Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0012632

Physical Location & Seq

Genomic Coordinates Forward (+)

30419341 .. 30423917

Gene Structure 4577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G360400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGAAGTCCTCCCCCAATTCTGTGACTTTACGTGCGGATCCAAGAAGCGGGAAATCACGCCTTTGTAACGTTCTCCCGGCAGCTTCTCTGCTATGTCTACTGTTTCTCATACTCACCTTATCATCAGAGTACAAAGAAGAGAAATCATCACTTTGGAGAGTCACAAACAGCTTGCAGAATCTAAAGAACAAATGCAAGAATCAATACAGGCCTTATGGAAGTGAGGCATTGCCTCAAGATATTGTCTCCAAGACTTCTAATTTGGAAATGCGGCCCTTATGGAATGAAAAAAAGAAACGCTCAAAATCTTCAGTTAACTTGTTGGAGAAGAAAGGTGCAAATTCAACTAATTTATTTGCGATGGCTGTTGGTATAAAGCAAAAAGATCTTGTCAGTAAAATGGTCAAAAAGTTTCTGTCAAGTGGTTTTGTTGTGATGCTTTTCCATTATGATGGTATCGTTGATGAGTGGAAGGAATTTCAATGGAGTGATCTTGTTATTCATGTATCTGCAATCAATCAAACTAAATGGTGGTTTGCCAAGCGTTTCTTACATCCTGATATAGTTGCTGAGTATAGTTACATTTTTCTCTGGGATGAGGACCTTGGAGTTGAAAATTTCCACCCCAAACGGTATGTATCCATTGTTCAAAAGGAAGGCCTTGAGATATCACAACCAGCACTAGATTATTCCAAGTCAGAGGTGCATCATCAAATTACTGCACGTTTGAGAGGATCGATAGCACACAGAAGGACTTACAAGGCTAGTAACAATGGGAACGGTTGTCATGAAAGCAGTACAGCTCCCCCTTGCACCGGGTGGATAGAAGTGATGGCTCCTGTTTTCTCTAGAGCTGCCTGGCGCTGTGTATGGCATATGATCCAGAATGACTTGATTCATGCATGGGGCCTGGATATGCAGCTTGGCTATTGTGCACAGGGCGATCGAACTAAAAATGTTGGTGTTGTGGATGCCGAGTACATAATCCATTATGGTCTCCCTACATTGGGAGGCTCAGATGAAAATGAGGAACCATCATCAAAATCTAGTGGAAAGGACCATAGAGTTGATGTGAGGAGAGAATCCTACAACGAAATGAAGGTGTTCAAAAGGAAATGGGAACGAGCTGTCAAGGATGATAAATGTTGGATTGATCCATACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF707

Protein Analysis

389

Amino Acids

44.56

Weight (kDa)

