Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8073362.1

Orthogroup ID

OG0001721

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 385

Gene Structure 385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8073362.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

gaggaagggattgtacaccttgaaagaattgcacagttggaagagccagatgaaccaaagagcaaagctcattattttgatgggttgttaatgctggcaagtgctctatcaaatgtgggtcgcaaggatgaagctttaaagcatctgcgcttggctgctgcttctaatcctgcttacaaggagtacttggaacaatgtaaaaatatggatgacagtgttgtcagtggtaataggaaagtccagcaagacagaagaaaattgggcaacaagaagaaagacaagaaaaagaagaattgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

60KD_IMP TPR_16 TPR_7 TPR_8

Protein Analysis

99

Amino Acids

11.26

Weight (kDa)

9.25

Isoelectric Point (pI)

34.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65080 AT3G44370 AT3G44370
fragaria_vesca	FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770 FvH4_6g00770
malus_domestica	MD12G1258300.v1.1
prunus_persica	Prupe.6G359000_v2.0.a1 Prupe.6G359000_v2.0.a1
pyrus_communis	pycom12g23690
rosa_chinensis	RchiOBHm_Chr3g0448211 RchiOBHm_Chr3g0448251
rosa_laevigata	RLG00000025933 RLG00000025937 RLG00000026017
rosa_multiflora	Rmu_co8073362.1_g000001 Rmu_sc0005582.1_g000001 Rmu_sc0005582.1_g000004 Rmu_sc0005969.1_g000036 Rmu_sc0005969.1_g000042 Rmu_sc0005969.1_g000047 Rmu_sc0013667.1_g000002
rosa_roxburghii	Rroxscaffold_6G00426350 Rroxscaffold_6G00426380
rosa_rugosa	Rorug02G0608800.1 Rorug02G0608900 Rorug02G0608900 Rorug02G0609400 Rorug02G0609500 Rorug04G0058300
rosa_samantha	Rh3AG008900 Rh3AG009200 Rh3BG008400 Rh3BG008800 Rh3CG008500 Rh3CG008900 Rh3DG009100 Rh3DG009500
rosa_wichuraiana	Rw3G000710 Rw3G000750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
AfaI	GTAC	2 cut(s)	15, 185
AgsI	TTSAA	1 cut(s)	23
AluBI	AGCT	2 cut(s)	68, 134
AluI	AGCT	2 cut(s)	68, 134
Alw21I	GWGCWC	1 cut(s)	106
ApeKI	GCWGC	2 cut(s)	155, 158
AspLEI	GCGC	1 cut(s)	150
BarI	GAAGNNNNNNTAC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	106
BbvI	GCAGC	2 cut(s)	142, 145
BccI	CCATC	1 cut(s)	74
BfaI	CTAG	1 cut(s)	298
BisI	GCNGC	2 cut(s)	156, 159
BlsI	GCNGC	2 cut(s)	157, 160
BmcAI	AGTACT	1 cut(s)	185
BmsI	GCATC	1 cut(s)	151
BplI	GAGNNNNNCTC	2 cut(s)	52, 84
BseGI	GGATG	2 cut(s)	133, 214
BseXI	GCAGC	2 cut(s)	142, 145
BsiHKAI	GWGCWC	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp1407I	TGTACA	1 cut(s)	13
BspQI	GCTCTTC	1 cut(s)	36
BsrGI	TGTACA	1 cut(s)	13
Bst4CI	ACNGT	2 cut(s)	36, 215
Bst6I	CTCTTC	1 cut(s)	36
BstAUI	TGTACA	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	96
BstF5I	GGATG	2 cut(s)	133, 214
BstHHI	GCGC	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	142, 145
BtsCI	GGATG	2 cut(s)	133, 214
BtsIMutI	CAGTG	2 cut(s)	220, 229
Cac8I	GCNNGC	1 cut(s)	96
CfoI	GCGC	1 cut(s)	150
Csp6I	GTAC	2 cut(s)	14, 184
CviJI	RGCY	4 cut(s)	46, 68, 134, 155
CviKI_1	RGCY	4 cut(s)	46, 68, 134, 155
CviQI	GTAC	2 cut(s)	14, 184
DraI	TTTAAA	1 cut(s)	138
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
FaiI	YATR	1 cut(s)	206
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
Fnu4HI	GCNGC	2 cut(s)	156, 159
FokI	GGATG	2 cut(s)	140, 221
Fsp4HI	GCNGC	2 cut(s)	156, 159
FspBI	CTAG	1 cut(s)	298
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	2 cut(s)	156, 159
HhaI	GCGC	1 cut(s)	150
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	132
Hpy166II	GTNNAC	1 cut(s)	16
Hpy8I	GTNNAC	1 cut(s)	16
HpyCH4III	ACNGT	2 cut(s)	36, 215
HpyCH4V	TGCA	1 cut(s)	32
HspAI	GCGC	1 cut(s)	148
LguI	GCTCTTC	1 cut(s)	36
LpnPI	CCDG	4 cut(s)	60, 80, 183, 254
Lsp1109I	GCAGC	2 cut(s)	142, 145
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	1 cut(s)	298
MboII	GAAGA	3 cut(s)	53, 264, 283
MhlI	GDGCHC	1 cut(s)	106
MluCI	AATT	3 cut(s)	27, 257, 292
MmeI	TCCRAC	1 cut(s)	18
MseI	TTAA	2 cut(s)	89, 137
PciSI	GCTCTTC	1 cut(s)	36
PkrI	GCNGC	2 cut(s)	157, 160
RsaI	GTAC	2 cut(s)	15, 185
RsaNI	GTAC	2 cut(s)	14, 184
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	2 cut(s)	89, 137
SatI	GCNGC	2 cut(s)	156, 159
ScaI	AGTACT	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	106
SetI	ASST	3 cut(s)	21, 70, 136
SfaNI	GCATC	1 cut(s)	151
Sse9I	AATT	3 cut(s)	27, 257, 292
SspMI	CTAG	1 cut(s)	298
TaaI	ACNGT	2 cut(s)	36, 215
TasI	AATT	3 cut(s)	27, 257, 292
TatI	WGTACW	2 cut(s)	13, 183
Tru1I	TTAA	2 cut(s)	89, 137
Tru9I	TTAA	2 cut(s)	89, 137
TscAI	CASTG	2 cut(s)	220, 229
TseI	GCWGC	2 cut(s)	155, 158
TspDTI	ATGAA	2 cut(s)	66, 144
TspRI	CASTG	2 cut(s)	220, 229
XspI	CTAG	1 cut(s)	298
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.