Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0012632

Physical Location & Seq

Genomic Coordinates Forward (+)

22626782 .. 22629787

Gene Structure 3006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g21480.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGAAGTCCTCCTCTGTTACTTTTCGTGCAGATTCGAGAAGCGGAAAATCGTGTTTTTGTAGTATTTTCCCGGCAGCTTCTCTGCTGTGTATATTATTTGTCATAGTGACTGCATACATATCATCATCAGATTACAAAGAGGATTCATCGTCATTTTGGAAAGTCACAAACAATTTGCAAACTCTAAAATACAAATGCAAGAATCAAGATAAGCCTTACGGAAGTGAGCCACTTCCTCGAGGTATTGTTGCCAAGACTTCTAATCTGGAAATGCAGCCGTTGTGGCATGCTAAAAAGAAACCTTCGTTTAAATTGTTGGAGAAGAAAGATGCAAATTCTTCATCTAGTTTGTTTGCCATGGCCGTTGGGATAAAGCAAAAAGATCTTGTTAGTAAAATGGTCAAAAAGTTTCTGTCAAGTGGTTTCGTTGTGATGCTCTTCCATTATGATGGCATCGTCGATCAGTGGAAGGAATTTCAATGGAGTGACCAAGTCATTCATATATCTGCAGTCAATCAAACTAAATGGTGGTTTGCGAAGCGCTTCTTGCATCCTGACATAGTTGCCGAATATAGTTACATTTTCCTCTGGGATGAGGACCTCGGAGTTGACAATTTCCACCCCCAACGGTACGTATCCATTGTTCAAAAGGAAGGGCTTGAGATATCACAACCTGCACTGGATTATTCCAAATCAGAGGTGCATCATCAAATTACTGTGCGTTTGAGAGGATCGGTAGCACACAGAAGGACTTACAAGTCAAGTAACAATGGGAAAGGTTGTCATGACAGCAGTACAGCTCCTCCTTGCACTGGTTGGATAGAAGTGATGGCTCCTGTTTTCTCTCGAGCTGCCTGGCGCTGCGTATGGTATATGATCCAGAATGACTTGATTCATGCTTGGGGACTAGATATGCAGATTGGCTATTGCGCACAGGGGGATCGAACTAAAAAAGTTGGGGTTGTGGATGCCGAGTACATAATCCATTACGGCCGCCCTACACTGGGAGGATCCTCAGATGATCAAAGTGATCAGGTGACGAAGGATAAAATTCGTTGGCAGGAATCGTCACCATCATCAAAATCCACAAGAAAGGGCCACAGAGCTGATGTGAGGCGGGAATCGTACAACGAAATGAAAGTGTTCAGAAGGAAATGGGAACGAGCCATCAAGAATGATAAATGTTGGATCGATCCCTACAGGCAGCCAGTAATTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF707

Protein Analysis

407

Amino Acids

46.63

Weight (kDa)

