FvH4_6g00630

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012632
Physical Location & Seq
Reverse (-)
362264 .. 365721
3458 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00630.t1

Sequence Viewer

Length: 1176 bp
ATGAAGTCACCTTTTGATCCTATATCTTTGGGTGCAGGGCCAACAAGTGGGAGATCATACTGCATTAGGCTTCTCCCTTCAGCTTCTTTGATATTCATAGTTCTTCTGCTGGGTAGTGCATTCATATTATCAGAATTCAATGAGAAATCATCGTTTGGGAGAGTCAGAAATAGTTTGCGGAGTTTCAATTACAAATGCAAGTATCACAGAAGGCCATATGGAAGTGAAACATTGCCTAGAGGTATCGTCTCCCAGACCTCTAATCTGGAAATGCGGCCATTATGGACAGCATCTAACAAGCCACCTTCAAGGTTAAACCAGAGAAGTGTAAATTCCTCGGTCAGCTTATTAGCGATGGCCGTTGGGATCAAGCAGAAGGATCTAGCCAGTAAAATGGTCAAAAAGTTTCTGTCAAGTGGTTTTGTTGTCATGCTTTTTCATTATGATGGCAACGTTGATGAGTGGAAGCAATTTCAATGGAATGATCTTGTTATTCATGTTTCGGCAGTCGATCAAACAAAATGGTGGTTTGCAAAGCGTTTCTTACATCCTGATATAGTTGCTGAATATAGTTATGTTTTTCTATGGGATGAAGATCTTGGAGTAGACAGTTTTAATCCTCAACGGTATGTGTCCATTATTCGGAAGGAAGGGCTTGAAATATCTCAACCGGCACTTGATTTTTCCAAGTCAGTGGTGAATCATCAAATTACTGCACGTGTGAAAGGATCAATAGTGCACAGAAGGACTTACAAGCCTAATGCCAATGGGACTGGTTGCGATGAAAACAGTACAGCTCCTCCTTGTACCGGGTGGATAGAAGTGATGGCTCCAGTTTTCTCTCGAGCTGCCTGGCGTTGCGTATGGTATATGATCCAGAATAATTTGATCCATGCTTGGGGACTAGATATGCAGCTTGGCTATTGTGCACAGGGTGATCGAAAGAAGAATATTGGTGTCGTAGATGCGGAGTACCTAATCCATTATGGCCGCCCTACTTTGGGAGGTCCAAACGATAATGAGAAATCACCTCAAGCTAGTGCAAAGGACCACAGAGTTGATGTGAGGAGGGAATCCTACAACGAAATGAAGATTTTCAATCGAAAATGGGAAAAAGCTGCAAAGAACGATGAGTGTTGGATTGATCCATACCCTGTTAGCAGTAGCCATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

392

Amino Acids

44.58

Weight (kDa)

