Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005969.1

Orthogroup ID

OG0001721

Physical Location & Seq

Genomic Coordinates Forward (+)

155876 .. 157641

Gene Structure 1766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005969.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atgagacctcgggacggtaggaaagacttcatcaccaactgtgaagaagatgatgatgatcccaaagatgtcaatttcagcccgccctaccccttgacaaccctactaattctcttgttgttcccttttgttggtaagaaactaggttttcccaattatatctggctacactcaccttttcaggcattagctctggctgatcctcgtgtatgtgcaaagttggggttgccggacaagaatcatagtaaagagacctcgagttgtgaggagttggataattctagactatcacccttggcctctcctatggaatcaaaaaagttatctgcgcagatcccgtctcctagagatctgagtaatactctattgcaaaagaaattgaatgcagaagcaaccgagtactttgagcgtgctataacaaagatctttattgctggtcatccgacaaaagtagaggacattgataatctaattgttgcatctcagtgggctggtagcgcctacatacgacagggaaaaatggaggaagggattgtacaccttgaaagaattgcacagttggaagagccagatgaaccaaagagcaaagctcattattttgattggttgttaatgctggcaagtgctctatcaaatgtgggtcgcaaggatgaagctttaaagcgtctgtgcttggctgctgcttataatcctgcttacaaggaatacttggaacaatgtaaaaatatggatgacagtgttgtcagtggtaataggaaagtccagcaagacaagaaaattgggcaacaagctagaagaaagacaagaaaaagaagaatcgctagcgtgttagtaacatcgtgtcgtagaagggttgttgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

60KD_IMP TPR_16 TPR_7 TPR_8

Protein Analysis

287

Amino Acids

32.5

Weight (kDa)

