Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001721

Physical Location & Seq

Genomic Coordinates Reverse (-)

41120 .. 45262

Gene Structure 4143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026017

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTCCCTCATTTTGATGGCTAATTGCAATCCCCATTGTTCGGGACTTCGGGAATGCCAAGTTTCTCAAGAAAGTTTAGATTATGGTTGTAAGAGAAACATGTATTGGTCTTTCTACGACTTGGAATATTGTGCTCTTTTAGATATTGATGTTTCCCTTCCTTCCACTTCATCTCAGGCTCTGTGCATTTCCCTCTGGTTCAGAAGTATTCAAGAGATGTCATTGAGTAACCATCCAGGGTTTGATTGTTTGAGCAATCTATCTTTACTGATTTCAACCTTCAGGATTTGCTTTAAGCCATCTTCAGGAAGGAAGTTCATGTTTGGCTTATTATCTGAAGAAGAATTTAAGTTCCAATTGAAAGTTTTGACGCTGCCTATCTACTTGTTTTGCTATTTTGTTCCTCAGGGCTGTCTAGTCTATTGGGTCACAAGTAATTCACTCAATATTATTCAGGCATTAGCTCTGGCTGATCCTCGTGTATGTGCAAAGTTGGGGTTGCCAGACAAGAATCATAGTAAAGAGACTTCGAGTTGTGAGGAGTTGGATAATTCTAGACTATCACCCTTGGTCTCTCCTATGGAATCAAAAAAGATATCTCCGCAGATCCCATCCCCTAGAGATCTGAGTAATAGAGAGAGATCGAAGGGAAATTCTCACCTCATCATCTCAGCACGAGGTTTTTATTTGGTGGTTTGTATCAAATCTCCGAAAGGAAACCAAGCAAGGGAAGAAACAGCAATGAATCCTATACTATGGCACAAAGTAGCTGCAGTCTCTGAAGCCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

60KD_IMP TPR_16 TPR_7 TPR_8

Protein Analysis

264

Amino Acids

29.57

Weight (kDa)

7.92

Isoelectric Point (pI)

