
AsuII TTCGAA 1 cut(s) 640
AvaI CYCGRG 1 cut(s) 840
AvaII GGWCC 3 cut(s) 592, 1028, 1069
BaeGI GKGCMC 1 cut(s) 928
Bbv12I GWGCWC 1 cut(s) 928
BbvCI CCTCAGC 1 cut(s) 618
BbvI GCAGC 4 cut(s) 283, 832, 922, 1126
BccI CCATC 5 cut(s) 19, 85, 346, 437, 817
BcgI CGANNNNNNTGC 4 cut(s) 315, 349, 941, 975
BciT130I CCWGG 1 cut(s) 850
BclI TGATCA 1 cut(s) 393
BcnI CCSGG 1 cut(s) 808
BcoDI GTCTC 1 cut(s) 250
BfaI CTAG 5 cut(s) 107, 234, 263, 380, 902
BfmI CTRYAG 1 cut(s) 501
BglII AGATCT 1 cut(s) 1113
BisI GCNGC 5 cut(s) 272, 846, 911, 1012, 1140
BlsI GCNGC 5 cut(s) 273, 847, 912, 1013, 1141
Bme1390I CCNGG 2 cut(s) 808, 850
Bme18I GGWCC 3 cut(s) 592, 1028, 1069
BmeT110I CYCGRG 1 cut(s) 840
BmgT120I GGNCC 3 cut(s) 592, 1028, 1069
BmiI GGNNCC 1 cut(s) 828
BmrFI CCNGG 2 cut(s) 808, 850
BmsI GCATC 2 cut(s) 417, 976
BpmI CTGGAG 1 cut(s) 813
Bpu10I CCTNAGC 1 cut(s) 618
Bpu14I TTCGAA 1 cut(s) 640
BpuMI CCSGG 1 cut(s) 808
BsaJI CCNNGG 1 cut(s) 595
BsaWI WCCGGW 1 cut(s) 1030
Bsc4I CCNNNNNNNGG 5 cut(s) 47, 806, 895, 1021, 1022
Bse118I RCCGGY 2 cut(s) 667, 1188
Bse1I ACTGG 3 cut(s) 15, 775, 830
Bse3DI GCAATG 1 cut(s) 227
BseAI TCCGGA 1 cut(s) 1030
BseBI CCWGG 1 cut(s) 850
BseDI CCNNGG 1 cut(s) 595
BseGI GGATG 3 cut(s) 11, 544, 592
BseLI CCNNNNNNNGG 5 cut(s) 47, 806, 895, 1021, 1022
BseMI GCAATG 1 cut(s) 227
BseMII CTCAG 3 cut(s) 632, 981, 1067
BseNI ACTGG 3 cut(s) 15, 775, 830
BseRI GAGGAG 2 cut(s) 786, 1102
BseSI GKGCMC 1 cut(s) 928
BseXI GCAGC 4 cut(s) 283, 832, 922, 1126
Bsh1236I CGCG 1 cut(s) 717
BshFI GGCC 2 cut(s) 211, 1011
BsiHKAI GWGCWC 1 cut(s) 928
BsiHKCI CYCGRG 1 cut(s) 840
BsiSI CCGG 4 cut(s) 668, 807, 1031, 1189
BslFI GGGAC 2 cut(s) 781, 912
BslI CCNNNNNNNGG 5 cut(s) 47, 806, 895, 1021, 1022
BsmAI GTCTC 1 cut(s) 250
BsmBI CGTCTC 1 cut(s) 250
BsmFI GGGAC 2 cut(s) 781, 912
BsmI GAATGC 1 cut(s) 116
BsnI GGCC 2 cut(s) 211, 1011
BsoBI CYCGRG 1 cut(s) 840
Bsp119I TTCGAA 1 cut(s) 640
Bsp1286I GDGCHC 1 cut(s) 928
Bsp13I TCCGGA 1 cut(s) 1030
Bsp143I GATC 9 cut(s) 53, 336, 393, 481, 725, 870, 885, 1113, 1165
BspACI CCGC 6 cut(s) 81, 175, 414, 622, 711, 1012
BspANI GGCC 2 cut(s) 211, 1011
BspCNI CTCAG 3 cut(s) 631, 982, 1066
BspEI TCCGGA 1 cut(s) 1030
