Rmu_sc0013667.1_g000002

ALBINO3-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013667.1
OG0001721
Physical Location & Seq
Reverse (-)
6127 .. 9274
3148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013667.1_g000002.1.cds

Sequence Viewer

Length: 1077 bp
atggcatcgtcatcctactacctccgtcgccgctccgccgcctccctcctcctccgcgctctctctcagtctcactctcatcctccggcgcgtcaattccacctcctcgagaaccctaaccttctctctcctcacgtccctctcactcggagcaggagcagcagtgcctactcgtttgctccgactcgcactctcactctcactcactctctgtgtttggatttggatcgactcgccggagttgactcggcggcgactctgtcggcgatttctaattccggcgctgctgaagggtcgctgctgcacctgcgtcccattcaggacttgatttcagtgctcgattggttccatcagctcactggtttaccatggtggctagttatagtttcctccagtttggcaatgagaattgcattgctccccatgctcattgtgcaactcaaaaggttgaaaaggattgaaccatttcttcccagattgcctcctcccgggtcatcttgctacttagcaaagagttactttcgtcgaatttctctgtttgaaaagaggaggagggaaataggatgtccctcatttttatggctaattgcaatccccattgttcgggctctgtgcttttccctctggttcagaagtattcgagagatgtcactgagtaaccatccagggtttgattgtatctttattgctggtcatccgacaaaagtagaggacattgataatctaattgttgcatctcagtgggctggtagcgcctacatacgacagggaaaaatggaggaagggattgtacaccttgaaagaattgcacagttggaagagccagatgaaccaaagagcaaagctcattattttgatgggttgttaatgctggcaagtgctctatcaaatgtgggtcgcaaggatgaagctttaaagcatctgcgcttggctgctgcttctaatcctgcttacaaggagtacttggaacaatgtaaaaatatggatgacagtgttgtcagtggtaataggaaagtccagcaagacagaagaaaattgggcaacaagaagaaagacaagaaaaagaagaattgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02024 ko03060 ko03070 map02024 map03060 map03070
Pfam Domains
Protein Families
60KD_IMP TPR_16 TPR_7 TPR_8

Protein Analysis

358

Amino Acids

40.35

Weight (kDa)

9.81

Isoelectric Point (pI)

