Rorug02G0609400

ALBINO3-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001721
Physical Location & Seq
Forward (+)
72612288 .. 72613139
852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0609400.1

Sequence Viewer

Length: 852 bp
ATGGAGTGGCCCAACTTGCAACTGCCAGAAGCAGAAGTTTTTGTCTTGCATTTTCAGAGCCCAAGTAGGTACAGCTTGCCCGCGTTTGTACAGAAAATGGATAAATTGAAGGTACTGGTAATAGACGGCGGTAGGGAATTAATAAATTTTGAACTACTCGGTTTGTTACCAAATCTAAAGAAAATCAGTTTAATTGGTATCTCAATTGGTTTCAAAACCAACAAGCCCATACAACTGAAAAGTCTAAAGAAGATATCTTTCAAGTCATGTGACGCGGAGGGTATCGGCAAAGGTGTTTTCAGAATGTCGGATGCATTTCCGAATTTGGAGGAATTAAACTACTCCGAAGAATTTCGGAATGTCGGGTACCGTCGTCATTTAAACTCCGAAGAATTTCTTGTGGAGTGCTGCAATCTGATTCATTTAAAGAAGATTAGTATCTCTTTTGGGCGACGTGTCACCTTGCTACTTGACTTTATTGCTGGGCTACGTGACTTTTTGCCCGAAGAAATCGGAAATCTGGTCAACTTAGAAGTACTGAGGCTAAGGTCTTGTATTTTTCTTTCAAAGCTTCCCAGTTCCATCAGCAACCTCAAAAAGTTAAACTTCCTTGACATATCTGAATGCGTGAACATTGAGTTGCCTAAAAACATTGGTGAATTGAGCAGTTTAAGAAAGGTGGACATGAGGAGTTGCGACGATCTGAACGAGCTGCCTCCATCAGTTTTGGATCTTCATCAGTTAGAGACAGTGATTTGCAACGATGAAGACAAAGGCAGTTTATGGGAACCCTTTCTACCCACTCTCACAAACCTACGCGTGGTGGTGATTCCTCAAACCCAACCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02024 ko03060 ko03070 map02024 map03060 map03070
Pfam Domains
Protein Families
60KD_IMP TPR_16 TPR_7 TPR_8

Protein Analysis

283

Amino Acids

32.19

Weight (kDa)

6.16

Isoelectric Point (pI)