9.34

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 71 - 375 4.3e-140 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 47
AccI GTMKAC 1 cut(s) 606
AciI CCGC 4 cut(s) 178, 274, 968, 991
AclI AACGTT 1 cut(s) 453
AclWI GGATC 7 cut(s) 11, 374, 387, 736, 868, 883, 1139
AcoI YGGCCR 3 cut(s) 275, 357, 988
AcsI RAATTY 2 cut(s) 134, 331
AcuI CTGAAG 1 cut(s) 63
AcvI CACGTG 1 cut(s) 719
AdeI CACNNNGTG 1 cut(s) 935
AfaI GTAC 3 cut(s) 793, 808, 974
AfiI CCNNNNNNNGG 6 cut(s) 47, 642, 809, 898, 1000, 1001
AflIII ACRYGT 1 cut(s) 718
AgsI TTSAA 6 cut(s) 139, 187, 309, 476, 659, 1099
AjnI CCWGG 1 cut(s) 851
AluBI AGCT 7 cut(s) 83, 345, 797, 848, 916, 1037, 1118
AluI AGCT 7 cut(s) 83, 345, 797, 848, 916, 1037, 1118
Alw21I GWGCWC 2 cut(s) 741, 931
Alw26I GTCTC 1 cut(s) 253
Alw44I GTGCAC 2 cut(s) 737, 927
AlwI GGATC 7 cut(s) 11, 374, 387, 736, 868, 883, 1139
Ama87I CYCGRG 1 cut(s) 843
AoxI GGCC 5 cut(s) 38, 212, 275, 357, 988
ApaLI GTGCAC 2 cut(s) 737, 927
ApeKI GCWGC 3 cut(s) 848, 913, 1118
ApoI RAATTY 2 cut(s) 134, 331
Asp700I GAANNNNTTC 1 cut(s) 1094
AspS9I GGNCC 3 cut(s) 38, 1007, 1048
AsuC2I CCSGG 1 cut(s) 811
AsuHPI GGTGA 3 cut(s) 709, 947, 1020
AvaI CYCGRG 1 cut(s) 843
AvaII GGWCC 2 cut(s) 1007, 1048
BaeGI GKGCMC 2 cut(s) 741, 931
BbrPI CACGTG 1 cut(s) 719
Bbv12I GWGCWC 2 cut(s) 741, 931
BbvI GCAGC 3 cut(s) 835, 925, 1105
BccI CCATC 3 cut(s) 349, 440, 820
BceAI ACGGC 1 cut(s) 344
BciT130I CCWGG 1 cut(s) 853
BcnI CCSGG 1 cut(s) 811
BcoDI GTCTC 1 cut(s) 253
BfaI CTAG 4 cut(s) 237, 383, 905, 1038
BglII AGATCT 1 cut(s) 595
BisI GCNGC 5 cut(s) 275, 849, 914, 991, 1119
BlsI GCNGC 5 cut(s) 276, 850, 915, 992, 1120
Bme1390I CCNGG 2 cut(s) 811, 853
Bme18I GGWCC 2 cut(s) 1007, 1048
BmeT110I CYCGRG 1 cut(s) 843
BmgT120I GGNCC 3 cut(s) 38, 1007, 1048
BmiI GGNNCC 1 cut(s) 831
BmrFI CCNGG 2 cut(s) 811, 853
BmsI GCATC 2 cut(s) 299, 955
BpmI CTGGAG 1 cut(s) 816
BpuEI CTTGAG 1 cut(s) 1017
BpuMI CCSGG 1 cut(s) 811
BsaAI YACGTR 1 cut(s) 719
BsaBI GATNNNNATC 1 cut(s) 594
BsaJI CCNNGG 1 cut(s) 336
BsaXI ACNNNNNCTCC 2 cut(s) 784, 814
Bsc4I CCNNNNNNNGG 6 cut(s) 47, 642, 809, 898, 1000, 1001
Bse118I RCCGGY 1 cut(s) 670
Bse1I ACTGG 3 cut(s) 387, 778, 833
Bse3DI GCAATG 1 cut(s) 230
Bse8I GATNNNNATC 1 cut(s) 594
BseBI CCWGG 1 cut(s) 853
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 2 cut(s) 547, 595
BseJI GATNNNNATC 1 cut(s) 594
BseLI CCNNNNNNNGG 6 cut(s) 47, 642, 809, 898, 1000, 1001
BseMI GCAATG 1 cut(s) 230
BseNI ACTGG 3 cut(s) 387, 778, 833
BseRI GAGGAG 2 cut(s) 789, 1081
BseSI GKGCMC 2 cut(s) 741, 931
BseXI GCAGC 3 cut(s) 835, 925, 1105
BseYI CCCAGC 1 cut(s) 109
BsgI GTGCAG 2 cut(s) 54, 699
BshFI GGCC 5 cut(s) 40, 214, 277, 359, 990
BsiHKAI GWGCWC 2 cut(s) 741, 931