BspFNI CGCG 1 cut(s) 717
BspLI GGNNCC 1 cut(s) 828
BspMAI CTGCAG 1 cut(s) 505
BspPI GGATC 4 cut(s) 733, 865, 880, 1160
BspT104I TTCGAA 1 cut(s) 640
BsrDI GCAATG 1 cut(s) 227
BsrFI RCCGGY 2 cut(s) 667, 1188
BsrI ACTGG 3 cut(s) 15, 775, 830
BssAI RCCGGY 2 cut(s) 667, 1188
BssECI CCNNGG 1 cut(s) 595
BssMI GATC 9 cut(s) 53, 336, 393, 481, 725, 870, 885, 1113, 1165
BssT1I CCWWGG 1 cut(s) 595
Bst2UI CCWGG 1 cut(s) 850
Bst4CI ACNGT 5 cut(s) 160, 170, 323, 733, 788
BstBI TTCGAA 1 cut(s) 640
BstC8I GCNNGC 3 cut(s) 715, 1137, 1190
BstDEI CTNAG 3 cut(s) 618, 990, 1053
BstF5I GGATG 3 cut(s) 11, 544, 592
BstFNI CGCG 1 cut(s) 717
BstKTI GATC 9 cut(s) 56, 339, 396, 484, 728, 873, 888, 1116, 1168
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 9 cut(s) 53, 336, 393, 481, 725, 870, 885, 1113, 1165
BstMWI GCNNNNNNNGC 2 cut(s) 295, 376
BstNI CCWGG 1 cut(s) 850
BstSCI CCNGG 2 cut(s) 806, 848
BstSFI CTRYAG 1 cut(s) 501
BstSLI GKGCMC 1 cut(s) 928
BstUI CGCG 1 cut(s) 717
BstV1I GCAGC 4 cut(s) 283, 832, 922, 1126
BstX2I RGATCY 1 cut(s) 1113
BstYI RGATCY 1 cut(s) 1113
BsuRI GGCC 2 cut(s) 211, 1011
BtgZI GCGATG 2 cut(s) 365, 792
BtsCI GGATG 3 cut(s) 11, 544, 592
BtsIMutI CAGTG 2 cut(s) 328, 738
Cac8I GCNNGC 3 cut(s) 715, 1137, 1190
Cfr10I RCCGGY 2 cut(s) 667, 1188
Cfr13I GGNCC 3 cut(s) 592, 1028, 1069
Csp6I GTAC 3 cut(s) 695, 804, 994
CviAII CATG 5 cut(s) 57, 121, 494, 890, 953
CviQI GTAC 3 cut(s) 695, 804, 994
DdeI CTNAG 3 cut(s) 618, 990, 1053
DpnI GATC 9 cut(s) 55, 338, 395, 483, 727, 872, 887, 1115, 1167
DpnII GATC 9 cut(s) 53, 336, 393, 481, 725, 870, 885, 1113, 1165
EaeI YGGCCR 1 cut(s) 1009
Eco130I CCWWGG 1 cut(s) 595
Eco47I GGWCC 3 cut(s) 592, 1028, 1069
Eco57I CTGAAG 1 cut(s) 1102
Eco88I CYCGRG 1 cut(s) 840
EcoO109I RGGNCCY 1 cut(s) 592
EcoRII CCWGG 1 cut(s) 848
EcoT14I CCWWGG 1 cut(s) 595
EcoT22I ATGCAT 1 cut(s) 62
ErhI CCWWGG 1 cut(s) 595
Esp3I CGTCTC 1 cut(s) 250
FaeI CATG 5 cut(s) 60, 124, 497, 893, 956
FalI AAGNNNNNCTT 2 cut(s) 524, 556
FaqI GGGAC 2 cut(s) 781, 912
FatI CATG 5 cut(s) 56, 120, 493, 889, 952
FauI CCCGC 1 cut(s) 88
FauNDI CATATG 1 cut(s) 214
FbaI TGATCA 1 cut(s) 393
Fnu4HI GCNGC 5 cut(s) 272, 846, 911, 1012, 1140
