Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001721

Physical Location & Seq

Genomic Coordinates Reverse (-)

453872 .. 458378

Gene Structure 4507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g00770.t11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGTCTCTATTTCGGAAGAAAAGGAGTGAAATCGGATGTCCCTCGTTCTTGTGGTTCCTTGCGTACTTATCTGTCCAGATTCCTTGCTTTTTCCTGTGGTTGACTACCATTCGCAGAATGTCACTGGATAATCACCCCGGCTTTGATTGCGGTGGCACTCTGTGGTTCCAGAACTTGTCTGAATTACCTCATGGTGTTTCAGGTCCTATCTTTCCTCTCCTGATTGCTGGTTTGCACTATGTTAATGTTCAGATTTCTTTCAAGACATCTTCTGTCAGGACAATGAAGGGTGTGTTTGGCACATTAGCTCAATACTACAAGTATTATTTGGATTTCATGACATTACCTTTGTTTTTTATTGGCTACAATATTCCTCAGGGTAGTCTAGTCTATTGGGTTACAAATAGCTCATTAAGTGTCATTCAGCAATTAGCTCTGAAGGATCCTGCTGTACGTGCAAAGTTGGGGTTGCCAGACAATGTCGAGCCTACAAAAATTGAGAATTCTGAGAAGTCGGATACTCCTGAAATATCACCCTTAGCTTCTCCTACTAAAATGAAAAAAATATCGTTACAGAACCTGTCACCCAAAGATCTTGTCAATCTTTCAGTTCAAGTCTTATCAGAAGGAGATAGAGAAAGAGCACTTCCTTTACTAAGACTTGCTCTTGAGAAAGATCCTGAGTATGTACGAGCATTGATAGTAATGGGTCAGACTCTATTGCAGAAAAAATTGGAGGCAGAGGCTACTGAGTACTTGGAACGCGCTATAACCAAGCTCTTTAGTACTGGTGTTCCCACACAAGTGGAGGATATTGATAACCTAATTCTTGCATCTCAGTGGACTGGTGTTGCCTACATACGGCAGGGAAAATTCCCTGAAGGGATTGGACACCTGGAAAGAATTGCACAATTGAACGAGCCAGATGAACGAAAGGTGAAGGCTCATTATTTTGATGGGTTGTTAATGCTGGCAAGTGCTCTATCCAATGTGGGTCGCAAGGATGAAGCTCTGAAGCATCTGCGCTTAGCTGCTGCTTATAATCCTGCTTACAATGAATTCCTGGAACAGTGTGAAAATGAGGATGACAGTATAGTCAGTGATCTTACCAGCAGTAGACGATCCGATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

60KD_IMP TPR_16 TPR_7 TPR_8

Protein Analysis

378

Amino Acids

42.52

Weight (kDa)