56.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 315
AasI GACNNNNNNGTC 1 cut(s) 995
Acc36I ACCTGC 1 cut(s) 315
AccBSI CCGCTC 1 cut(s) 33
AccII CGCG 2 cut(s) 57, 91
AciI CCGC 5 cut(s) 31, 36, 39, 55, 251
AclWI GGATC 1 cut(s) 234
AcsI RAATTY 1 cut(s) 528
AcuI CTGAAG 1 cut(s) 309
AfaI GTAC 2 cut(s) 792, 962
AfiI CCNNNNNNNGG 2 cut(s) 488, 603
AgsI TTSAA 4 cut(s) 451, 461, 542, 800
AjiI CACGTC 1 cut(s) 136
AjnI CCWGG 1 cut(s) 664
AluBI AGCT 3 cut(s) 355, 845, 911
AluI AGCT 3 cut(s) 355, 845, 911
Alw21I GWGCWC 2 cut(s) 339, 883
Alw26I GTCTC 1 cut(s) 75
AlwI GGATC 1 cut(s) 234
Ama87I CYCGRG 2 cut(s) 107, 488
ApeKI GCWGC 6 cut(s) 159, 284, 298, 301, 932, 935
ApoI RAATTY 1 cut(s) 528
Asp700I GAANNNNTTC 1 cut(s) 465
AspLEI GCGC 5 cut(s) 59, 91, 284, 755, 927
AsuC2I CCSGG 2 cut(s) 489, 490
AvaI CYCGRG 2 cut(s) 107, 488
BanII GRGCYC 1 cut(s) 610
BarI GAAGNNNNNNTAC 2 cut(s) 774, 806
Bbv12I GWGCWC 2 cut(s) 339, 883
BbvI GCAGC 6 cut(s) 171, 271, 285, 288, 919, 922
BccI CCATC 3 cut(s) 357, 669, 851
BciT130I CCWGG 1 cut(s) 666
BcnI CCSGG 2 cut(s) 489, 490
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 2 cut(s) 377, 1075
BfoI RGCGCY 2 cut(s) 285, 756
BfuAI ACCTGC 1 cut(s) 315
BisI GCNGC 9 cut(s) 31, 39, 160, 252, 285, 299, 302, 933, 936
BlsI GCNGC 9 cut(s) 32, 40, 161, 253, 286, 300, 303, 934, 937
BmcAI AGTACT 1 cut(s) 962
Bme1390I CCNGG 3 cut(s) 489, 490, 666
BmeT110I CYCGRG 2 cut(s) 107, 488
BmgBI CACGTC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 347
BmrFI CCNGG 3 cut(s) 489, 490, 666
BmsI GCATC 3 cut(s) 14, 743, 928
BplI GAGNNNNNCTC 2 cut(s) 829, 861
BpmI CTGGAG 1 cut(s) 376
BpuMI CCSGG 2 cut(s) 489, 490
BsaBI GATNNNNATC 1 cut(s) 225
BsaJI CCNNGG 3 cut(s) 368, 488, 665
BsaXI ACNNNNNCTCC 2 cut(s) 148, 178
Bsc4I CCNNNNNNNGG 2 cut(s) 488, 603
Bse1I ACTGG 2 cut(s) 364, 393
Bse3DI GCAATG 2 cut(s) 408, 413
Bse8I GATNNNNATC 1 cut(s) 225
BseBI CCWGG 1 cut(s) 666
BseDI CCNNGG 3 cut(s) 368, 488, 665
BseGI GGATG 7 cut(s) 11, 79, 569, 661, 694, 910, 991
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 2 cut(s) 488, 603
BseMI GCAATG 2 cut(s) 408, 413
BseMII CTCAG 3 cut(s) 80, 644, 752
BseNI ACTGG 2 cut(s) 364, 393
BseRI GAGGAG 7 cut(s) 38, 41, 95, 120, 474, 562, 565
BseXI GCAGC 6 cut(s) 171, 271, 285, 288, 919, 922
BsgI GTGCAG 1 cut(s) 287
Bsh1236I CGCG 2 cut(s) 57, 91
BsiHKAI GWGCWC 2 cut(s) 339, 883
BsiHKCI CYCGRG 2 cut(s) 107, 488
BsiSI CCGG 4 cut(s) 86, 237, 279, 489
BslFI GGGAC 3 cut(s) 122, 297, 552
BslI CCNNNNNNNGG 2 cut(s) 488, 603
BsmAI GTCTC 1 cut(s) 75
BsmFI GGGAC 3 cut(s) 122, 297, 552
BsoBI CYCGRG 2 cut(s) 107, 488
Bsp1286I GDGCHC 3 cut(s) 339, 610, 883
Bsp1407I TGTACA 1 cut(s) 790
Bsp143I GATC 1 cut(s) 226
Bsp19I CCATGG 1 cut(s) 368
BspACI CCGC 5 cut(s) 31, 36, 39, 55, 251
BspCNI CTCAG 3 cut(s) 79, 645, 751
BspFNI CGCG 2 cut(s) 57, 91
BspLI GGNNCC 1 cut(s) 347
BspMI ACCTGC 1 cut(s) 315
BspPI GGATC 1 cut(s) 234
BspQI GCTCTTC 1 cut(s) 813
BsrBI CCGCTC 1 cut(s) 33
BsrDI GCAATG 2 cut(s) 408, 413
BsrGI TGTACA 1 cut(s) 790
BsrI ACTGG 2 cut(s) 364, 393
BssECI CCNNGG 3 cut(s) 368, 488, 665
BssMI GATC 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 368