FokI GGATG 2 cut(s) 531, 599
Fsp4HI GCNGC 5 cut(s) 272, 846, 911, 1012, 1140
FspBI CTAG 5 cut(s) 107, 234, 263, 380, 902
GluI GCNGC 5 cut(s) 272, 846, 911, 1012, 1140
GsuI CTGGAG 1 cut(s) 813
HaeIII GGCC 2 cut(s) 211, 1011
HapII CCGG 4 cut(s) 668, 807, 1031, 1189
Hin1II CATG 5 cut(s) 60, 124, 497, 893, 956
HincII GTYRAC 2 cut(s) 604, 1180
HindII GTYRAC 2 cut(s) 604, 1180
HinfI GANTC 2 cut(s) 199, 1094
HpaI GTTAAC 1 cut(s) 1180
HpaII CCGG 4 cut(s) 668, 807, 1031, 1189
Hpy166II GTNNAC 4 cut(s) 224, 604, 926, 1180
Hpy188I TCNGA 2 cut(s) 691, 1121
Hpy188III TCNNGA 7 cut(s) 263, 361, 548, 653, 840, 874, 1031
Hpy8I GTNNAC 4 cut(s) 224, 604, 926, 1180
HpyAV CCTTC 4 cut(s) 201, 312, 641, 735
HpyCH4III ACNGT 5 cut(s) 160, 170, 323, 733, 788
HpyF10VI GCNNNNNNNGC 2 cut(s) 295, 376
HpyF3I CTNAG 3 cut(s) 618, 990, 1053
Hsp92II CATG 5 cut(s) 60, 124, 497, 893, 956
Kpn2I TCCGGA 1 cut(s) 1030
KroI GCCGGC 1 cut(s) 1188
KroNI GCCGGC 1 cut(s) 1190
Ksp22I TGATCA 1 cut(s) 393
KspAI GTTAAC 1 cut(s) 1180
Kzo9I GATC 9 cut(s) 53, 336, 393, 481, 725, 870, 885, 1113, 1165
LmnI GCTCC 4 cut(s) 799, 832, 941, 1132
Lsp1109I GCAGC 4 cut(s) 283, 832, 922, 1126
LweI GCATC 2 cut(s) 417, 976
MaeI CTAG 5 cut(s) 107, 234, 263, 380, 902
MaeIII GTNAC 1 cut(s) 569
MalI GATC 9 cut(s) 55, 338, 395, 483, 727, 872, 887, 1115, 1167
MboI GATC 9 cut(s) 53, 336, 393, 481, 725, 870, 885, 1113, 1165
MboII GAAGA 5 cut(s) 979, 1108, 1123, 1134, 1156
MflI RGATCY 1 cut(s) 1113
MhlI GDGCHC 1 cut(s) 928
MluCI AATT 8 cut(s) 131, 184, 328, 467, 607, 705, 972, 1046
MluI ACGCGT 1 cut(s) 715
MmeI TCCRAC 1 cut(s) 1139
Mph1103I ATGCAT 1 cut(s) 62
MroI TCCGGA 1 cut(s) 1030
MroNI GCCGGC 1 cut(s) 1188
MroXI GAANNNNTTC 1 cut(s) 1115
MseI TTAA 3 cut(s) 366, 941, 1179
MslI CAYNNNNRTG 2 cut(s) 441, 494
MspA1I CMGCKG 1 cut(s) 622
MspI CCGG 4 cut(s) 668, 807, 1031, 1189
MspR9I CCNGG 2 cut(s) 808, 850
Mva1269I GAATGC 1 cut(s) 116
MvaI CCWGG 1 cut(s) 850
MvnI CGCG 1 cut(s) 717
MwoI GCNNNNNNNGC 2 cut(s) 295, 376
NaeI GCCGGC 1 cut(s) 1190
NciI CCSGG 1 cut(s) 808
NdeI CATATG 1 cut(s) 214
NdeII GATC 9 cut(s) 53, 336, 393, 481, 725, 870, 885, 1113, 1165
NgoMIV GCCGGC 1 cut(s) 1188