9.35

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00590 FvH4_6g00630
malus_domestica	MD04G1243900.v1.1 MD12G1259600.v1.1
prunus_persica	Prupe.6G360400_v2.0.a1 Prupe.6G360400_v2.0.a1 Prupe.6G360400_v2.0.a1
pyrus_communis	pycom04g21480
rosa_chinensis	RchiOBHm_Chr3g0447981
rosa_laevigata	RLG00000025955
rosa_multiflora	Rmu_sc0005969.1_g000010
rosa_roxburghii	Rroxscaffold_6G00426170
rosa_rugosa	Rorug02G0607600
rosa_samantha	Rh3AG006800 Rh3BG006500 Rh3CG006700 Rh3DG007100
rosa_wichuraiana	Rw0G020020 Rw3G000550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	757
AbsI	CCTCGAGG	1 cut(s)	237
Acc16I	TGCGCA	1 cut(s)	931
Acc36I	ACCTGC	1 cut(s)	682
AccB7I	CCANNNNNTGG	1 cut(s)	1214
AciI	CCGC	3 cut(s)	42, 994, 1117
AclWI	GGATC	7 cut(s)	739, 871, 948, 1005, 1018, 1187, 1196
AcoI	YGGCCR	2 cut(s)	360, 991
AcsI	RAATTY	3 cut(s)	334, 473, 1050
AfaI	GTAC	4 cut(s)	632, 796, 977, 1127
AfeI	AGCGCT	1 cut(s)	542
AfiI	CCNNNNNNNGG	4 cut(s)	812, 1003, 1004, 1214
AgsI	TTSAA	2 cut(s)	479, 647
AjnI	CCWGG	1 cut(s)	854
AluBI	AGCT	4 cut(s)	77, 800, 851, 1106
AluI	AGCT	4 cut(s)	77, 800, 851, 1106
AlwI	GGATC	7 cut(s)	739, 871, 948, 1005, 1018, 1187, 1196
Ama87I	CYCGRG	2 cut(s)	237, 846
Aor51HI	AGCGCT	1 cut(s)	542
AoxI	GGCC	3 cut(s)	360, 991, 1096
ApeKI	GCWGC	5 cut(s)	74, 274, 851, 861, 1204
ApoI	RAATTY	3 cut(s)	334, 473, 1050
Asp700I	GAANNNNTTC	2 cut(s)	542, 1142
AspLEI	GCGC	3 cut(s)	543, 861, 932
AspS9I	GGNCC	2 cut(s)	598, 1096
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	2 cut(s)	1048, 1062
AvaI	CYCGRG	2 cut(s)	237, 846
AvaII	GGWCC	1 cut(s)	598
BamHI	GGATCC	1 cut(s)	1010
BbvI	GCAGC	5 cut(s)	86, 286, 838, 848, 1216
BccI	CCATC	4 cut(s)	443, 823, 1081, 1175
BceAI	ACGGC	3 cut(s)	262, 347, 1006
BciT130I	CCWGG	1 cut(s)	856
BciVI	GTATCC	1 cut(s)	646
BclI	TGATCA	2 cut(s)	1021, 1030
BcnI	CCSGG	1 cut(s)	71
BfaI	CTAG	2 cut(s)	345, 908
BfmI	CTRYAG	2 cut(s)	507, 1198
BfoI	RGCGCY	2 cut(s)	544, 862
BfuAI	ACCTGC	1 cut(s)	682
BfuI	GTATCC	1 cut(s)	646
BglI	GCCNNNNNGGC	1 cut(s)	283
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	6 cut(s)	75, 275, 852, 862, 994, 1205
BlsI	GCNGC	6 cut(s)	76, 276, 853, 863, 995, 1206
Bme1390I	CCNGG	2 cut(s)	71, 856
Bme18I	GGWCC	1 cut(s)	598
BmeT110I	CYCGRG	2 cut(s)	237, 846
BmgT120I	GGNCC	2 cut(s)	598, 1096
BmiI	GGNNCC	2 cut(s)	834, 1012
BmrFI	CCNGG	2 cut(s)	71, 856
BmrI	ACTGGG	1 cut(s)	1013
BmsI	GCATC	6 cut(s)	319, 423, 462, 559, 712, 958
BmuI	ACTGGG	1 cut(s)	1013
BpuEI	CTTGAG	1 cut(s)	680
BpuMI	CCSGG	1 cut(s)	71
Bsa29I	ATCGAT	1 cut(s)	1191
BsaAI	YACGTR	1 cut(s)	634
BsaJI	CCNNGG	2 cut(s)	357, 601
BsaXI	ACNNNNNCTCC	2 cut(s)	787, 817