BsiHKCI CYCGRG 1 cut(s) 843
BsiSI CCGG 2 cut(s) 671, 810
BslFI GGGAC 2 cut(s) 784, 915
BslI CCNNNNNNNGG 6 cut(s) 47, 642, 809, 898, 1000, 1001
BsmAI GTCTC 1 cut(s) 253
BsmBI CGTCTC 1 cut(s) 253
BsmFI GGGAC 2 cut(s) 784, 915
BsmI GAATGC 1 cut(s) 119
BsnI GGCC 5 cut(s) 40, 214, 277, 359, 990
BsoBI CYCGRG 1 cut(s) 843
Bsp1286I GDGCHC 2 cut(s) 741, 931
BspACI CCGC 4 cut(s) 178, 274, 968, 991
BspANI GGCC 5 cut(s) 40, 214, 277, 359, 990
BspLI GGNNCC 1 cut(s) 831
BspPI GGATC 7 cut(s) 11, 374, 387, 736, 868, 883, 1139
BsrDI GCAATG 1 cut(s) 230
BsrFI RCCGGY 1 cut(s) 670
BsrI ACTGG 3 cut(s) 387, 778, 833
BssAI RCCGGY 1 cut(s) 670
BssECI CCNNGG 1 cut(s) 336
Bst2UI CCWGG 1 cut(s) 853
Bst4CI ACNGT 3 cut(s) 611, 627, 791
BstBAI YACGTR 1 cut(s) 719
BstF5I GGATG 2 cut(s) 547, 595
BstMAI GTCTC 1 cut(s) 253
BstNI CCWGG 1 cut(s) 853
BstSCI CCNGG 2 cut(s) 809, 851
BstSLI GKGCMC 2 cut(s) 741, 931
BstV1I GCAGC 3 cut(s) 835, 925, 1105
BstX2I RGATCY 2 cut(s) 379, 595
BstXI CCANNNNNNTGG 2 cut(s) 394, 694
BstYI RGATCY 2 cut(s) 379, 595
BsuRI GGCC 5 cut(s) 40, 214, 277, 359, 990
BtgZI GCGATG 2 cut(s) 368, 795
BtsCI GGATG 2 cut(s) 547, 595
BtsIMutI CAGTG 1 cut(s) 699
Cfr10I RCCGGY 1 cut(s) 670
Cfr13I GGNCC 3 cut(s) 38, 1007, 1048
Csp6I GTAC 3 cut(s) 792, 807, 973
CviAII CATG 3 cut(s) 430, 497, 893
CviQI GTAC 3 cut(s) 792, 807, 973
DraIII CACNNNGTG 1 cut(s) 935
EaeI YGGCCR 3 cut(s) 275, 357, 988
Eco47I GGWCC 2 cut(s) 1007, 1048
Eco57I CTGAAG 1 cut(s) 63
Eco72I CACGTG 1 cut(s) 719
Eco88I CYCGRG 1 cut(s) 843
EcoRI GAATTC 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 851
Esp3I CGTCTC 1 cut(s) 253
FaeI CATG 3 cut(s) 433, 500, 896
FalI AAGNNNNNCTT 2 cut(s) 527, 559
FaqI GGGAC 2 cut(s) 784, 915
FatI CATG 3 cut(s) 429, 496, 892
FauNDI CATATG 1 cut(s) 217
FblI GTMKAC 1 cut(s) 606
Fnu4HI GCNGC 5 cut(s) 275, 849, 914, 991, 1119
FokI GGATG 2 cut(s) 534, 602
Fsp4HI GCNGC 5 cut(s) 275, 849, 914, 991, 1119
FspBI CTAG 4 cut(s) 237, 383, 905, 1038
GluI GCNGC 5 cut(s) 275, 849, 914, 991, 1119
GsaI CCCAGC 1 cut(s) 113
GsuI CTGGAG 1 cut(s) 816
HaeIII GGCC 5 cut(s) 40, 214, 277, 359, 990
HapII CCGG 2 cut(s) 671, 810
Hin1II CATG 3 cut(s) 433, 500, 896
HinfI GANTC 3 cut(s) 162, 700, 1073
HpaII CCGG 2 cut(s) 671, 810
HphI GGTGA 3 cut(s) 709, 947, 1020
Hpy166II GTNNAC 3 cut(s) 607, 739, 929
Hpy188I TCNGA 3 cut(s) 133, 167, 645
Hpy188III TCNNGA 4 cut(s) 266, 551, 843, 877
Hpy8I GTNNAC 3 cut(s) 607, 739, 929
HpyAV CCTTC 7 cut(s) 87, 204, 315, 370, 640, 644, 738
HpyCH4III ACNGT 3 cut(s) 611, 627, 791
HpyCH4IV ACGT 2 cut(s) 453, 718
HpySE526I ACGT 2 cut(s) 453, 718
Hsp92II CATG 3 cut(s) 433, 500, 896
LmnI GCTCC 2 cut(s) 802, 835
Lsp1109I GCAGC 3 cut(s) 835, 925, 1105
LweI GCATC 2 cut(s) 299, 955
MaeI CTAG 4 cut(s) 237, 383, 905, 1038