52.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 165 - 273 2.9e-13 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 366
AccB1I GGYRCC 1 cut(s) 366
AccII CGCG 3 cut(s) 83, 275, 819
AciI CCGC 3 cut(s) 81, 129, 275
AclWI GGATC 1 cut(s) 738
AcsI RAATTY 4 cut(s) 145, 322, 350, 392
AfaI GTAC 5 cut(s) 71, 90, 114, 368, 537
AfiI CCNNNNNNNGG 1 cut(s) 820
AflIII ACRYGT 2 cut(s) 454, 817
AgsI TTSAA 5 cut(s) 109, 152, 214, 262, 567
AjiI CACGTC 1 cut(s) 455
AluBI AGCT 3 cut(s) 75, 571, 712
AluI AGCT 3 cut(s) 75, 571, 712
Alw26I GTCTC 1 cut(s) 740
AlwI GGATC 1 cut(s) 738
AoxI GGCC 1 cut(s) 8
ApeKI GCWGC 2 cut(s) 408, 712
ApoI RAATTY 4 cut(s) 145, 322, 350, 392
AseI ATTAAT 1 cut(s) 140
Asp700I GAANNNNTTC 3 cut(s) 351, 393, 792
Asp718I GGTACC 1 cut(s) 366
AspS9I GGNCC 1 cut(s) 9
AsuHPI GGTGA 3 cut(s) 451, 668, 838
BaeI ACNNNNGTAYC 2 cut(s) 358, 391
BanI GGYRCC 1 cut(s) 366
BanII GRGCYC 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 774
BbvI GCAGC 2 cut(s) 395, 699
BccI CCATC 2 cut(s) 590, 727
BceAI ACGGC 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 740
BisI GCNGC 2 cut(s) 409, 713
BlsI GCNGC 2 cut(s) 410, 714
BmcAI AGTACT 1 cut(s) 537
BmgBI CACGTC 1 cut(s) 455
BmgT120I GGNCC 1 cut(s) 9
BmiI GGNNCC 2 cut(s) 368, 789
BmrI ACTGGG 1 cut(s) 570
BmsI GCATC 1 cut(s) 301
BmuI ACTGGG 1 cut(s) 570
BpiI GAAGAC 1 cut(s) 774
Bpu10I CCTNAGC 1 cut(s) 545
BsaAI YACGTR 1 cut(s) 491
BsaBI GATNNNNATC 2 cut(s) 437, 735
Bsc4I CCNNNNNNNGG 1 cut(s) 820
Bse1I ACTGG 2 cut(s) 120, 576
Bse8I GATNNNNATC 2 cut(s) 437, 735
BseGI GGATG 1 cut(s) 316
BseJI GATNNNNATC 2 cut(s) 437, 735
BseLI CCNNNNNNNGG 1 cut(s) 820
BseMII CTCAG 1 cut(s) 530
BseNI ACTGG 2 cut(s) 120, 576
BseRI GAGGAG 1 cut(s) 703
BseXI GCAGC 2 cut(s) 395, 699
BseYI CCCAGC 1 cut(s) 482
Bsh1236I CGCG 3 cut(s) 83, 275, 819
BshFI GGCC 1 cut(s) 10
BshNI GGYRCC 1 cut(s) 366
BslI CCNNNNNNNGG 1 cut(s) 820
BsmAI GTCTC 1 cut(s) 740
BsmI GAATGC 1 cut(s) 629
BsnI GGCC 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 62
Bsp1407I TGTACA 1 cut(s) 88
Bsp143I GATC 2 cut(s) 700, 730
BspACI CCGC 3 cut(s) 81, 129, 275
BspANI GGCC 1 cut(s) 10
BspCNI CTCAG 1 cut(s) 531
BspFNI CGCG 3 cut(s) 83, 275, 819
BspLI GGNNCC 2 cut(s) 368, 789
BspPI GGATC 1 cut(s) 738
BspT107I GGYRCC 1 cut(s) 366
BsrGI TGTACA 1 cut(s) 88
BsrI ACTGG 2 cut(s) 120, 576
BssMI GATC 2 cut(s) 700, 730
Bst4CI ACNGT 2 cut(s) 371, 751
BstAUI TGTACA 1 cut(s) 88
BstBAI YACGTR 1 cut(s) 491
BstC8I GCNNGC 2 cut(s) 77, 81
BstDEI CTNAG 3 cut(s) 529, 539, 545
BstF5I GGATG 1 cut(s) 316
BstFNI CGCG 3 cut(s) 83, 275, 819
BstKTI GATC 2 cut(s) 703, 733
BstMAI GTCTC 1 cut(s) 740
BstMBI GATC 2 cut(s) 700, 730
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstUI CGCG 3 cut(s) 83, 275, 819
BstV1I GCAGC 2 cut(s) 395, 699
BstV2I GAAGAC 1 cut(s) 774
BstX2I RGATCY 1 cut(s) 730
BstYI RGATCY 1 cut(s) 730
BsuRI GGCC 1 cut(s) 10
BtrI CACGTC 1 cut(s) 455
BtsCI GGATG 1 cut(s) 316
BtsIMutI CAGTG 1 cut(s) 756
Cac8I GCNNGC 2 cut(s) 77, 81
Cfr13I GGNCC 1 cut(s) 9
CseI GACGC 1 cut(s) 281
Csp6I GTAC 5 cut(s) 70, 89, 113, 367, 536
CviAII CATG 2 cut(s) 267, 685
CviJI RGCY 8 cut(s) 10, 60, 75, 226, 487, 544, 571, 712
CviKI_1 RGCY 8 cut(s) 10, 60, 75, 226, 487, 544, 571, 712
CviQI GTAC 5 cut(s) 70, 89, 113, 367, 536
DdeI CTNAG 3 cut(s) 529, 539, 545
DpnI GATC 2 cut(s) 702, 732
DpnII GATC 2 cut(s) 700, 730
