Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005969.1

Orthogroup ID

OG0001721

Physical Location & Seq

Genomic Coordinates Reverse (-)

166878 .. 167691

Gene Structure 814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005969.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgttacttatcagtcgctcatgcttgtcaattgctgtgctatgttctatctcagtattctttgcttattcagtcattaatcagaagctgattaccggggttcccacaagagtggaggatattgataatctaattcttgcgtctcagtggactggtgttgcctacatacggcagggaaaattcacagaagggattgtacacctggatagaattgctcaattgaaagagccagatgatccaaagagcaaggctcattattttgacgggttgttaatgctggcaagtgctctatccaatgtgggtcgcaaggatgaagctttaaagcacctgcgcttggctgctgcttataatcctgcttacaatgaatacgtggaacagtgtgaaaatgaggacgatggtttagtcagtgatcttgccagcagtagacgatccgattattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

60KD_IMP TPR_16 TPR_7 TPR_8

Protein Analysis

146

Amino Acids

16.26

Weight (kDa)

5.31

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65080 AT3G44370 AT3G44370
fragaria_vesca	FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770
malus_domestica	MD12G1258300.v1.1
prunus_persica	Prupe.6G359000_v2.0.a1 Prupe.6G359000_v2.0.a1
pyrus_communis	pycom12g23690
rosa_chinensis	RchiOBHm_Chr3g0448211 RchiOBHm_Chr3g0448251
rosa_laevigata	RLG00000025933 RLG00000025937 RLG00000026017
rosa_multiflora	Rmu_co8073362.1_g000001 Rmu_sc0005582.1_g000001 Rmu_sc0005582.1_g000004 Rmu_sc0005969.1_g000036 Rmu_sc0005969.1_g000042 Rmu_sc0005969.1_g000047 Rmu_sc0013667.1_g000002
rosa_roxburghii	Rroxscaffold_6G00426350 Rroxscaffold_6G00426380
rosa_rugosa	Rorug02G0608800.1 Rorug02G0608900 Rorug02G0608900 Rorug02G0609400 Rorug02G0609500 Rorug04G0058300
rosa_samantha	Rh3AG008900 Rh3AG009200 Rh3BG008400 Rh3BG008800 Rh3CG008500 Rh3CG008900 Rh3DG009100 Rh3DG009500
rosa_wichuraiana	Rw3G000710 Rw3G000750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	348
AarI	CACCTGC	1 cut(s)	336
Acc36I	ACCTGC	1 cut(s)	336
AccI	GTMKAC	1 cut(s)	424
AclWI	GGATC	2 cut(s)	230, 423
AcsI	RAATTY	1 cut(s)	179
AfaI	GTAC	1 cut(s)	198
AfiI	CCNNNNNNNGG	2 cut(s)	168, 334
AgsI	TTSAA	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	201
AleI	CACNNNNGTG	1 cut(s)	110
AluBI	AGCT	2 cut(s)	88, 317
AluI	AGCT	2 cut(s)	88, 317
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	2 cut(s)	230, 423
AlwNI	CAGNNNCTG	1 cut(s)	88
ApeKI	GCWGC	2 cut(s)	338, 341
ApoI	RAATTY	1 cut(s)	179
AseI	ATTAAT	1 cut(s)	78
AspLEI	GCGC	1 cut(s)	333
AsuC2I	CCSGG	1 cut(s)	97
BarI	GAAGNNNNNNTAC	2 cut(s)	180, 212
Bbv12I	GWGCWC	1 cut(s)	289
BbvI	GCAGC	2 cut(s)	325, 328
BccI	CCATC	1 cut(s)	389
BceAI	ACGGC	1 cut(s)	185
BciT130I	CCWGG	1 cut(s)	203
BcnI	CCSGG	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	336
BisI	GCNGC	2 cut(s)	339, 342
BlsI	GCNGC	2 cut(s)	340, 343
Bme1390I	CCNGG	2 cut(s)	97, 203
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	2 cut(s)	97, 203
BplI	GAGNNNNNCTC	2 cut(s)	235, 267
BpuMI	CCSGG	1 cut(s)	97
BsaAI	YACGTR	1 cut(s)	370
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 334
Bse1I	ACTGG	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	1 cut(s)	316
BseLI	CCNNNNNNNGG	2 cut(s)	168, 334
BseMII	CTCAG	2 cut(s)	66, 158
BseNI	ACTGG	1 cut(s)	157
BseXI	GCAGC	2 cut(s)	325, 328
BsiHKAI	GWGCWC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	168, 334
BsmAI	GTCTC	1 cut(s)	147
BsmBI	CGTCTC	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp1407I	TGTACA	1 cut(s)	196
Bsp143I	GATC	3 cut(s)	235, 409, 428
BspCNI	CTCAG	2 cut(s)	65, 157
BspLI	GGNNCC	1 cut(s)	102
BspMI	ACCTGC	1 cut(s)	336
BspPI	GGATC	2 cut(s)	230, 423
