Rorug02G0608900

ALBINO3-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001721
Physical Location & Seq
Reverse (-)
72571319 .. 72573193
1875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0608900.1

Sequence Viewer

Length: 555 bp
ATGGCTACAATTTCAGTCTCACCATTCTCACCTCTCCACCCAATCCCTACCCTCACTCATTCCCATTCCCTCTCAATTCCCATTCCTTCTCCCACCGTTTCGTTTCGAAACGTTTCCGCGTCCTTCAAGCTTTTGAGTCCACTCAGGAACACCAGCTCCCGCAGACCCACAATTCTGAGGTCAGCCGAGGAAGAAACGCCTGTTCCGGCCGAAGAACTAGTCCCGGAAAAAGAAGAAGAAGAAGAAGGTAGTGCCGAGCAGCCCGTTTCGGTACCCGTTTCGCCCTCCGACACTCTCACCATGTTTTTTCAGGCTGATGGTACATTGAGTGATGCTGCTGTGCCTTCAGTGACCAAAGCCTTAGAGGCAACTGAAGGGATTACCAACTTGAAGGTTGAAGTTCATGAGGGTATTGGAGTTGTTGAGTTGAAAAAGCAGACAACAGTACAAGCTACTGGGGTGGCTTCCAGTTTGGTTGAGGCTATACAGAGTTCAGGGTTTAAGCTACAAACTTTGAATTTGAGTTTCGAGGAAGAAGAGGAAATTGCTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02024 ko03060 ko03070 map02024 map03060 map03070
Pfam Domains
Protein Families
60KD_IMP TPR_16 TPR_7 TPR_8

Protein Analysis

184

Amino Acids

19.65

Weight (kDa)

4.61

Isoelectric Point (pI)