54.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65080 AT3G44370 AT3G44370
fragaria_vesca	FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770
malus_domestica	MD12G1258300.v1.1
prunus_persica	Prupe.6G359000_v2.0.a1 Prupe.6G359000_v2.0.a1
pyrus_communis	pycom12g23690
rosa_chinensis	RchiOBHm_Chr3g0448211 RchiOBHm_Chr3g0448251
rosa_laevigata	RLG00000025933 RLG00000025937 RLG00000026017
rosa_multiflora	Rmu_co8073362.1_g000001 Rmu_sc0005582.1_g000001 Rmu_sc0005582.1_g000004 Rmu_sc0005969.1_g000036 Rmu_sc0005969.1_g000042 Rmu_sc0005969.1_g000047 Rmu_sc0013667.1_g000002
rosa_roxburghii	Rroxscaffold_6G00426350 Rroxscaffold_6G00426380
rosa_rugosa	Rorug02G0608800.1 Rorug02G0608900 Rorug02G0608900 Rorug02G0609400 Rorug02G0609500 Rorug04G0058300
rosa_samantha	Rh3AG008900 Rh3AG009200 Rh3BG008400 Rh3BG008800 Rh3CG008500 Rh3CG008900 Rh3DG009100 Rh3DG009500
rosa_wichuraiana	Rw3G000710 Rw3G000750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	602
AclWI	GGATC	2 cut(s)	467, 601
AcsI	RAATTY	2 cut(s)	344, 652
AcuI	CTGAAG	3 cut(s)	265, 288, 357
AfiI	CCNNNNNNNGG	3 cut(s)	40, 305, 727
AflIII	ACRYGT	1 cut(s)	99
AgsI	TTSAA	3 cut(s)	212, 276, 361
AjnI	CCWGG	1 cut(s)	235
AjuI	GAANNNNNNNTTGG	2 cut(s)	88, 120
AluBI	AGCT	2 cut(s)	464, 770
AluI	AGCT	2 cut(s)	464, 770
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	3 cut(s)	518, 577, 781
AlwI	GGATC	2 cut(s)	467, 601
AlwNI	CAGNNNCTG	2 cut(s)	181, 779
ApeKI	GCWGC	2 cut(s)	373, 770
ApoI	RAATTY	2 cut(s)	344, 652
AsuHPI	GGTGA	2 cut(s)	555, 650
AxyI	CCTNAGG	1 cut(s)	405
BarI	GAAGNNNNNNTAC	2 cut(s)	511, 543
BauI	CACGAG	2 cut(s)	477, 675
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	2 cut(s)	360, 757
BccI	CCATC	4 cut(s)	10, 240, 307, 619
BciT130I	CCWGG	1 cut(s)	237
BcoDI	GTCTC	3 cut(s)	518, 577, 781
BfaI	CTAG	4 cut(s)	416, 555, 618, 790
BfmI	CTRYAG	1 cut(s)	771
BglII	AGATCT	1 cut(s)	622
BisI	GCNGC	2 cut(s)	374, 771
BlsI	GCNGC	2 cut(s)	375, 772
Bme1390I	CCNGG	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	577
BsaJI	CCNNGG	2 cut(s)	236, 567
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 305, 727
Bse21I	CCTNAGG	1 cut(s)	405
Bse3DI	GCAATG	1 cut(s)	747
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	2 cut(s)	236, 567
BseGI	GGATG	2 cut(s)	232, 611
BseLI	CCNNNNNNNGG	3 cut(s)	40, 305, 727
BseMI	GCAATG	1 cut(s)	747
BseMII	CTCAG	4 cut(s)	188, 419, 617, 684
BseRI	GAGGAG	1 cut(s)	554
BseXI	GCAGC	2 cut(s)	360, 757
BsiHKAI	GWGCWC	1 cut(s)	136
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	3 cut(s)	40, 305, 727
BsmAI	GTCTC	3 cut(s)	518, 577, 781
BsmFI	GGGAC	1 cut(s)	57
BsmI	GAATGC	1 cut(s)	59
Bso31I	GGTCTC	1 cut(s)	577
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	4 cut(s)	472, 606, 622, 641
BspACI	CCGC	1 cut(s)	602
BspCNI	CTCAG	4 cut(s)	187, 418, 618, 683
BspMAI	CTGCAG	1 cut(s)	775
BspPI	GGATC	2 cut(s)	467, 601
BspTNI	GGTCTC	1 cut(s)	577
BsrDI	GCAATG	1 cut(s)	747
BssECI	CCNNGG	2 cut(s)	236, 567
BssMI	GATC	4 cut(s)	472, 606, 622, 641
BssSI	CACGAG	2 cut(s)	477, 675
BssT1I	CCWWGG	1 cut(s)	567
Bst2BI	CACGAG	2 cut(s)	477, 675
Bst2UI	CCWGG	1 cut(s)	237
BstDEI	CTNAG	4 cut(s)	174, 405, 626, 670
BstF5I	GGATG	2 cut(s)	232, 611
BstKTI	GATC	4 cut(s)	475, 609, 625, 644
BstMAI	GTCTC	3 cut(s)	518, 577, 781
BstMBI	GATC	4 cut(s)	472, 606, 622, 641
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	1 cut(s)	771
BstV1I	GCAGC	2 cut(s)	360, 757
BstX2I	RGATCY	2 cut(s)	606, 622
BstYI	RGATCY	2 cut(s)	606, 622