BsrGI	TGTACA	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	3 cut(s)	235, 409, 428
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	378
BstAUI	TGTACA	1 cut(s)	196
BstBAI	YACGTR	1 cut(s)	370
BstC8I	GCNNGC	2 cut(s)	279, 418
BstDEI	CTNAG	2 cut(s)	52, 144
BstF5I	GGATG	1 cut(s)	316
BstHHI	GCGC	1 cut(s)	333
BstKTI	GATC	3 cut(s)	238, 412, 431
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	3 cut(s)	235, 409, 428
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	2 cut(s)	95, 201
BstV1I	GCAGC	2 cut(s)	325, 328
BstXI	CCANNNNNNTGG	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	316
BtsIMutI	CAGTG	3 cut(s)	152, 383, 412
BveI	ACCTGC	1 cut(s)	336
Cac8I	GCNNGC	2 cut(s)	279, 418
CaiI	CAGNNNCTG	1 cut(s)	88
CfoI	GCGC	1 cut(s)	333
CseI	GACGC	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	197
CviAII	CATG	1 cut(s)	21
CviJI	RGCY	5 cut(s)	88, 229, 251, 317, 338
CviKI_1	RGCY	5 cut(s)	88, 229, 251, 317, 338
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	2 cut(s)	52, 144
DpnI	GATC	3 cut(s)	237, 411, 430
DpnII	GATC	3 cut(s)	235, 409, 428
DraI	TTTAAA	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	201
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	1 cut(s)	24
FaiI	YATR	4 cut(s)	22, 43, 167, 348
FatI	CATG	1 cut(s)	20
FblI	GTMKAC	1 cut(s)	424
Fnu4HI	GCNGC	2 cut(s)	339, 342
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	2 cut(s)	339, 342
GlaI	GCGC	1 cut(s)	332
GluI	GCNGC	2 cut(s)	339, 342
HapII	CCGG	1 cut(s)	96
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	1 cut(s)	333
Hin1II	CATG	1 cut(s)	24
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HindIII	AAGCTT	1 cut(s)	315
HpaII	CCGG	1 cut(s)	96
Hpy166II	GTNNAC	3 cut(s)	150, 199, 425
Hpy188I	TCNGA	2 cut(s)	84, 433
Hpy8I	GTNNAC	3 cut(s)	150, 199, 425
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	378
HpyCH4IV	ACGT	1 cut(s)	369
HpyF3I	CTNAG	2 cut(s)	52, 144
HpySE526I	ACGT	1 cut(s)	369
Hsp92II	CATG	1 cut(s)	24
HspAI	GCGC	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	235, 409, 428
Lsp1109I	GCAGC	2 cut(s)	325, 328
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	3 cut(s)	237, 411, 430
MboI	GATC	3 cut(s)	235, 409, 428
MfeI	CAATTG	2 cut(s)	30, 218
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	5 cut(s)	30, 132, 179, 210, 218
MnlI	CCTC	2 cut(s)	109, 382
MseI	TTAA	3 cut(s)	78, 272, 320
MslI	CAYNNNNRTG	1 cut(s)	110
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	2 cut(s)	97, 203
MunI	CAATTG	2 cut(s)	30, 218
MvaI	CCWGG	1 cut(s)	203
NciI	CCSGG	1 cut(s)	97
NdeII	GATC	3 cut(s)	235, 409, 428
NlaIII	CATG	1 cut(s)	24
NlaIV	GGNNCC	1 cut(s)	102
OliI	CACNNNNGTG	1 cut(s)	110
PaqCI	CACCTGC	1 cut(s)	336
PkrI	GCNGC	2 cut(s)	340, 343
Ppu21I	YACGTR	1 cut(s)	370
PshBI	ATTAAT	1 cut(s)	78
PsiI	TTATAA	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	102
PstNI	CAGNNNCTG	1 cut(s)	88
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	3 cut(s)	78, 272, 320
SatI	GCNGC	2 cut(s)	339, 342
Sau3AI	GATC	3 cut(s)	235, 409, 428
ScrFI	CCNGG	2 cut(s)	97, 203
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	5 cut(s)	90, 204, 319, 330, 372
SmiMI	CAYNNNNRTG	1 cut(s)	110
Sse9I	AATT	5 cut(s)	30, 132, 179, 210, 218
StyD4I	CCNGG	2 cut(s)	95, 201
TaaI	ACNGT	1 cut(s)	378
TaiI	ACGT	1 cut(s)	372
TasI	AATT	5 cut(s)	30, 132, 179, 210, 218
TatI	WGTACW	1 cut(s)	196
Tru1I	TTAA	3 cut(s)	78, 272, 320
Tru9I	TTAA	3 cut(s)	78, 272, 320
TscAI	CASTG	3 cut(s)	152, 383, 412
TseI	GCWGC	2 cut(s)	338, 341
TspDTI	ATGAA	2 cut(s)	327, 378
TspRI	CASTG	3 cut(s)	152, 383, 412
VspI	ATTAAT	1 cut(s)	78
XapI	RAATTY	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.