9.16

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00590 FvH4_6g00630
malus_domestica	MD04G1243900.v1.1 MD12G1259600.v1.1
prunus_persica	Prupe.6G360400_v2.0.a1 Prupe.6G360400_v2.0.a1 Prupe.6G360400_v2.0.a1
pyrus_communis	pycom04g21480
rosa_chinensis	RchiOBHm_Chr3g0447981
rosa_laevigata	RLG00000025955
rosa_multiflora	Rmu_sc0005969.1_g000010
rosa_roxburghii	Rroxscaffold_6G00426170
rosa_rugosa	Rorug02G0607600
rosa_samantha	Rh3AG006800 Rh3BG006500 Rh3CG006700 Rh3DG007100
rosa_wichuraiana	Rw0G020020 Rw3G000550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	97
AciI	CCGC	3 cut(s)	35, 48, 271
AclI	AACGTT	1 cut(s)	69
AclWI	GGATC	5 cut(s)	32, 45, 742, 874, 1148
AcsI	RAATTY	3 cut(s)	340, 476, 616
AcuI	CTGAAG	1 cut(s)	294
AdeI	CACNNNGTG	1 cut(s)	819
AfaI	GTAC	3 cut(s)	131, 799, 980
AfiI	CCNNNNNNNGG	4 cut(s)	47, 815, 1006, 1007
AgsI	TTSAA	5 cut(s)	345, 482, 614, 650, 1108
AjnI	CCWGG	2 cut(s)	857, 909
AluBI	AGCT	6 cut(s)	83, 171, 803, 854, 922, 1127
AluI	AGCT	6 cut(s)	83, 171, 803, 854, 922, 1127
Alw21I	GWGCWC	1 cut(s)	937
Alw26I	GTCTC	2 cut(s)	250, 1001
Alw44I	GTGCAC	1 cut(s)	933
AlwI	GGATC	5 cut(s)	32, 45, 742, 874, 1148
AoxI	GGCC	4 cut(s)	209, 272, 658, 907
ApaLI	GTGCAC	1 cut(s)	933
ApeKI	GCWGC	3 cut(s)	80, 854, 919
ApoI	RAATTY	3 cut(s)	340, 476, 616
ArsI	GACNNNNNNTTYG	2 cut(s)	244, 276
Asp700I	GAANNNNTTC	1 cut(s)	1103
AspLEI	GCGC	1 cut(s)	864
AspS9I	GGNCC	4 cut(s)	273, 601, 907, 1057
AsuC2I	CCSGG	2 cut(s)	77, 817
AsuHPI	GGTGA	1 cut(s)	106
AvaII	GGWCC	2 cut(s)	601, 1057
BaeGI	GKGCMC	1 cut(s)	937
BamHI	GGATCC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	937
BbvI	GCAGC	3 cut(s)	92, 841, 931
BccI	CCATC	4 cut(s)	355, 446, 826, 1042
BciT130I	CCWGG	2 cut(s)	859, 911
BciVI	GTATCC	1 cut(s)	649
BcnI	CCSGG	2 cut(s)	77, 817
BcoDI	GTCTC	2 cut(s)	250, 1001
BfaI	CTAG	4 cut(s)	683, 765, 849, 1047
BfoI	RGCGCY	1 cut(s)	865
BfuI	GTATCC	1 cut(s)	649
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	4 cut(s)	81, 272, 855, 920
BlsI	GCNGC	4 cut(s)	82, 273, 856, 921
Bme1390I	CCNGG	4 cut(s)	77, 817, 859, 911
Bme18I	GGWCC	2 cut(s)	601, 1057
BmgT120I	GGNCC	4 cut(s)	273, 601, 907, 1057
BmiI	GGNNCC	4 cut(s)	39, 837, 908, 1032
BmrFI	CCNGG	4 cut(s)	77, 817, 859, 911
BmsI	GCATC	3 cut(s)	426, 715, 961
BpuEI	CTTGAG	2 cut(s)	219, 683
BpuMI	CCSGG	2 cut(s)	77, 817
Bsa29I	ATCGAT	1 cut(s)	737
BsaAI	YACGTR	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	1001
BsaJI	CCNNGG	1 cut(s)	604
Bsc4I	CCNNNNNNNGG	4 cut(s)	47, 815, 1006, 1007