Bst2UI CCWGG 1 cut(s) 666
Bst4CI ACNGT 2 cut(s) 813, 992
Bst6I CTCTTC 1 cut(s) 813
BstAUI TGTACA 1 cut(s) 790
BstC8I GCNNGC 1 cut(s) 873
BstDEI CTNAG 4 cut(s) 66, 505, 653, 738
BstDSI CCRYGG 1 cut(s) 368
BstF5I GGATG 7 cut(s) 11, 79, 569, 661, 694, 910, 991
BstFNI CGCG 2 cut(s) 57, 91
BstH2I RGCGCY 2 cut(s) 285, 756
BstHHI GCGC 5 cut(s) 59, 91, 284, 755, 927
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 5 cut(s) 159, 307, 424, 433, 752
BstNI CCWGG 1 cut(s) 666
BstSCI CCNGG 3 cut(s) 487, 488, 664
BstUI CGCG 2 cut(s) 57, 91
BstV1I GCAGC 6 cut(s) 171, 271, 285, 288, 919, 922
BtgI CCRYGG 1 cut(s) 368
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 7 cut(s) 11, 79, 569, 661, 694, 910, 991
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 7 cut(s) 169, 339, 357, 650, 746, 997, 1006
BveI ACCTGC 1 cut(s) 315
Cac8I GCNNGC 1 cut(s) 873
CfoI GCGC 5 cut(s) 59, 91, 284, 755, 927
Cfr9I CCCGGG 1 cut(s) 488
CseI GACGC 2 cut(s) 80, 299
Csp6I GTAC 2 cut(s) 791, 961
CviAII CATG 2 cut(s) 369, 424
CviJI RGCY 9 cut(s) 355, 376, 583, 608, 746, 823, 845, 911, 932
CviKI_1 RGCY 9 cut(s) 355, 376, 583, 608, 746, 823, 845, 911, 932
CviQI GTAC 2 cut(s) 791, 961
DdeI CTNAG 4 cut(s) 66, 505, 653, 738
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
DraI TTTAAA 1 cut(s) 915
DrdI GACNNNNNNGTC 1 cut(s) 995
DseDI GACNNNNNNGTC 1 cut(s) 995
Eam1104I CTCTTC 1 cut(s) 813
EarI CTCTTC 1 cut(s) 813
EciI GGCGGA 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 368
Eco24I GRGCYC 1 cut(s) 610
Eco57I CTGAAG 1 cut(s) 309
Eco88I CYCGRG 2 cut(s) 107, 488
EcoRII CCWGG 1 cut(s) 664
EcoT14I CCWWGG 1 cut(s) 368
EcoT38I GRGCYC 1 cut(s) 610
ErhI CCWWGG 1 cut(s) 368
FaeI CATG 2 cut(s) 372, 427
FaiI YATR 6 cut(s) 370, 383, 425, 580, 761, 983
FalI AAGNNNNNCTT 4 cut(s) 503, 535, 947, 979
FaqI GGGAC 3 cut(s) 122, 297, 552
FatI CATG 2 cut(s) 368, 423
Fnu4HI GCNGC 9 cut(s) 31, 39, 160, 252, 285, 299, 302, 933, 936
FokI GGATG 6 cut(s) 66, 576, 648, 681, 917, 998
FriOI GRGCYC 1 cut(s) 610
Fsp4HI GCNGC 9 cut(s) 31, 39, 160, 252, 285, 299, 302, 933, 936
FspBI CTAG 2 cut(s) 377, 1075
GlaI GCGC 5 cut(s) 58, 90, 283, 754, 926
GluI GCNGC 9 cut(s) 31, 39, 160, 252, 285, 299, 302, 933, 936
GsuI CTGGAG 1 cut(s) 376
HaeII RGCGCY 2 cut(s) 285, 756
HapII CCGG 4 cut(s) 86, 237, 279, 489
HgaI GACGC 2 cut(s) 80, 299
HhaI GCGC 5 cut(s) 59, 91, 284, 755, 927
Hin1II CATG 2 cut(s) 372, 427
Hin6I GCGC 5 cut(s) 57, 89, 282, 753, 925
HinP1I GCGC 5 cut(s) 57, 89, 282, 753, 925
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 909
HinfI GANTC 4 cut(s) 184, 231, 245, 256
HpaII CCGG 4 cut(s) 86, 237, 279, 489
Hpy166II GTNNAC 3 cut(s) 244, 365, 793
Hpy188I TCNGA 4 cut(s) 150, 183, 632, 699
Hpy188III TCNNGA 3 cut(s) 109, 320, 641
Hpy8I GTNNAC 3 cut(s) 244, 365, 793
Hpy99I CGWCG 2 cut(s) 30, 528
HpyAV CCTTC 3 cut(s) 131, 284, 776
HpyCH4III ACNGT 2 cut(s) 813, 992
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 6 cut(s) 304, 413, 436, 590, 734, 809
HpyF10VI GCNNNNNNNGC 5 cut(s) 159, 307, 424, 433, 752
HpyF3I CTNAG 4 cut(s) 66, 505, 653, 738
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 2 cut(s) 372, 427