Bsc4I	CCNNNNNNNGG	4 cut(s)	812, 1003, 1004, 1214
Bse1I	ACTGG	4 cut(s)	684, 817, 1008, 1208
BseBI	CCWGG	1 cut(s)	856
BseCI	ATCGAT	1 cut(s)	1191
BseDI	CCNNGG	2 cut(s)	357, 601
BseGI	GGATG	3 cut(s)	550, 598, 973
BseLI	CCNNNNNNNGG	4 cut(s)	812, 1003, 1004, 1214
BseMII	CTCAG	1 cut(s)	1029
BseNI	ACTGG	4 cut(s)	684, 817, 1008, 1208
BseRI	GAGGAG	1 cut(s)	792
BseX3I	CGGCCG	1 cut(s)	991
BseXI	GCAGC	5 cut(s)	86, 286, 838, 848, 1216
BsgI	GTGCAG	2 cut(s)	48, 660
Bsh1285I	CGRYCG	1 cut(s)	994
BshFI	GGCC	3 cut(s)	362, 993, 1098
BshVI	ATCGAT	1 cut(s)	1191
BsiEI	CGRYCG	1 cut(s)	994
BsiHKCI	CYCGRG	2 cut(s)	237, 846
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	918
BslI	CCNNNNNNNGG	4 cut(s)	812, 1003, 1004, 1214
BsmFI	GGGAC	1 cut(s)	918
BsnI	GGCC	3 cut(s)	362, 993, 1098
BsoBI	CYCGRG	2 cut(s)	237, 846
Bsp19I	CCATGG	1 cut(s)	357
BspACI	CCGC	3 cut(s)	42, 994, 1117
BspANI	GGCC	3 cut(s)	362, 993, 1098
BspCNI	CTCAG	1 cut(s)	1028
BspDI	ATCGAT	1 cut(s)	1191
BspHI	TCATGA	1 cut(s)	784
BspLI	GGNNCC	2 cut(s)	834, 1012
BspMAI	CTGCAG	1 cut(s)	511
BspMI	ACCTGC	1 cut(s)	682
BspPI	GGATC	7 cut(s)	739, 871, 948, 1005, 1018, 1187, 1196
BspQI	GCTCTTC	1 cut(s)	443
BsrI	ACTGG	4 cut(s)	684, 817, 1008, 1208
BssECI	CCNNGG	2 cut(s)	357, 601
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	856
Bst4CI	ACNGT	2 cut(s)	630, 718
Bst6I	CTCTTC	1 cut(s)	443
BstBAI	YACGTR	1 cut(s)	634
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	1 cut(s)	1015
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	3 cut(s)	550, 598, 973
BstH2I	RGCGCY	2 cut(s)	544, 862
BstHHI	GCGC	3 cut(s)	543, 861, 932
BstMCI	CGRYCG	1 cut(s)	994
BstMWI	GCNNNNNNNGC	2 cut(s)	283, 547
BstNI	CCWGG	1 cut(s)	856
BstNSI	RCATGY	1 cut(s)	290
BstSCI	CCNGG	2 cut(s)	69, 854
BstSFI	CTRYAG	2 cut(s)	507, 1198
BstSNI	TACGTA	1 cut(s)	634
BstV1I	GCAGC	5 cut(s)	86, 286, 838, 848, 1216
BstX2I	RGATCY	2 cut(s)	382, 1010
BstXI	CCANNNNNNTGG	1 cut(s)	449
BstYI	RGATCY	2 cut(s)	382, 1010
BstZI	CGGCCG	1 cut(s)	991
Bsu15I	ATCGAT	1 cut(s)	1191
BsuI	GTATCC	1 cut(s)	646
BsuRI	GGCC	3 cut(s)	362, 993, 1098
BsuTUI	ATCGAT	1 cut(s)	1191
BtgI	CCRYGG	1 cut(s)	357
BtsCI	GGATG	3 cut(s)	550, 598, 973
BtsIMutI	CAGTG	4 cut(s)	470, 677, 810, 1001
BveI	ACCTGC	1 cut(s)	682
Cac8I	GCNNGC	1 cut(s)	288
CciI	TCATGA	1 cut(s)	784
CfoI	GCGC	3 cut(s)	543, 861, 932
Cfr13I	GGNCC	2 cut(s)	598, 1096
ClaI	ATCGAT	1 cut(s)	1191
Csp6I	GTAC	4 cut(s)	631, 795, 976, 1126
CviAII	CATG	4 cut(s)	287, 358, 785, 896
CviQI	GTAC	4 cut(s)	631, 795, 976, 1126
DdeI	CTNAG	1 cut(s)	1015
DraI	TTTAAA	1 cut(s)	310
DrdI	GACNNNNNNGTC	1 cut(s)	757
DseDI	GACNNNNNNGTC	1 cut(s)	757