Bse3DI	GCAATG	1 cut(s)	227
BseBI	CCWGG	2 cut(s)	859, 911
BseCI	ATCGAT	1 cut(s)	737
BseDI	CCNNGG	1 cut(s)	604
BseGI	GGATG	4 cut(s)	553, 601, 976, 1141
BseLI	CCNNNNNNNGG	4 cut(s)	47, 815, 1006, 1007
BseMI	GCAATG	1 cut(s)	227
BseMII	CTCAG	2 cut(s)	561, 1029
BseRI	GAGGAG	1 cut(s)	1090
BseSI	GKGCMC	1 cut(s)	937
BseXI	GCAGC	3 cut(s)	92, 841, 931
BsgI	GTGCAG	1 cut(s)	705
Bsh1285I	CGRYCG	1 cut(s)	946
BshFI	GGCC	4 cut(s)	211, 274, 660, 909
BshVI	ATCGAT	1 cut(s)	737
BsiEI	CGRYCG	1 cut(s)	946
BsiHKAI	GWGCWC	1 cut(s)	937
BsiSI	CCGG	2 cut(s)	77, 816
BslI	CCNNNNNNNGG	4 cut(s)	47, 815, 1006, 1007
BsmAI	GTCTC	2 cut(s)	250, 1001
BsnI	GGCC	4 cut(s)	211, 274, 660, 909
Bso31I	GGTCTC	1 cut(s)	1001
Bsp1286I	GDGCHC	1 cut(s)	937
Bsp143I	GATC	7 cut(s)	37, 385, 490, 734, 879, 943, 1153
BspACI	CCGC	3 cut(s)	35, 48, 271
BspANI	GGCC	4 cut(s)	211, 274, 660, 909
BspCNI	CTCAG	2 cut(s)	562, 1028
BspDI	ATCGAT	1 cut(s)	737
BspHI	TCATGA	1 cut(s)	787
BspLI	GGNNCC	4 cut(s)	39, 837, 908, 1032
BspPI	GGATC	5 cut(s)	32, 45, 742, 874, 1148
BspTNI	GGTCTC	1 cut(s)	1001
BsrDI	GCAATG	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	604
BssMI	GATC	7 cut(s)	37, 385, 490, 734, 879, 943, 1153
BssT1I	CCWWGG	1 cut(s)	604
Bst2UI	CCWGG	2 cut(s)	859, 911
Bst4CI	ACNGT	3 cut(s)	102, 633, 782
Bst6I	CTCTTC	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	173
BstDEI	CTNAG	2 cut(s)	570, 1015
BstF5I	GGATG	4 cut(s)	553, 601, 976, 1141
BstH2I	RGCGCY	1 cut(s)	865
BstHHI	GCGC	1 cut(s)	864
BstKTI	GATC	7 cut(s)	40, 388, 493, 737, 882, 946, 1156
BstMAI	GTCTC	2 cut(s)	250, 1001
BstMBI	GATC	7 cut(s)	37, 385, 490, 734, 879, 943, 1153
BstMCI	CGRYCG	1 cut(s)	946
BstNI	CCWGG	2 cut(s)	859, 911
BstSCI	CCNGG	4 cut(s)	75, 815, 857, 909
BstSLI	GKGCMC	1 cut(s)	937
BstV1I	GCAGC	3 cut(s)	92, 841, 931
BstX2I	RGATCY	2 cut(s)	37, 385
BstXI	CCANNNNNNTGG	1 cut(s)	452
BstYI	RGATCY	2 cut(s)	37, 385
Bsu15I	ATCGAT	1 cut(s)	737
BsuI	GTATCC	1 cut(s)	649
BsuRI	GGCC	4 cut(s)	211, 274, 660, 909
BsuTUI	ATCGAT	1 cut(s)	737
BtgZI	GCGATG	1 cut(s)	374
BtsCI	GGATG	4 cut(s)	553, 601, 976, 1141
Cac8I	GCNNGC	1 cut(s)	173
CciI	TCATGA	1 cut(s)	787
CfoI	GCGC	1 cut(s)	864
Cfr13I	GGNCC	4 cut(s)	273, 601, 907, 1057
ClaI	ATCGAT	1 cut(s)	737
Csp6I	GTAC	3 cut(s)	130, 798, 979
CviAII	CATG	4 cut(s)	503, 788, 899, 903
CviQI	GTAC	3 cut(s)	130, 798, 979
DdeI	CTNAG	2 cut(s)	570, 1015
DpnI	GATC	7 cut(s)	39, 387, 492, 736, 881, 945, 1155
DpnII	GATC	7 cut(s)	37, 385, 490, 734, 879, 943, 1153