9.0

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65080 AT3G44370 AT3G44370
fragaria_vesca	FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770
malus_domestica	MD12G1258300.v1.1
prunus_persica	Prupe.6G359000_v2.0.a1 Prupe.6G359000_v2.0.a1
pyrus_communis	pycom12g23690
rosa_chinensis	RchiOBHm_Chr3g0448211 RchiOBHm_Chr3g0448251
rosa_laevigata	RLG00000025933 RLG00000025937 RLG00000026017
rosa_multiflora	Rmu_co8073362.1_g000001 Rmu_sc0005582.1_g000001 Rmu_sc0005582.1_g000004 Rmu_sc0005969.1_g000036 Rmu_sc0005969.1_g000042 Rmu_sc0005969.1_g000047 Rmu_sc0013667.1_g000002
rosa_roxburghii	Rroxscaffold_6G00426350 Rroxscaffold_6G00426380
rosa_rugosa	Rorug02G0608800.1 Rorug02G0608900 Rorug02G0608900 Rorug02G0609400 Rorug02G0609500 Rorug04G0058300
rosa_samantha	Rh3AG008900 Rh3AG009200 Rh3BG008400 Rh3BG008800 Rh3CG008500 Rh3CG008900 Rh3DG009100 Rh3DG009500
rosa_wichuraiana	Rw3G000710 Rw3G000750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	687
AasI	GACNNNNNNGTC	1 cut(s)	740
Acc16I	TGCGCA	1 cut(s)	330
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	3 cut(s)	53, 194, 328
AfaI	GTAC	2 cut(s)	401, 537
AfiI	CCNNNNNNNGG	2 cut(s)	14, 131
AgsI	TTSAA	2 cut(s)	382, 545
AluBI	AGCT	4 cut(s)	191, 590, 656, 791
AluI	AGCT	4 cut(s)	191, 590, 656, 791
Alw21I	GWGCWC	1 cut(s)	628
Alw26I	GTCTC	2 cut(s)	245, 345
AlwI	GGATC	3 cut(s)	53, 194, 328
Ama87I	CYCGRG	2 cut(s)	9, 256
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	2 cut(s)	677, 680
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	2 cut(s)	331, 500
AsuHPI	GGTGA	3 cut(s)	25, 165, 282
AsuNHI	GCTAGC	1 cut(s)	821
AvaI	CYCGRG	2 cut(s)	9, 256
BarI	GAAGNNNNNNTAC	2 cut(s)	519, 551
BauI	CACGAG	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	628
BbvI	GCAGC	2 cut(s)	664, 667
BcoDI	GTCTC	2 cut(s)	245, 345
BfaI	CTAG	5 cut(s)	143, 282, 345, 792, 822
BfoI	RGCGCY	1 cut(s)	501
BglII	AGATCT	2 cut(s)	349, 423
BisI	GCNGC	2 cut(s)	678, 681
BlsI	GCNGC	2 cut(s)	679, 682
BmcAI	AGTACT	1 cut(s)	401
BmeT110I	CYCGRG	2 cut(s)	9, 256
BmsI	GCATC	1 cut(s)	488
BmtI	GCTAGC	1 cut(s)	825
BplI	GAGNNNNNCTC	4 cut(s)	346, 378, 574, 606
BsaBI	GATNNNNATC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	2 cut(s)	8, 294
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 131
Bse8I	GATNNNNATC	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	8, 294
BseGI	GGATG	3 cut(s)	439, 655, 736
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	2 cut(s)	14, 131
BseMII	CTCAG	2 cut(s)	344, 497
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	2 cut(s)	664, 667
BshFI	GGCC	1 cut(s)	299
BsiHKAI	GWGCWC	1 cut(s)	628
BsiHKCI	CYCGRG	2 cut(s)	9, 256
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	2 cut(s)	14, 131
BsmAI	GTCTC	2 cut(s)	245, 345
BsmBI	CGTCTC	1 cut(s)	345
BsmFI	GGGAC	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	1 cut(s)	299
Bso31I	GGTCTC	1 cut(s)	245
BsoBI	CYCGRG	2 cut(s)	9, 256
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp1407I	TGTACA	1 cut(s)	535
Bsp143I	GATC	5 cut(s)	58, 199, 333, 349, 423
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	2 cut(s)	345, 496
BspOI	GCTAGC	1 cut(s)	825
BspPI	GGATC	3 cut(s)	53, 194, 328
BspQI	GCTCTTC	1 cut(s)	558
BspTNI	GGTCTC	1 cut(s)	245
BsrGI	TGTACA	1 cut(s)	535
BssECI	CCNNGG	2 cut(s)	8, 294
BssMI	GATC	5 cut(s)	58, 199, 333, 349, 423
BssSI	CACGAG	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	294
Bst2BI	CACGAG	1 cut(s)	204
Bst4CI	ACNGT	4 cut(s)	17, 41, 558, 737
Bst6I	CTCTTC	1 cut(s)	558
BstAUI	TGTACA	1 cut(s)	535
BstC8I	GCNNGC	4 cut(s)	83, 411, 618, 823
BstDEI	CTNAG	2 cut(s)	353, 483
BstF5I	GGATG	3 cut(s)	439, 655, 736
BstH2I	RGCGCY	1 cut(s)	501
BstHHI	GCGC	2 cut(s)	331, 500
BstKTI	GATC	5 cut(s)	61, 202, 336, 352, 426
BstMAI	GTCTC	2 cut(s)	245, 345
BstMBI	GATC	5 cut(s)	58, 199, 333, 349, 423
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstV1I	GCAGC	2 cut(s)	664, 667
BstX2I	RGATCY	3 cut(s)	333, 349, 423
BstYI	RGATCY	3 cut(s)	333, 349, 423
BsuRI	GGCC	1 cut(s)	299
BtsCI	GGATG	3 cut(s)	439, 655, 736