EaeI	YGGCCR	2 cut(s)	360, 991
EagI	CGGCCG	1 cut(s)	991
Eam1104I	CTCTTC	1 cut(s)	443
EarI	CTCTTC	1 cut(s)	443
EclXI	CGGCCG	1 cut(s)	991
Eco105I	TACGTA	1 cut(s)	634
Eco130I	CCWWGG	1 cut(s)	357
Eco32I	GATATC	1 cut(s)	666
Eco47I	GGWCC	1 cut(s)	598
Eco47III	AGCGCT	1 cut(s)	542
Eco52I	CGGCCG	1 cut(s)	991
Eco88I	CYCGRG	2 cut(s)	237, 846
EcoO109I	RGGNCCY	1 cut(s)	598
EcoRII	CCWGG	1 cut(s)	854
EcoRV	GATATC	1 cut(s)	666
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	4 cut(s)	290, 361, 788, 899
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FaqI	GGGAC	1 cut(s)	918
FatI	CATG	4 cut(s)	286, 357, 784, 895
FauI	CCCGC	1 cut(s)	1110
FbaI	TGATCA	2 cut(s)	1021, 1030
Fnu4HI	GCNGC	6 cut(s)	75, 275, 852, 862, 994, 1205
FokI	GGATG	3 cut(s)	537, 605, 980
Fsp4HI	GCNGC	6 cut(s)	75, 275, 852, 862, 994, 1205
FspBI	CTAG	2 cut(s)	345, 908
FspI	TGCGCA	1 cut(s)	931
GlaI	GCGC	3 cut(s)	542, 860, 931
GluI	GCNGC	6 cut(s)	75, 275, 852, 862, 994, 1205
HaeII	RGCGCY	2 cut(s)	544, 862
HaeIII	GGCC	3 cut(s)	362, 993, 1098
HapII	CCGG	1 cut(s)	71
HhaI	GCGC	3 cut(s)	543, 861, 932
Hin1II	CATG	4 cut(s)	290, 361, 788, 899
Hin6I	GCGC	3 cut(s)	541, 859, 930
HinP1I	GCGC	3 cut(s)	541, 859, 930
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HinfI	GANTC	6 cut(s)	32, 143, 202, 892, 1064, 1121
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	2 cut(s)	1048, 1062
Hpy166II	GTNNAC	1 cut(s)	610
Hpy188I	TCNGA	5 cut(s)	130, 605, 697, 1018, 1148
Hpy188III	TCNNGA	8 cut(s)	36, 206, 266, 554, 785, 846, 880, 1171
Hpy8I	GTNNAC	1 cut(s)	610
Hpy99I	CGWCG	1 cut(s)	461
HpyAV	CCTTC	6 cut(s)	312, 463, 647, 741, 1036, 1143
HpyCH4III	ACNGT	2 cut(s)	630, 718
HpyCH4IV	ACGT	1 cut(s)	633
HpyF10VI	GCNNNNNNNGC	2 cut(s)	283, 547
HpyF3I	CTNAG	1 cut(s)	1015
HpySE526I	ACGT	1 cut(s)	633
Hsp92II	CATG	4 cut(s)	290, 361, 788, 899
HspAI	GCGC	3 cut(s)	541, 859, 930
Ksp22I	TGATCA	2 cut(s)	1021, 1030
LguI	GCTCTTC	1 cut(s)	443
LmnI	GCTCC	2 cut(s)	805, 838
Lsp1109I	GCAGC	5 cut(s)	86, 286, 838, 848, 1216
LweI	GCATC	6 cut(s)	319, 423, 462, 559, 712, 958
MaeI	CTAG	2 cut(s)	345, 908
MaeII	ACGT	1 cut(s)	633
MaeIII	GTNAC	8 cut(s)	16, 106, 163, 485, 575, 764, 1036, 1068
MboII	GAAGA	3 cut(s)	330, 334, 430
MflI	RGATCY	2 cut(s)	382, 1010
MluCI	AATT	8 cut(s)	172, 311, 334, 473, 613, 711, 1050, 1212
MmeI	TCCRAC	3 cut(s)	297, 797, 1166
MroXI	GAANNNNTTC	2 cut(s)	542, 1142
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	1 cut(s)	447
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	2 cut(s)	71, 856
MvaI	CCWGG	1 cut(s)	856
MwoI	GCNNNNNNNGC	2 cut(s)	283, 547
NciI	CCSGG	1 cut(s)	71
NcoI	CCATGG	1 cut(s)	357