DraIII	CACNNNGTG	1 cut(s)	819
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	604
Eco147I	AGGCCT	2 cut(s)	211, 660
Eco31I	GGTCTC	1 cut(s)	1001
Eco32I	GATATC	1 cut(s)	669
Eco47I	GGWCC	2 cut(s)	601, 1057
Eco57I	CTGAAG	1 cut(s)	294
EcoO109I	RGGNCCY	2 cut(s)	601, 907
EcoRII	CCWGG	2 cut(s)	857, 909
EcoRV	GATATC	1 cut(s)	669
EcoT14I	CCWWGG	1 cut(s)	604
EcoT22I	ATGCAT	1 cut(s)	904
ErhI	CCWWGG	1 cut(s)	604
FaeI	CATG	4 cut(s)	506, 791, 902, 906
FalI	AAGNNNNNCTT	2 cut(s)	533, 565
FatI	CATG	4 cut(s)	502, 787, 898, 902
FauI	CCCGC	1 cut(s)	41
FauNDI	CATATG	1 cut(s)	876
FblI	GTMKAC	1 cut(s)	97
Fnu4HI	GCNGC	4 cut(s)	81, 272, 855, 920
FokI	GGATG	4 cut(s)	540, 608, 983, 1148
Fsp4HI	GCNGC	4 cut(s)	81, 272, 855, 920
FspBI	CTAG	4 cut(s)	683, 765, 849, 1047
GlaI	GCGC	1 cut(s)	863
GluI	GCNGC	4 cut(s)	81, 272, 855, 920
HaeII	RGCGCY	1 cut(s)	865
HaeIII	GGCC	4 cut(s)	211, 274, 660, 909
HapII	CCGG	2 cut(s)	77, 816
HhaI	GCGC	1 cut(s)	864
Hin1II	CATG	4 cut(s)	506, 791, 902, 906
Hin6I	GCGC	1 cut(s)	862
HinP1I	GCGC	1 cut(s)	862
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	5 cut(s)	159, 178, 199, 895, 1082
HpaI	GTTAAC	1 cut(s)	316
HpaII	CCGG	2 cut(s)	77, 816
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	3 cut(s)	98, 316, 935
Hpy188I	TCNGA	3 cut(s)	127, 700, 1018
Hpy188III	TCNNGA	5 cut(s)	236, 557, 788, 849, 883
Hpy8I	GTNNAC	3 cut(s)	98, 316, 935
HpyAV	CCTTC	4 cut(s)	466, 650, 744, 1093
HpyCH4III	ACNGT	3 cut(s)	102, 633, 782
HpyCH4IV	ACGT	3 cut(s)	31, 69, 724
HpyF3I	CTNAG	2 cut(s)	570, 1015
HpySE526I	ACGT	3 cut(s)	31, 69, 724
Hsp92II	CATG	4 cut(s)	506, 791, 902, 906
HspAI	GCGC	1 cut(s)	862
KspAI	GTTAAC	1 cut(s)	316
Kzo9I	GATC	7 cut(s)	37, 385, 490, 734, 879, 943, 1153
LmnI	GCTCC	2 cut(s)	808, 841
Lsp1109I	GCAGC	3 cut(s)	92, 841, 931
LweI	GCATC	3 cut(s)	426, 715, 961
MaeI	CTAG	4 cut(s)	683, 765, 849, 1047
MaeII	ACGT	3 cut(s)	31, 69, 724
MaeIII	GTNAC	5 cut(s)	22, 65, 160, 578, 767
MalI	GATC	7 cut(s)	39, 387, 492, 736, 881, 945, 1155
MboI	GATC	7 cut(s)	37, 385, 490, 734, 879, 943, 1153
MboII	GAAGA	3 cut(s)	149, 300, 340
MflI	RGATCY	2 cut(s)	37, 385
MhlI	GDGCHC	1 cut(s)	937
MluCI	AATT	7 cut(s)	16, 259, 340, 349, 476, 616, 714
MlyI	GAGTC	1 cut(s)	168
MmeI	TCCRAC	2 cut(s)	303, 1127
MnlI	CCTC	9 cut(s)	19, 217, 243, 592, 694, 725, 1004, 1021, 1068
Mph1103I	ATGCAT	1 cut(s)	904
MroXI	GAANNNNTTC	1 cut(s)	1103
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	450
MspI	CCGG	2 cut(s)	77, 816
MspR9I	CCNGG	4 cut(s)	77, 817, 859, 911