6.35

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
60KD_IMP	PF02096	134 - 332	2.2e-10	60Kd inner membrane protein
TPR_19	PF14559	393 - 442	3.5e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65080 AT3G44370 AT3G44370
fragaria_vesca	FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770
malus_domestica	MD12G1258300.v1.1
prunus_persica	Prupe.6G359000_v2.0.a1 Prupe.6G359000_v2.0.a1
pyrus_communis	pycom12g23690
rosa_chinensis	RchiOBHm_Chr3g0448211 RchiOBHm_Chr3g0448251
rosa_laevigata	RLG00000025933 RLG00000025937 RLG00000026017
rosa_multiflora	Rmu_co8073362.1_g000001 Rmu_sc0005582.1_g000001 Rmu_sc0005582.1_g000004 Rmu_sc0005969.1_g000036 Rmu_sc0005969.1_g000042 Rmu_sc0005969.1_g000047 Rmu_sc0013667.1_g000002
rosa_roxburghii	Rroxscaffold_6G00426350 Rroxscaffold_6G00426380
rosa_rugosa	Rorug02G0608800.1 Rorug02G0608900 Rorug02G0608900 Rorug02G0609400 Rorug02G0609500 Rorug04G0058300
rosa_samantha	Rh3AG008900 Rh3AG009200 Rh3BG008400 Rh3BG008800 Rh3CG008500 Rh3CG008900 Rh3DG009100 Rh3DG009500
rosa_wichuraiana	Rw3G000710 Rw3G000750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1041
AasI	GACNNNNNNGTC	1 cut(s)	1094
AccI	GTMKAC	1 cut(s)	1117
AccII	CGCG	1 cut(s)	765
AciI	CCGC	1 cut(s)	150
AclWI	GGATC	4 cut(s)	437, 450, 671, 1116
AcsI	RAATTY	3 cut(s)	502, 872, 1058
AcuI	CTGAAG	3 cut(s)	458, 900, 1034
AdeI	CACNNNGTG	1 cut(s)	162
AfaI	GTAC	5 cut(s)	65, 453, 690, 755, 787
AfiI	CCNNNNNNNGG	1 cut(s)	861
AgsI	TTSAA	3 cut(s)	262, 614, 916
AjnI	CCWGG	2 cut(s)	894, 1062
AleI	CACNNNNGTG	1 cut(s)	803
AluBI	AGCT	7 cut(s)	308, 408, 434, 542, 778, 1010, 1031
AluI	AGCT	7 cut(s)	308, 408, 434, 542, 778, 1010, 1031
Alw21I	GWGCWC	2 cut(s)	646, 982
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	4 cut(s)	437, 450, 671, 1116
AlwNI	CAGNNNCTG	1 cut(s)	580
ApeKI	GCWGC	2 cut(s)	1031, 1034
ApoI	RAATTY	3 cut(s)	502, 872, 1058
ArsI	GACNNNNNNTTYG	4 cut(s)	331, 363, 582, 614
AspLEI	GCGC	2 cut(s)	767, 1026
AspS9I	GGNCC	1 cut(s)	203
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	4 cut(s)	125, 525, 576, 949
AvaII	GGWCC	1 cut(s)	203
AxyI	CCTNAGG	1 cut(s)	375
BamHI	GGATCC	1 cut(s)	442
Bbv12I	GWGCWC	2 cut(s)	646, 982
BbvI	GCAGC	2 cut(s)	1018, 1021
BccI	CCATC	1 cut(s)	950
BceAI	ACGGC	1 cut(s)	878
BciT130I	CCWGG	2 cut(s)	896, 1064
BciVI	GTATCC	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	386
BfuI	GTATCC	1 cut(s)	511
BglII	AGATCT	1 cut(s)	592
BisI	GCNGC	2 cut(s)	1032, 1035
BlpI	GCTNAGC	1 cut(s)	1027
BlsI	GCNGC	2 cut(s)	1033, 1036
BmcAI	AGTACT	2 cut(s)	755, 787
Bme1390I	CCNGG	3 cut(s)	138, 896, 1064
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	3 cut(s)	56, 167, 444
BmrFI	CCNGG	3 cut(s)	138, 896, 1064
BmsI	GCATC	2 cut(s)	842, 1027
Bpu10I	CCTNAGC	1 cut(s)	538
Bpu1102I	GCTNAGC	1 cut(s)	1027
BpuEI	CTTGAG	1 cut(s)	689
BpuMI	CCSGG	1 cut(s)	138
BsaAI	YACGTR	1 cut(s)	455
BsaJI	CCNNGG	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	1 cut(s)	861
Bse1I	ACTGG	3 cut(s)	129, 793, 850
Bse21I	CCTNAGG	1 cut(s)	375
BseBI	CCWGG	2 cut(s)	896, 1064
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	3 cut(s)	41, 1009, 1090
BseLI	CCNNNNNNNGG	1 cut(s)	861
BseMII	CTCAG	5 cut(s)	389, 498, 672, 741, 851