Bsu36I	CCTNAGG	1 cut(s)	405
BtsCI	GGATG	2 cut(s)	232, 611
CaiI	CAGNNNCTG	2 cut(s)	181, 779
CseI	GACGC	1 cut(s)	379
CviAII	CATG	2 cut(s)	100, 319
CviJI	RGCY	9 cut(s)	20, 179, 298, 327, 411, 464, 470, 770, 785
CviKI_1	RGCY	9 cut(s)	20, 179, 298, 327, 411, 464, 470, 770, 785
DdeI	CTNAG	4 cut(s)	174, 405, 626, 670
DpnI	GATC	4 cut(s)	474, 608, 624, 643
DpnII	GATC	4 cut(s)	472, 606, 622, 641
Eco130I	CCWWGG	1 cut(s)	567
Eco31I	GGTCTC	1 cut(s)	577
Eco32I	GATATC	1 cut(s)	597
Eco57I	CTGAAG	3 cut(s)	265, 288, 357
Eco81I	CCTNAGG	1 cut(s)	405
EcoRII	CCWGG	1 cut(s)	235
EcoRV	GATATC	1 cut(s)	597
EcoT14I	CCWWGG	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	567
FaeI	CATG	2 cut(s)	103, 322
FaiI	YATR	8 cut(s)	84, 101, 320, 484, 516, 581, 752, 757
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	2 cut(s)	99, 318
Fnu4HI	GCNGC	2 cut(s)	374, 771
FokI	GGATG	2 cut(s)	219, 598
Fsp4HI	GCNGC	2 cut(s)	374, 771
FspBI	CTAG	4 cut(s)	416, 555, 618, 790
GluI	GCNGC	2 cut(s)	374, 771
HgaI	GACGC	1 cut(s)	379
Hin1II	CATG	2 cut(s)	103, 322
HinfI	GANTC	3 cut(s)	511, 584, 745
HphI	GGTGA	2 cut(s)	555, 650
Hpy188I	TCNGA	5 cut(s)	203, 337, 627, 711, 781
Hpy188III	TCNNGA	7 cut(s)	42, 50, 68, 212, 283, 306, 555
HpyAV	CCTTC	5 cut(s)	167, 171, 289, 303, 640
HpyCH4V	TGCA	4 cut(s)	27, 186, 488, 773
HpyF3I	CTNAG	4 cut(s)	174, 405, 626, 670
Hsp92II	CATG	2 cut(s)	103, 322
Kzo9I	GATC	4 cut(s)	472, 606, 622, 641
Lsp1109I	GCAGC	2 cut(s)	360, 757
MaeI	CTAG	4 cut(s)	416, 555, 618, 790
MaeIII	GTNAC	2 cut(s)	227, 427
MalI	GATC	4 cut(s)	474, 608, 624, 643
MboI	GATC	4 cut(s)	472, 606, 622, 641
MboII	GAAGA	4 cut(s)	294, 350, 353, 743
MfeI	CAATTG	1 cut(s)	356
MflI	RGATCY	2 cut(s)	606, 622
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	6 cut(s)	22, 344, 356, 436, 550, 652
MmeI	TCCRAC	1 cut(s)	525
MnlI	CCTC	7 cut(s)	17, 203, 414, 486, 532, 671, 671
MseI	TTAA	2 cut(s)	294, 348
MslI	CAYNNNNRTG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	237
MunI	CAATTG	1 cut(s)	356
Mva1269I	GAATGC	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	237
NdeII	GATC	4 cut(s)	472, 606, 622, 641
NlaIII	CATG	2 cut(s)	103, 322
NmuCI	GTSAC	1 cut(s)	427
NspI	RCATGY	1 cut(s)	103
PciI	ACATGT	1 cut(s)	99
PctI	GAATGC	1 cut(s)	59
PfeI	GAWTC	3 cut(s)	511, 584, 745
PkrI	GCNGC	2 cut(s)	375, 772
PscI	ACATGT	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PstI	CTGCAG	1 cut(s)	775
PstNI	CAGNNNCTG	2 cut(s)	181, 779
PsuI	RGATCY	2 cut(s)	606, 622
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	2 cut(s)	294, 348
SatI	GCNGC	2 cut(s)	374, 771
Sau3AI	GATC	4 cut(s)	472, 606, 622, 641
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	5 cut(s)	281, 466, 663, 682, 772
SfcI	CTRYAG	1 cut(s)	771
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	66
SmoI	CTYRAG	1 cut(s)	66
Sse9I	AATT	6 cut(s)	22, 344, 356, 436, 550, 652
SsiI	CCGC	1 cut(s)	602
SspI	AATATT	2 cut(s)	128, 448
SspMI	CTAG	4 cut(s)	416, 555, 618, 790
StyD4I	CCNGG	1 cut(s)	235
StyI	CCWWGG	1 cut(s)	567
TaqI	TCGA	2 cut(s)	530, 644
TasI	AATT	6 cut(s)	22, 344, 356, 436, 550, 652
TfiI	GAWTC	3 cut(s)	511, 584, 745
Tru1I	TTAA	2 cut(s)	294, 348
Tru9I	TTAA	2 cut(s)	294, 348
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	2 cut(s)	373, 770
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	3 cut(s)	159, 307, 758
XapI	RAATTY	2 cut(s)	344, 652
XbaI	TCTAGA	1 cut(s)	554
XceI	RCATGY	1 cut(s)	103
XspI	CTAG	4 cut(s)	416, 555, 618, 790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.