NlaIII CATG 5 cut(s) 60, 124, 497, 893, 956
NlaIV GGNNCC 1 cut(s) 828
NsiI ATGCAT 1 cut(s) 62
NspV TTCGAA 1 cut(s) 640
PaeR7I CTCGAG 1 cut(s) 840
PctI GAATGC 1 cut(s) 116
PdiI GCCGGC 1 cut(s) 1190
PdmI GAANNNNTTC 1 cut(s) 1115
PfeI GAWTC 2 cut(s) 199, 1094
PflMI CCANNNNNTGG 1 cut(s) 47
PkrI GCNGC 5 cut(s) 273, 847, 912, 1013, 1141
PpuMI RGGWCCY 1 cut(s) 592
Psp5II RGGWCCY 1 cut(s) 592
Psp6I CCWGG 1 cut(s) 848
PspGI CCWGG 1 cut(s) 848
PspN4I GGNNCC 1 cut(s) 828
PspPI GGNCC 3 cut(s) 592, 1028, 1069
PspPPI RGGWCCY 1 cut(s) 592
PstI CTGCAG 1 cut(s) 505
PsuI RGATCY 1 cut(s) 1113
RsaI GTAC 3 cut(s) 696, 805, 995
RsaNI GTAC 3 cut(s) 695, 804, 994
RseI CAYNNNNRTG 2 cut(s) 441, 494
SaqAI TTAA 3 cut(s) 366, 941, 1179
SatI GCNGC 5 cut(s) 272, 846, 911, 1012, 1140
Sau3AI GATC 9 cut(s) 53, 336, 393, 481, 725, 870, 885, 1113, 1165
Sau96I GGNCC 3 cut(s) 592, 1028, 1069
ScrFI CCNGG 2 cut(s) 808, 850
SduI GDGCHC 1 cut(s) 928
SfaNI GCATC 2 cut(s) 417, 976
SfcI CTRYAG 1 cut(s) 501
Sfr274I CTCGAG 1 cut(s) 840
SfuI TTCGAA 1 cut(s) 640
SinI GGWCC 3 cut(s) 592, 1028, 1069
SlaI CTCGAG 1 cut(s) 840
SmiMI CAYNNNNRTG 2 cut(s) 441, 494
SmlI CTYRAG 1 cut(s) 840
SmoI CTYRAG 1 cut(s) 840
Sse9I AATT 8 cut(s) 131, 184, 328, 467, 607, 705, 972, 1046
SsiI CCGC 6 cut(s) 81, 175, 414, 622, 711, 1012
SspMI CTAG 5 cut(s) 107, 234, 263, 380, 902
StyD4I CCNGG 2 cut(s) 806, 848
StyI CCWWGG 1 cut(s) 595
TaaI ACNGT 5 cut(s) 160, 170, 323, 733, 788
TaqI TCGA 5 cut(s) 155, 335, 640, 841, 961
TasI AATT 8 cut(s) 131, 184, 328, 467, 607, 705, 972, 1046
TatI WGTACW 1 cut(s) 993
TauI GCSGC 1 cut(s) 1014
TfiI GAWTC 2 cut(s) 199, 1094
Tru1I TTAA 3 cut(s) 366, 941, 1179
Tru9I TTAA 3 cut(s) 366, 941, 1179
TscAI CASTG 2 cut(s) 328, 738
TseI GCWGC 4 cut(s) 271, 845, 910, 1139
TspDTI ATGAA 7 cut(s) 17, 109, 425, 482, 795, 980, 1124
TspRI CASTG 2 cut(s) 328, 738
Van91I CCANNNNNTGG 1 cut(s) 47
VneI GTGCAC 1 cut(s) 924
VpaK11BI GGWCC 3 cut(s) 592, 1028, 1069
XapI RAATTY 3 cut(s) 131, 184, 328
XbaI TCTAGA 1 cut(s) 262
XhoI CTCGAG 1 cut(s) 840
XmnI GAANNNNTTC 1 cut(s) 1115
XspI CTAG 5 cut(s) 107, 234, 263, 380, 902
Zsp2I ATGCAT 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.