DraI TTTAAA 2 cut(s) 381, 426
Eco24I GRGCYC 1 cut(s) 62
Eco32I GATATC 1 cut(s) 255
EcoRV GATATC 1 cut(s) 255
EcoT22I ATGCAT 1 cut(s) 316
EcoT38I GRGCYC 1 cut(s) 62
FaeI CATG 2 cut(s) 270, 688
FaiI YATR 5 cut(s) 230, 268, 617, 686, 784
FalI AAGNNNNNCTT 4 cut(s) 381, 413, 590, 622
FatI CATG 2 cut(s) 266, 684
FauI CCCGC 1 cut(s) 88
Fnu4HI GCNGC 2 cut(s) 409, 713
FokI GGATG 1 cut(s) 323
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 2 cut(s) 409, 713
GluI GCNGC 2 cut(s) 409, 713
GsaI CCCAGC 1 cut(s) 486
HaeIII GGCC 1 cut(s) 10
HgaI GACGC 1 cut(s) 281
Hin1II CATG 2 cut(s) 270, 688
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HindIII AAGCTT 1 cut(s) 569
HinfI GANTC 2 cut(s) 418, 829
HphI GGTGA 3 cut(s) 451, 668, 838
Hpy166II GTNNAC 3 cut(s) 526, 631, 682
Hpy8I GTNNAC 3 cut(s) 526, 631, 682
Hpy99I CGWCG 3 cut(s) 375, 456, 701
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 2 cut(s) 371, 751
HpyCH4IV ACGT 2 cut(s) 454, 490
HpyCH4V TGCA 5 cut(s) 19, 49, 314, 411, 759
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 3 cut(s) 529, 539, 545
HpySE526I ACGT 2 cut(s) 454, 490
Hsp92II CATG 2 cut(s) 270, 688
KpnI GGTACC 1 cut(s) 370
Kzo9I GATC 2 cut(s) 700, 730
LpnPI CCDG 5 cut(s) 39, 101, 468, 506, 589
Lsp1109I GCAGC 2 cut(s) 395, 699
LweI GCATC 1 cut(s) 301
MaeII ACGT 2 cut(s) 454, 490
MaeIII GTNAC 4 cut(s) 165, 269, 457, 491
MalI GATC 2 cut(s) 702, 732
MboI GATC 2 cut(s) 700, 730
MboII GAAGA 7 cut(s) 262, 359, 401, 442, 518, 725, 779
MfeI CAATTG 1 cut(s) 204
MflI RGATCY 1 cut(s) 730
MhlI GDGCHC 1 cut(s) 62
MluI ACGCGT 1 cut(s) 817
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 7 cut(s) 271, 322, 534, 602, 681, 726, 843
Mph1103I ATGCAT 1 cut(s) 316
MroXI GAANNNNTTC 3 cut(s) 351, 393, 792
MseI TTAA 7 cut(s) 140, 191, 335, 380, 425, 602, 671
MunI CAATTG 1 cut(s) 204
Mva1269I GAATGC 1 cut(s) 629
MvnI CGCG 3 cut(s) 83, 275, 819
MwoI GCNNNNNNNGC 1 cut(s) 16
NdeII GATC 2 cut(s) 700, 730
NlaIII CATG 2 cut(s) 270, 688
NlaIV GGNNCC 2 cut(s) 368, 789
NmuCI GTSAC 3 cut(s) 269, 457, 491
NsiI ATGCAT 1 cut(s) 316
PcsI WCGNNNNNNNCGW 1 cut(s) 705
PctI GAATGC 1 cut(s) 629
PdmI GAANNNNTTC 3 cut(s) 351, 393, 792
PfeI GAWTC 2 cut(s) 418, 829
PkrI GCNGC 2 cut(s) 410, 714
Ppu21I YACGTR 1 cut(s) 491
PshBI ATTAAT 1 cut(s) 140
PspFI CCCAGC 1 cut(s) 482
PspN4I GGNNCC 2 cut(s) 368, 789
PspPI GGNCC 1 cut(s) 9
PsrI GAACNNNNNNTAC 2 cut(s) 780, 812
PsuI RGATCY 1 cut(s) 730
RsaI GTAC 5 cut(s) 71, 90, 114, 368, 537
RsaNI GTAC 5 cut(s) 70, 89, 113, 367, 536
SaqAI TTAA 7 cut(s) 140, 191, 335, 380, 425, 602, 671
SatI GCNGC 2 cut(s) 409, 713
Sau3AI GATC 2 cut(s) 700, 730
Sau96I GGNCC 1 cut(s) 9
ScaI AGTACT 1 cut(s) 537
SduI GDGCHC 1 cut(s) 62
SfaNI GCATC 1 cut(s) 301
SsiI CCGC 3 cut(s) 81, 129, 275
TaaI ACNGT 2 cut(s) 371, 751
TaiI ACGT 2 cut(s) 457, 493
TatI WGTACW 2 cut(s) 88, 535
TfiI GAWTC 2 cut(s) 418, 829
Tru1I TTAA 7 cut(s) 140, 191, 335, 380, 425, 602, 671
Tru9I TTAA 7 cut(s) 140, 191, 335, 380, 425, 602, 671
TscAI CASTG 1 cut(s) 756
TseFI GTSAC 3 cut(s) 269, 457, 491
TseI GCWGC 2 cut(s) 408, 712
Tsp45I GTSAC 3 cut(s) 269, 457, 491
TspDTI ATGAA 3 cut(s) 410, 725, 780
TspRI CASTG 1 cut(s) 756
VspI ATTAAT 1 cut(s) 140
XapI RAATTY 4 cut(s) 145, 322, 350, 392
XmnI GAANNNNTTC 3 cut(s) 351, 393, 792
ZrmI AGTACT 1 cut(s) 537
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.