HspAI GCGC 5 cut(s) 57, 89, 282, 753, 925
Kzo9I GATC 1 cut(s) 226
LguI GCTCTTC 1 cut(s) 813
LmnI GCTCC 5 cut(s) 38, 150, 156, 184, 423
Lsp1109I GCAGC 6 cut(s) 171, 271, 285, 288, 919, 922
LweI GCATC 3 cut(s) 14, 743, 928
MaeI CTAG 2 cut(s) 377, 1075
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 3 cut(s) 515, 648, 656
MalI GATC 1 cut(s) 228
MbiI CCGCTC 1 cut(s) 33
MboI GATC 1 cut(s) 226
MboII GAAGA 4 cut(s) 461, 830, 1041, 1060
MhlI GDGCHC 3 cut(s) 339, 610, 883
MluCI AATT 9 cut(s) 95, 274, 408, 528, 585, 726, 804, 1034, 1069
MlyI GAGTC 4 cut(s) 178, 225, 239, 250
MmeI TCCRAC 3 cut(s) 206, 722, 795
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 2 cut(s) 866, 914
MslI CAYNNNNRTG 2 cut(s) 577, 739
MspI CCGG 4 cut(s) 86, 237, 279, 489
MspR9I CCNGG 3 cut(s) 489, 490, 666
MvaI CCWGG 1 cut(s) 666
MvnI CGCG 2 cut(s) 57, 91
MwoI GCNNNNNNNGC 5 cut(s) 159, 307, 424, 433, 752
NciI CCSGG 2 cut(s) 489, 490
NcoI CCATGG 1 cut(s) 368
NdeII GATC 1 cut(s) 226
NlaIII CATG 2 cut(s) 372, 427
NlaIV GGNNCC 1 cut(s) 347
NmeAIII GCCGAG 1 cut(s) 227
NmuCI GTSAC 1 cut(s) 648
PaeR7I CTCGAG 1 cut(s) 107
PaqCI CACCTGC 1 cut(s) 315
PciSI GCTCTTC 1 cut(s) 813
PcsI WCGNNNNNNNCGW 1 cut(s) 179
PdmI GAANNNNTTC 1 cut(s) 465
PflFI GACNNNGTC 1 cut(s) 259
PkrI GCNGC 9 cut(s) 32, 40, 161, 253, 286, 300, 303, 934, 937
PleI GAGTC 4 cut(s) 178, 225, 239, 250
PpsI GAGTC 4 cut(s) 178, 225, 239, 250
Psp6I CCWGG 1 cut(s) 664
PspGI CCWGG 1 cut(s) 664
PspN4I GGNNCC 1 cut(s) 347
PsyI GACNNNGTC 1 cut(s) 259
RsaI GTAC 2 cut(s) 792, 962
RsaNI GTAC 2 cut(s) 791, 961
RseI CAYNNNNRTG 2 cut(s) 577, 739
SapI GCTCTTC 1 cut(s) 813
SaqAI TTAA 2 cut(s) 866, 914
SatI GCNGC 9 cut(s) 31, 39, 160, 252, 285, 299, 302, 933, 936
Sau3AI GATC 1 cut(s) 226
ScaI AGTACT 1 cut(s) 962
SchI GAGTC 4 cut(s) 178, 225, 239, 250
ScrFI CCNGG 3 cut(s) 489, 490, 666
SduI GDGCHC 3 cut(s) 339, 610, 883
SfaNI GCATC 3 cut(s) 14, 743, 928
Sfr274I CTCGAG 1 cut(s) 107
SlaI CTCGAG 1 cut(s) 107
SmaI CCCGGG 1 cut(s) 490
SmiMI CAYNNNNRTG 2 cut(s) 577, 739
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 9 cut(s) 95, 274, 408, 528, 585, 726, 804, 1034, 1069
SsiI CCGC 5 cut(s) 31, 36, 39, 55, 251
SspMI CTAG 2 cut(s) 377, 1075
StyD4I CCNGG 3 cut(s) 487, 488, 664
StyI CCWWGG 1 cut(s) 368
TaaI ACNGT 2 cut(s) 813, 992
TaiI ACGT 1 cut(s) 138
TaqI TCGA 5 cut(s) 108, 229, 339, 526, 640
TasI AATT 9 cut(s) 95, 274, 408, 528, 585, 726, 804, 1034, 1069
TatI WGTACW 2 cut(s) 790, 960
TauI GCSGC 3 cut(s) 33, 41, 254
Tru1I TTAA 2 cut(s) 866, 914
Tru9I TTAA 2 cut(s) 866, 914
TscAI CASTG 7 cut(s) 169, 339, 364, 657, 746, 997, 1006
TseFI GTSAC 1 cut(s) 648
TseI GCWGC 6 cut(s) 159, 284, 298, 301, 932, 935
Tsp45I GTSAC 1 cut(s) 648
TspDTI ATGAA 2 cut(s) 843, 921
TspGWI ACGGA 1 cut(s) 14
TspMI CCCGGG 1 cut(s) 488
TspRI CASTG 7 cut(s) 169, 339, 364, 657, 746, 997, 1006
Tth111I GACNNNGTC 1 cut(s) 259
XapI RAATTY 1 cut(s) 528
XcmI CCANNNNNNNNNTGG 1 cut(s) 356
XhoI CTCGAG 1 cut(s) 107
XmaI CCCGGG 1 cut(s) 488
XmnI GAANNNNTTC 1 cut(s) 465
XspI CTAG 2 cut(s) 377, 1075
ZrmI AGTACT 1 cut(s) 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.