70.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 271
AccB1I GGYRCC 1 cut(s) 271
AccII CGCG 1 cut(s) 119
AciI CCGC 2 cut(s) 117, 160
AclI AACGTT 1 cut(s) 111
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 1 cut(s) 517
AcuI CTGAAG 2 cut(s) 330, 393
AfaI GTAC 3 cut(s) 273, 322, 447
AgsI TTSAA 5 cut(s) 127, 391, 398, 430, 517
AhlI ACTAGT 1 cut(s) 217
AloI GAACNNNNNNTCC 2 cut(s) 140, 172
AluBI AGCT 4 cut(s) 130, 156, 452, 505
AluI AGCT 4 cut(s) 130, 156, 452, 505
Alw26I GTCTC 1 cut(s) 22
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 2 cut(s) 259, 335
ApoI RAATTY 1 cut(s) 517
ArsI GACNNNNNNTTYG 2 cut(s) 204, 236
Asp700I GAANNNNTTC 1 cut(s) 112
Asp718I GGTACC 1 cut(s) 271
AsuC2I CCSGG 1 cut(s) 224
AsuHPI GGTGA 3 cut(s) 12, 21, 289
AsuII TTCGAA 1 cut(s) 106
BanI GGYRCC 1 cut(s) 271
BbvI GCAGC 2 cut(s) 271, 322
BccI CCATC 1 cut(s) 311
BcnI CCSGG 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 22
BcuI ACTAGT 1 cut(s) 217
BfaI CTAG 1 cut(s) 218
BglI GCCNNNNNGGC 1 cut(s) 365
BisI GCNGC 2 cut(s) 260, 336
BlsI GCNGC 2 cut(s) 261, 337
Bme1390I CCNGG 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 273
BmrFI CCNGG 1 cut(s) 224
BmrI ACTGGG 1 cut(s) 465
BmsI GCATC 1 cut(s) 322
BmuI ACTGGG 1 cut(s) 465
Bpu14I TTCGAA 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 186
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bse1I ACTGG 2 cut(s) 460, 468
BseDI CCNNGG 1 cut(s) 186
BseMII CTCAG 2 cut(s) 157, 167
BseNI ACTGG 2 cut(s) 460, 468
BseX3I CGGCCG 1 cut(s) 207
BseXI GCAGC 2 cut(s) 271, 322
Bsh1236I CGCG 1 cut(s) 119
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 1 cut(s) 209
BshNI GGYRCC 1 cut(s) 271
BsiEI CGRYCG 1 cut(s) 210
BsiSI CCGG 2 cut(s) 206, 224
BslFI GGGAC 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 1 cut(s) 209
Bsp119I TTCGAA 1 cut(s) 106
BspACI CCGC 2 cut(s) 117, 160
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 2 cut(s) 156, 168
BspFNI CGCG 1 cut(s) 119
BspHI TCATGA 1 cut(s) 403
BspLI GGNNCC 1 cut(s) 273
BspT104I TTCGAA 1 cut(s) 106
BspT107I GGYRCC 1 cut(s) 271
BsrI ACTGG 2 cut(s) 460, 468
BssECI CCNNGG 1 cut(s) 186
Bst4CI ACNGT 2 cut(s) 97, 445
Bst6I CTCTTC 1 cut(s) 531
BstBI TTCGAA 1 cut(s) 106
BstDEI CTNAG 3 cut(s) 143, 176, 361
BstFNI CGCG 1 cut(s) 119
BstMAI GTCTC 1 cut(s) 22
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 1 cut(s) 365
BstSCI CCNGG 1 cut(s) 222
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 2 cut(s) 271, 322
BstZI CGGCCG 1 cut(s) 207
BsuRI GGCC 1 cut(s) 209
BtsIMutI CAGTG 1 cut(s) 354
CciI TCATGA 1 cut(s) 403
CseI GACGC 1 cut(s) 108
Csp6I GTAC 3 cut(s) 272, 321, 446
CviAII CATG 2 cut(s) 301, 404
CviQI GTAC 3 cut(s) 272, 321, 446
DdeI CTNAG 3 cut(s) 143, 176, 361
EaeI YGGCCR 1 cut(s) 207
EagI CGGCCG 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
EclXI CGGCCG 1 cut(s) 207
Eco52I CGGCCG 1 cut(s) 207
Eco57I CTGAAG 2 cut(s) 330, 393
FaeI CATG 2 cut(s) 304, 407
FaiI YATR 4 cut(s) 302, 405, 485, 553
FaqI GGGAC 1 cut(s) 206
FatI CATG 2 cut(s) 300, 403
FauI CCCGC 1 cut(s) 167
Fnu4HI GCNGC 2 cut(s) 260, 336
Fsp4HI GCNGC 2 cut(s) 260, 336
FspBI CTAG 1 cut(s) 218
GluI GCNGC 2 cut(s) 260, 336
HaeIII GGCC 1 cut(s) 209
HapII CCGG 2 cut(s) 206, 224
HgaI GACGC 1 cut(s) 108
Hin1II CATG 2 cut(s) 304, 407
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 1 cut(s) 136
HpaII CCGG 2 cut(s) 206, 224
HphI GGTGA 3 cut(s) 12, 21, 289
Hpy166II GTNNAC 1 cut(s) 140
Hpy188I TCNGA 2 cut(s) 177, 289
Hpy188III TCNNGA 2 cut(s) 145, 404
Hpy8I GTNNAC 1 cut(s) 140
HpyAV CCTTC 6 cut(s) 96, 133, 239, 354, 368, 385
HpyCH4III ACNGT 2 cut(s) 97, 445
HpyCH4IV ACGT 1 cut(s) 111
HpyF10VI GCNNNNNNNGC 1 cut(s) 365
HpyF3I CTNAG 3 cut(s) 143, 176, 361
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 2 cut(s) 304, 407
KpnI GGTACC 1 cut(s) 275
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 9 cut(s) 130, 166, 213, 219, 237, 296, 441, 480, 481
Lsp1109I GCAGC 2 cut(s) 271, 322
LweI GCATC 1 cut(s) 322
MaeI CTAG 1 cut(s) 218
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 349
MboII GAAGA 8 cut(s) 203, 224, 245, 248, 251, 254, 545, 548
MluCI AATT 5 cut(s) 9, 75, 171, 517, 543
MlyI GAGTC 1 cut(s) 145
MmeI TCCRAC 1 cut(s) 312
MroXI GAANNNNTTC 1 cut(s) 112
MseI TTAA 1 cut(s) 501
MspI CCGG 2 cut(s) 206, 224
MspR9I CCNGG 1 cut(s) 224
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 365
NciI CCSGG 1 cut(s) 224
NlaIII CATG 2 cut(s) 304, 407
NlaIV GGNNCC 1 cut(s) 273
NmeAIII GCCGAG 2 cut(s) 211, 280
NmuCI GTSAC 1 cut(s) 349
NspV TTCGAA 1 cut(s) 106
PagI TCATGA 1 cut(s) 403
PdmI GAANNNNTTC 1 cut(s) 112
PfoI TCCNGGA 1 cut(s) 222
PkrI GCNGC 2 cut(s) 261, 337
PleI GAGTC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 144
Psp1406I AACGTT 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 273
RsaI GTAC 3 cut(s) 273, 322, 447
RsaNI GTAC 3 cut(s) 272, 321, 446
SaqAI TTAA 1 cut(s) 501
SatI GCNGC 2 cut(s) 260, 336
SchI GAGTC 1 cut(s) 145
ScrFI CCNGG 1 cut(s) 224
SetI ASST 9 cut(s) 34, 114, 132, 158, 182, 250, 396, 454, 507
SfaNI GCATC 1 cut(s) 322
SfuI TTCGAA 1 cut(s) 106
SpeI ACTAGT 1 cut(s) 217
Sse9I AATT 5 cut(s) 9, 75, 171, 517, 543
SsiI CCGC 2 cut(s) 117, 160
SspMI CTAG 1 cut(s) 218
StyD4I CCNGG 1 cut(s) 222
TaaI ACNGT 2 cut(s) 97, 445
TaiI ACGT 1 cut(s) 114
TaqI TCGA 2 cut(s) 106, 528
TasI AATT 5 cut(s) 9, 75, 171, 517, 543
TatI WGTACW 1 cut(s) 445
Tru1I TTAA 1 cut(s) 501
Tru9I TTAA 1 cut(s) 501
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 2 cut(s) 259, 335
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 1 cut(s) 392
TspRI CASTG 1 cut(s) 354
XapI RAATTY 1 cut(s) 517
XmnI GAANNNNTTC 1 cut(s) 112
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.