BseNI	ACTGG	3 cut(s)	129, 793, 850
BseXI	GCAGC	2 cut(s)	1018, 1021
Bsh1236I	CGCG	1 cut(s)	765
BsiHKAI	GWGCWC	2 cut(s)	646, 982
BsiSI	CCGG	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	861
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	24
Bsp1286I	GDGCHC	2 cut(s)	646, 982
Bsp143I	GATC	5 cut(s)	442, 592, 676, 1102, 1121
Bsp1720I	GCTNAGC	1 cut(s)	1027
BspACI	CCGC	1 cut(s)	150
BspCNI	CTCAG	5 cut(s)	388, 499, 673, 742, 850
BspFNI	CGCG	1 cut(s)	765
BspHI	TCATGA	1 cut(s)	336
BspLI	GGNNCC	3 cut(s)	56, 167, 444
BspPI	GGATC	4 cut(s)	437, 450, 671, 1116
BsrI	ACTGG	3 cut(s)	129, 793, 850
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	5 cut(s)	442, 592, 676, 1102, 1121
Bst2UI	CCWGG	2 cut(s)	896, 1064
Bst4CI	ACNGT	2 cut(s)	1071, 1091
BstBAI	YACGTR	1 cut(s)	455
BstC8I	GCNNGC	1 cut(s)	972
BstDEI	CTNAG	8 cut(s)	375, 507, 538, 656, 681, 750, 837, 1027
BstF5I	GGATG	3 cut(s)	41, 1009, 1090
BstFNI	CGCG	1 cut(s)	765
BstHHI	GCGC	2 cut(s)	767, 1026
BstKTI	GATC	5 cut(s)	445, 595, 679, 1105, 1124
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	5 cut(s)	442, 592, 676, 1102, 1121
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 455
BstNI	CCWGG	2 cut(s)	896, 1064
BstSCI	CCNGG	3 cut(s)	136, 894, 1062
BstUI	CGCG	1 cut(s)	765
BstV1I	GCAGC	2 cut(s)	1018, 1021
BstX2I	RGATCY	3 cut(s)	442, 592, 676
BstXI	CCANNNNNNTGG	1 cut(s)	805
BstYI	RGATCY	3 cut(s)	442, 592, 676
Bsu36I	CCTNAGG	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	511
BtsCI	GGATG	3 cut(s)	41, 1009, 1090
BtsIMutI	CAGTG	4 cut(s)	122, 845, 1076, 1105
Cac8I	GCNNGC	1 cut(s)	972
CaiI	CAGNNNCTG	1 cut(s)	580
CciI	TCATGA	1 cut(s)	336
CfoI	GCGC	2 cut(s)	767, 1026
Cfr13I	GGNCC	1 cut(s)	203
Csp6I	GTAC	5 cut(s)	64, 452, 689, 754, 786
CviAII	CATG	2 cut(s)	191, 337
CviQI	GTAC	5 cut(s)	64, 452, 689, 754, 786
DdeI	CTNAG	8 cut(s)	375, 507, 538, 656, 681, 750, 837, 1027
DpnI	GATC	5 cut(s)	444, 594, 678, 1104, 1123
DpnII	GATC	5 cut(s)	442, 592, 676, 1102, 1121
DraIII	CACNNNGTG	1 cut(s)	162
DrdI	GACNNNNNNGTC	1 cut(s)	1094
DseDI	GACNNNNNNGTC	1 cut(s)	1094
Eco47I	GGWCC	1 cut(s)	203
Eco57I	CTGAAG	3 cut(s)	458, 900, 1034
Eco81I	CCTNAGG	1 cut(s)	375
EcoO109I	RGGNCCY	1 cut(s)	203
EcoRI	GAATTC	2 cut(s)	502, 1058
EcoRII	CCWGG	2 cut(s)	894, 1062
FaeI	CATG	2 cut(s)	194, 340
FaiI	YATR	8 cut(s)	192, 240, 338, 687, 770, 860, 1041, 1094
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	2 cut(s)	190, 336
FblI	GTMKAC	1 cut(s)	1117
Fnu4HI	GCNGC	2 cut(s)	1032, 1035
FokI	GGATG	3 cut(s)	48, 1016, 1097
Fsp4HI	GCNGC	2 cut(s)	1032, 1035
FspBI	CTAG	1 cut(s)	386
GlaI	GCGC	2 cut(s)	766, 1025
GluI	GCNGC	2 cut(s)	1032, 1035
HapII	CCGG	1 cut(s)	138
HhaI	GCGC	2 cut(s)	767, 1026
Hin1II	CATG	2 cut(s)	194, 340
Hin6I	GCGC	2 cut(s)	765, 1024
HinP1I	GCGC	2 cut(s)	765, 1024
HincII	GTYRAC	1 cut(s)	102
HindII	GTYRAC	1 cut(s)	102
HinfI	GANTC	2 cut(s)	79, 715
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	4 cut(s)	125, 525, 576, 949
Hpy166II	GTNNAC	3 cut(s)	102, 843, 1118
Hpy188III	TCNNGA	9 cut(s)	76, 169, 220, 262, 277, 337, 524, 668, 680
Hpy8I	GTNNAC	3 cut(s)	102, 843, 1118
HpyAV	CCTTC	5 cut(s)	280, 433, 620, 875, 934
HpyCH4III	ACNGT	2 cut(s)	1071, 1091
HpyCH4IV	ACGT	1 cut(s)	454