MaeII ACGT 2 cut(s) 453, 718
MaeIII GTNAC 1 cut(s) 6
MboII GAAGA 4 cut(s) 95, 605, 958, 1102
MflI RGATCY 2 cut(s) 379, 595
MhlI GDGCHC 2 cut(s) 741, 931
MluCI AATT 6 cut(s) 134, 187, 331, 470, 708, 883
MlyI GAGTC 1 cut(s) 171
MmeI TCCRAC 1 cut(s) 1118
MnlI CCTC 9 cut(s) 233, 268, 346, 630, 810, 998, 1041, 1059, 1062
MroXI GAANNNNTTC 1 cut(s) 1094
MseI TTAA 2 cut(s) 314, 615
MslI CAYNNNNRTG 1 cut(s) 444
MspI CCGG 2 cut(s) 671, 810
MspR9I CCNGG 2 cut(s) 811, 853
Mva1269I GAATGC 1 cut(s) 119
MvaI CCWGG 1 cut(s) 853
NciI CCSGG 1 cut(s) 811
NdeI CATATG 1 cut(s) 217
NlaIII CATG 3 cut(s) 433, 500, 896
NlaIV GGNNCC 1 cut(s) 831
NmuCI GTSAC 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 843
PctI GAATGC 1 cut(s) 119
PdmI GAANNNNTTC 1 cut(s) 1094
PfeI GAWTC 2 cut(s) 700, 1073
PflMI CCANNNNNTGG 1 cut(s) 47
PkrI GCNGC 5 cut(s) 276, 850, 915, 992, 1120
PleI GAGTC 1 cut(s) 170
PmaCI CACGTG 1 cut(s) 719
PmlI CACGTG 1 cut(s) 719
PpsI GAGTC 1 cut(s) 170
Ppu21I YACGTR 1 cut(s) 719
Psp1406I AACGTT 1 cut(s) 453
Psp6I CCWGG 1 cut(s) 851
PspCI CACGTG 1 cut(s) 719
PspFI CCCAGC 1 cut(s) 109
PspGI CCWGG 1 cut(s) 851
PspN4I GGNNCC 1 cut(s) 831
PspPI GGNCC 3 cut(s) 38, 1007, 1048
PsuI RGATCY 2 cut(s) 379, 595
RsaI GTAC 3 cut(s) 793, 808, 974
RsaNI GTAC 3 cut(s) 792, 807, 973
RseI CAYNNNNRTG 1 cut(s) 444
SaqAI TTAA 2 cut(s) 314, 615
SatI GCNGC 5 cut(s) 275, 849, 914, 991, 1119
Sau96I GGNCC 3 cut(s) 38, 1007, 1048
SchI GAGTC 1 cut(s) 171
ScrFI CCNGG 2 cut(s) 811, 853
SduI GDGCHC 2 cut(s) 741, 931
SfaNI GCATC 2 cut(s) 299, 955
Sfr274I CTCGAG 1 cut(s) 843
SinI GGWCC 2 cut(s) 1007, 1048
SlaI CTCGAG 1 cut(s) 843
SmiMI CAYNNNNRTG 1 cut(s) 444
SmlI CTYRAG 2 cut(s) 843, 1032
SmoI CTYRAG 2 cut(s) 843, 1032
Sse9I AATT 6 cut(s) 134, 187, 331, 470, 708, 883
SsiI CCGC 4 cut(s) 178, 274, 968, 991
SspI AATATT 1 cut(s) 952
SspMI CTAG 4 cut(s) 237, 383, 905, 1038
StyD4I CCNGG 2 cut(s) 809, 851
TaaI ACNGT 3 cut(s) 611, 627, 791
TaiI ACGT 2 cut(s) 456, 721
TaqI TCGA 4 cut(s) 510, 844, 940, 1102
TaqII GACCGA 1 cut(s) 328
TasI AATT 6 cut(s) 134, 187, 331, 470, 708, 883
TatI WGTACW 1 cut(s) 791
TauI GCSGC 2 cut(s) 277, 993
TfiI GAWTC 2 cut(s) 700, 1073
Tru1I TTAA 2 cut(s) 314, 615
Tru9I TTAA 2 cut(s) 314, 615
TscAI CASTG 1 cut(s) 699
TseFI GTSAC 1 cut(s) 6
TseI GCWGC 3 cut(s) 848, 913, 1118
Tsp45I GTSAC 1 cut(s) 6
TspDTI ATGAA 8 cut(s) 17, 85, 112, 428, 485, 606, 798, 1103
TspRI CASTG 1 cut(s) 699
Van91I CCANNNNNTGG 1 cut(s) 47
VneI GTGCAC 2 cut(s) 737, 927
VpaK11BI GGWCC 2 cut(s) 1007, 1048
XapI RAATTY 2 cut(s) 134, 331
XhoI CTCGAG 1 cut(s) 843
XmiI GTMKAC 1 cut(s) 606
XmnI GAANNNNTTC 1 cut(s) 1094
XspI CTAG 4 cut(s) 237, 383, 905, 1038
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.