NlaIII	CATG	4 cut(s)	290, 361, 788, 899
NlaIV	GGNNCC	2 cut(s)	834, 1012
NmeAIII	GCCGAG	1 cut(s)	997
NmuCI	GTSAC	5 cut(s)	106, 163, 485, 1036, 1068
NsbI	TGCGCA	1 cut(s)	931
NspI	RCATGY	1 cut(s)	290
PaeI	GCATGC	1 cut(s)	290
PaeR7I	CTCGAG	2 cut(s)	237, 846
PagI	TCATGA	1 cut(s)	784
PciSI	GCTCTTC	1 cut(s)	443
PdmI	GAANNNNTTC	2 cut(s)	542, 1142
PfeI	GAWTC	6 cut(s)	32, 143, 202, 892, 1064, 1121
PflFI	GACNNNGTC	1 cut(s)	491
PflMI	CCANNNNNTGG	1 cut(s)	1214
PkrI	GCNGC	6 cut(s)	76, 276, 853, 863, 995, 1206
Ppu21I	YACGTR	1 cut(s)	634
PpuMI	RGGWCCY	1 cut(s)	598
Psp5II	RGGWCCY	1 cut(s)	598
Psp6I	CCWGG	1 cut(s)	854
PspGI	CCWGG	1 cut(s)	854
PspN4I	GGNNCC	2 cut(s)	834, 1012
PspPI	GGNCC	2 cut(s)	598, 1096
PspPPI	RGGWCCY	1 cut(s)	598
PspXI	VCTCGAGB	1 cut(s)	237
PsrI	GAACNNNNNNTAC	2 cut(s)	627, 659
PstI	CTGCAG	1 cut(s)	511
PsuI	RGATCY	2 cut(s)	382, 1010
PsyI	GACNNNGTC	1 cut(s)	491
RsaI	GTAC	4 cut(s)	632, 796, 977, 1127
RsaNI	GTAC	4 cut(s)	631, 795, 976, 1126
RseI	CAYNNNNRTG	1 cut(s)	447
SapI	GCTCTTC	1 cut(s)	443
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	6 cut(s)	75, 275, 852, 862, 994, 1205
Sau96I	GGNCC	2 cut(s)	598, 1096
ScrFI	CCNGG	2 cut(s)	71, 856
SfaNI	GCATC	6 cut(s)	319, 423, 462, 559, 712, 958
SfcI	CTRYAG	2 cut(s)	507, 1198
Sfr274I	CTCGAG	2 cut(s)	237, 846
SinI	GGWCC	1 cut(s)	598
SlaI	CTCGAG	2 cut(s)	237, 846
SmiMI	CAYNNNNRTG	1 cut(s)	447
SmlI	CTYRAG	3 cut(s)	237, 659, 846
SmoI	CTYRAG	3 cut(s)	237, 659, 846
SnaBI	TACGTA	1 cut(s)	634
SphI	GCATGC	1 cut(s)	290
Sse9I	AATT	8 cut(s)	172, 311, 334, 473, 613, 711, 1050, 1212
SsiI	CCGC	3 cut(s)	42, 994, 1117
SspMI	CTAG	2 cut(s)	345, 908
StyD4I	CCNGG	2 cut(s)	69, 854
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	630, 718
TaiI	ACGT	1 cut(s)	636
TaqI	TCGA	6 cut(s)	35, 238, 459, 847, 943, 1191
TasI	AATT	8 cut(s)	172, 311, 334, 473, 613, 711, 1050, 1212
TatI	WGTACW	2 cut(s)	794, 975
TauI	GCSGC	1 cut(s)	996
TfiI	GAWTC	6 cut(s)	32, 143, 202, 892, 1064, 1121
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	4 cut(s)	470, 684, 817, 1008
TseFI	GTSAC	5 cut(s)	106, 163, 485, 1036, 1068
TseI	GCWGC	5 cut(s)	74, 274, 851, 861, 1204
Tsp45I	GTSAC	5 cut(s)	106, 163, 485, 1036, 1068
TspDTI	ATGAA	6 cut(s)	17, 135, 330, 488, 884, 1151
TspGWI	ACGGA	1 cut(s)	234
TspRI	CASTG	4 cut(s)	470, 684, 817, 1008
Tth111I	GACNNNGTC	1 cut(s)	491
Van91I	CCANNNNNTGG	1 cut(s)	1214
VpaK11BI	GGWCC	1 cut(s)	598
XapI	RAATTY	3 cut(s)	334, 473, 1050
XceI	RCATGY	1 cut(s)	290
XhoI	CTCGAG	2 cut(s)	237, 846
XmnI	GAANNNNTTC	2 cut(s)	542, 1142
XspI	CTAG	2 cut(s)	345, 908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.