HpyCH4V	TGCA	5 cut(s)	235, 458, 724, 833, 908
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 455
HpyF3I	CTNAG	8 cut(s)	375, 507, 538, 656, 681, 750, 837, 1027
HpySE526I	ACGT	1 cut(s)	454
Hsp92II	CATG	2 cut(s)	194, 340
HspAI	GCGC	2 cut(s)	765, 1024
Kzo9I	GATC	5 cut(s)	442, 592, 676, 1102, 1121
Lsp1109I	GCAGC	2 cut(s)	1018, 1021
LweI	GCATC	2 cut(s)	842, 1027
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	1 cut(s)	454
MaeIII	GTNAC	4 cut(s)	120, 397, 570, 582
MalI	GATC	5 cut(s)	444, 594, 678, 1104, 1123
MboI	GATC	5 cut(s)	442, 592, 676, 1102, 1121
MboII	GAAGA	2 cut(s)	28, 261
MfeI	CAATTG	1 cut(s)	911
MflI	RGATCY	3 cut(s)	442, 592, 676
MhlI	GDGCHC	2 cut(s)	646, 982
MlyI	GAGTC	1 cut(s)	709
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	8 cut(s)	52, 198, 225, 384, 730, 736, 802, 1075
MseI	TTAA	3 cut(s)	243, 413, 965
MslI	CAYNNNNRTG	2 cut(s)	803, 838
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	3 cut(s)	138, 896, 1064
MunI	CAATTG	1 cut(s)	911
MvaI	CCWGG	2 cut(s)	896, 1064
MvnI	CGCG	1 cut(s)	765
MwoI	GCNNNNNNNGC	2 cut(s)	147, 455
NciI	CCSGG	1 cut(s)	138
NdeII	GATC	5 cut(s)	442, 592, 676, 1102, 1121
NlaIII	CATG	2 cut(s)	194, 340
NlaIV	GGNNCC	3 cut(s)	56, 167, 444
NmuCI	GTSAC	2 cut(s)	120, 582
OliI	CACNNNNGTG	1 cut(s)	803
PagI	TCATGA	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	79
PflFI	GACNNNGTC	1 cut(s)	479
PfoI	TCCNGGA	1 cut(s)	1062
PkrI	GCNGC	2 cut(s)	1033, 1036
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
Ppu21I	YACGTR	1 cut(s)	455
PpuMI	RGGWCCY	1 cut(s)	203
PsiI	TTATAA	1 cut(s)	1041
Psp5II	RGGWCCY	1 cut(s)	203
Psp6I	CCWGG	2 cut(s)	894, 1062
PspGI	CCWGG	2 cut(s)	894, 1062
PspN4I	GGNNCC	3 cut(s)	56, 167, 444
PspPI	GGNCC	1 cut(s)	203
PspPPI	RGGWCCY	1 cut(s)	203
PstNI	CAGNNNCTG	1 cut(s)	580
PsuI	RGATCY	3 cut(s)	442, 592, 676
PsyI	GACNNNGTC	1 cut(s)	479
RsaI	GTAC	5 cut(s)	65, 453, 690, 755, 787
RsaNI	GTAC	5 cut(s)	64, 452, 689, 754, 786
RseI	CAYNNNNRTG	2 cut(s)	803, 838
SaqAI	TTAA	3 cut(s)	243, 413, 965
SatI	GCNGC	2 cut(s)	1032, 1035
Sau3AI	GATC	5 cut(s)	442, 592, 676, 1102, 1121
Sau96I	GGNCC	1 cut(s)	203
ScaI	AGTACT	2 cut(s)	755, 787
SchI	GAGTC	1 cut(s)	709
ScrFI	CCNGG	3 cut(s)	138, 896, 1064
SduI	GDGCHC	2 cut(s)	646, 982
SfaNI	GCATC	2 cut(s)	842, 1027
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	2 cut(s)	803, 838
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
SsiI	CCGC	1 cut(s)	150
SspI	AATATT	1 cut(s)	370
SspMI	CTAG	1 cut(s)	386
StyD4I	CCNGG	3 cut(s)	136, 894, 1062
TaaI	ACNGT	2 cut(s)	1071, 1091
TaiI	ACGT	1 cut(s)	457
TaqI	TCGA	1 cut(s)	483
TatI	WGTACW	2 cut(s)	753, 785
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	3 cut(s)	243, 413, 965
Tru9I	TTAA	3 cut(s)	243, 413, 965
TscAI	CASTG	4 cut(s)	129, 845, 1076, 1105
TseFI	GTSAC	2 cut(s)	120, 582
TseI	GCWGC	2 cut(s)	1031, 1034
Tsp45I	GTSAC	2 cut(s)	120, 582
TspDTI	ATGAA	6 cut(s)	299, 325, 572, 942, 1020, 1071
TspRI	CASTG	4 cut(s)	129, 845, 1076, 1105
Tth111I	GACNNNGTC	1 cut(s)	479
VpaK11BI	GGWCC	1 cut(s)	203
XapI	RAATTY	3 cut(s)	502, 872, 1058
XmiI	GTMKAC	1 cut(s)	1117
XspI	CTAG	1 cut(s)	386
ZrmI	AGTACT	2 cut(s)	755, 787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.