MvaI	CCWGG	2 cut(s)	859, 911
NciI	CCSGG	2 cut(s)	77, 817
NdeI	CATATG	1 cut(s)	876
NdeII	GATC	7 cut(s)	37, 385, 490, 734, 879, 943, 1153
NlaIII	CATG	4 cut(s)	506, 791, 902, 906
NlaIV	GGNNCC	4 cut(s)	39, 837, 908, 1032
NmeAIII	GCCGAG	1 cut(s)	1000
NmuCI	GTSAC	2 cut(s)	22, 160
NsiI	ATGCAT	1 cut(s)	904
PagI	TCATGA	1 cut(s)	787
PceI	AGGCCT	2 cut(s)	211, 660
PdmI	GAANNNNTTC	1 cut(s)	1103
PfeI	GAWTC	4 cut(s)	178, 199, 895, 1082
PkrI	GCNGC	4 cut(s)	82, 273, 856, 921
Ple19I	CGATCG	1 cut(s)	946
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
Ppu21I	YACGTR	1 cut(s)	32
PpuMI	RGGWCCY	1 cut(s)	601
Psp1406I	AACGTT	1 cut(s)	69
Psp5II	RGGWCCY	1 cut(s)	601
Psp6I	CCWGG	2 cut(s)	857, 909
PspGI	CCWGG	2 cut(s)	857, 909
PspN4I	GGNNCC	4 cut(s)	39, 837, 908, 1032
PspPI	GGNCC	4 cut(s)	273, 601, 907, 1057
PspPPI	RGGWCCY	1 cut(s)	601
PsrI	GAACNNNNNNTAC	2 cut(s)	630, 662
PsuI	RGATCY	2 cut(s)	37, 385
PvuI	CGATCG	1 cut(s)	946
RsaI	GTAC	3 cut(s)	131, 799, 980
RsaNI	GTAC	3 cut(s)	130, 798, 979
RseI	CAYNNNNRTG	1 cut(s)	450
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	4 cut(s)	81, 272, 855, 920
Sau3AI	GATC	7 cut(s)	37, 385, 490, 734, 879, 943, 1153
Sau96I	GGNCC	4 cut(s)	273, 601, 907, 1057
SchI	GAGTC	1 cut(s)	168
ScrFI	CCNGG	4 cut(s)	77, 817, 859, 911
SduI	GDGCHC	1 cut(s)	937
SfaNI	GCATC	3 cut(s)	426, 715, 961
SinI	GGWCC	2 cut(s)	601, 1057
SmiMI	CAYNNNNRTG	1 cut(s)	450
SmlI	CTYRAG	2 cut(s)	234, 662
SmoI	CTYRAG	2 cut(s)	234, 662
Sse9I	AATT	7 cut(s)	16, 259, 340, 349, 476, 616, 714
SseBI	AGGCCT	2 cut(s)	211, 660
SsiI	CCGC	3 cut(s)	35, 48, 271
SspMI	CTAG	4 cut(s)	683, 765, 849, 1047
StuI	AGGCCT	2 cut(s)	211, 660
StyD4I	CCNGG	4 cut(s)	75, 815, 857, 909
StyI	CCWWGG	1 cut(s)	604
TaaI	ACNGT	3 cut(s)	102, 633, 782
TaiI	ACGT	3 cut(s)	34, 72, 727
TaqI	TCGA	2 cut(s)	737, 946
TasI	AATT	7 cut(s)	16, 259, 340, 349, 476, 616, 714
TatI	WGTACW	3 cut(s)	129, 797, 978
TauI	GCSGC	1 cut(s)	274
TfiI	GAWTC	4 cut(s)	178, 199, 895, 1082
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TseFI	GTSAC	2 cut(s)	22, 160
TseI	GCWGC	3 cut(s)	80, 854, 919
Tsp45I	GTSAC	2 cut(s)	22, 160
TspDTI	ATGAA	7 cut(s)	17, 300, 491, 804, 887, 1035, 1112
VneI	GTGCAC	1 cut(s)	933
VpaK11BI	GGWCC	2 cut(s)	601, 1057
XapI	RAATTY	3 cut(s)	340, 476, 616
XbaI	TCTAGA	1 cut(s)	848
XmiI	GTMKAC	1 cut(s)	97
XmnI	GAANNNNTTC	1 cut(s)	1103
XspI	CTAG	4 cut(s)	683, 765, 849, 1047
Zsp2I	ATGCAT	1 cut(s)	904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.