BtsIMutI	CAGTG	3 cut(s)	491, 742, 751
Cac8I	GCNNGC	4 cut(s)	83, 411, 618, 823
CfoI	GCGC	2 cut(s)	331, 500
CseI	GACGC	1 cut(s)	653
Csp6I	GTAC	2 cut(s)	400, 536
CviQI	GTAC	2 cut(s)	400, 536
DdeI	CTNAG	2 cut(s)	353, 483
DpnI	GATC	5 cut(s)	60, 201, 335, 351, 425
DpnII	GATC	5 cut(s)	58, 199, 333, 349, 423
DraI	TTTAAA	1 cut(s)	660
DrdI	GACNNNNNNGTC	1 cut(s)	740
DseDI	GACNNNNNNGTC	1 cut(s)	740
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
Eco130I	CCWWGG	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	245
Eco88I	CYCGRG	2 cut(s)	9, 256
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
Esp3I	CGTCTC	1 cut(s)	345
FaiI	YATR	8 cut(s)	159, 211, 243, 308, 416, 506, 687, 728
FalI	AAGNNNNNCTT	2 cut(s)	692, 724
FaqI	GGGAC	1 cut(s)	26
FauI	CCCGC	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	678, 681
FokI	GGATG	3 cut(s)	426, 662, 743
Fsp4HI	GCNGC	2 cut(s)	678, 681
FspBI	CTAG	5 cut(s)	143, 282, 345, 792, 822
FspI	TGCGCA	1 cut(s)	330
GlaI	GCGC	2 cut(s)	330, 499
GluI	GCNGC	2 cut(s)	678, 681
HaeII	RGCGCY	1 cut(s)	501
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	1 cut(s)	230
HgaI	GACGC	1 cut(s)	653
HhaI	GCGC	2 cut(s)	331, 500
Hin6I	GCGC	2 cut(s)	329, 498
HinP1I	GCGC	2 cut(s)	329, 498
HindIII	AAGCTT	1 cut(s)	654
HinfI	GANTC	3 cut(s)	238, 311, 816
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	3 cut(s)	25, 165, 282
Hpy166II	GTNNAC	1 cut(s)	538
Hpy188I	TCNGA	2 cut(s)	354, 444
Hpy188III	TCNNGA	2 cut(s)	11, 282
Hpy8I	GTNNAC	1 cut(s)	538
HpyAV	CCTTC	2 cut(s)	521, 843
HpyCH4III	ACNGT	4 cut(s)	17, 41, 558, 737
HpyCH4V	TGCA	5 cut(s)	215, 370, 386, 479, 554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	2 cut(s)	353, 483
HspAI	GCGC	2 cut(s)	329, 498
Kzo9I	GATC	5 cut(s)	58, 199, 333, 349, 423
LguI	GCTCTTC	1 cut(s)	558
Lsp1109I	GCAGC	2 cut(s)	664, 667
LweI	GCATC	1 cut(s)	488
MaeI	CTAG	5 cut(s)	143, 282, 345, 792, 822
MaeIII	GTNAC	1 cut(s)	832
MalI	GATC	5 cut(s)	60, 201, 335, 351, 425
MboI	GATC	5 cut(s)	58, 199, 333, 349, 423
MboII	GAAGA	5 cut(s)	56, 59, 575, 807, 825
MflI	RGATCY	3 cut(s)	333, 349, 423
MhlI	GDGCHC	1 cut(s)	628
MluCI	AATT	8 cut(s)	73, 108, 154, 277, 377, 471, 549, 777
MmeI	TCCRAC	3 cut(s)	252, 467, 540
MnlI	CCTC	7 cut(s)	18, 213, 259, 265, 310, 448, 517
MroXI	GAANNNNTTC	1 cut(s)	26
MseI	TTAA	2 cut(s)	611, 659
MslI	CAYNNNNRTG	1 cut(s)	484
MspI	CCGG	1 cut(s)	230
Mva1269I	GAATGC	1 cut(s)	388
MwoI	GCNNNNNNNGC	1 cut(s)	497
NdeII	GATC	5 cut(s)	58, 199, 333, 349, 423
NheI	GCTAGC	1 cut(s)	821
NsbI	TGCGCA	1 cut(s)	330
PaeR7I	CTCGAG	1 cut(s)	256
PciSI	GCTCTTC	1 cut(s)	558
PctI	GAATGC	1 cut(s)	388
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	3 cut(s)	238, 311, 816
PkrI	GCNGC	2 cut(s)	679, 682
PsiI	TTATAA	1 cut(s)	687
PspXI	VCTCGAGB	1 cut(s)	256
PsuI	RGATCY	3 cut(s)	333, 349, 423
RsaI	GTAC	2 cut(s)	401, 537
RsaNI	GTAC	2 cut(s)	400, 536
RseI	CAYNNNNRTG	1 cut(s)	484
SapI	GCTCTTC	1 cut(s)	558
SaqAI	TTAA	2 cut(s)	611, 659
SatI	GCNGC	2 cut(s)	678, 681
Sau3AI	GATC	5 cut(s)	58, 199, 333, 349, 423
ScaI	AGTACT	1 cut(s)	401
SduI	GDGCHC	1 cut(s)	628
SetI	ASST	9 cut(s)	10, 148, 178, 193, 257, 543, 592, 658, 793
SfaNI	GCATC	1 cut(s)	488
Sfr274I	CTCGAG	1 cut(s)	256
SlaI	CTCGAG	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	484
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	8 cut(s)	73, 108, 154, 277, 377, 471, 549, 777
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	5 cut(s)	143, 282, 345, 792, 822
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	4 cut(s)	17, 41, 558, 737
TaqI	TCGA	1 cut(s)	257
TasI	AATT	8 cut(s)	73, 108, 154, 277, 377, 471, 549, 777
TatI	WGTACW	2 cut(s)	399, 535
TfiI	GAWTC	3 cut(s)	238, 311, 816
Tru1I	TTAA	2 cut(s)	611, 659
Tru9I	TTAA	2 cut(s)	611, 659
TscAI	CASTG	3 cut(s)	491, 742, 751
TseI	GCWGC	2 cut(s)	677, 680
TspDTI	ATGAA	3 cut(s)	19, 588, 666
TspRI	CASTG	3 cut(s)	491, 742, 751
XbaI	TCTAGA	1 cut(s)	281
XhoI	CTCGAG	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	5 cut(s)	143, 282, 345, 792, 822
ZrmI	AGTACT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.