Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010575

Physical Location & Seq

Genomic Coordinates Forward (+)

513546 .. 514056

Gene Structure 511 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g00900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGGACGCACAGTTCGAAACCAGAAAAATCCTACCGTGGATGAGCGAGGGCTGCCACTTTGGTCACAACTAGTCAACTTTGTGATTAATCCCAGACCAGGTGACATAAAGATCGCTGTAACTGGTGCCTCCCTCACCGATGATGATGAGTTCAACAACTACACTCTAGACCTCAACATTACCCTTCGAAATCCTTACAAGCCTTTCCGCGTCTACTACGACAAGGCGCTTCTCGTCGCAGACTACCGTGACAAGGCCGCTATGGCCAGCATTGCCGGCTTTCACCAACCACCAAAAAACACGACTTTTCGGACACTCGTTCAAACTGCAGCGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

113

Amino Acids

12.7

Weight (kDa)

9.57

Isoelectric Point (pI)

19.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010575)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00900 FvH4_6g00940 FvH4_6g00941
rosa_chinensis	RchiOBHm_Chr3g0448391 RchiOBHm_Chr3g0448401
rosa_laevigata	RLG00000025916
rosa_multiflora	Rmu_co8385315.1_g000001 Rmu_sc0008044.1_g000003
rosa_rugosa	Rorug02G0612000 Rorug02G0612100
rosa_samantha	Rh3AG011200 Rh3AG011300 Rh3AG011400 Rh3BG011000 Rh3BG011100 Rh3CG010700 Rh3CG010800 Rh3DG011400 Rh3DG011500
rosa_wichuraiana	Rw3G000880 Rw3G000890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	125
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	1 cut(s)	210
AciI	CCGC	2 cut(s)	208, 258
AcoI	YGGCCR	1 cut(s)	264
AfiI	CCNNNNNNNGG	2 cut(s)	98, 253
AgsI	TTSAA	2 cut(s)	154, 323
AhlI	ACTAGT	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	97
AloI	GAACNNNNNNTCC	1 cut(s)	29
AoxI	GGCC	2 cut(s)	255, 264
ApeKI	GCWGC	2 cut(s)	52, 329
ArsI	GACNNNNNNTTYG	1 cut(s)	29
AseI	ATTAAT	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	229
AsuHPI	GGTGA	3 cut(s)	113, 127, 275
AsuII	TTCGAA	2 cut(s)	16, 187
BalI	TGGCCA	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	99
BcuI	ACTAGT	1 cut(s)	70
BfaI	CTAG	2 cut(s)	71, 167
BfmI	CTRYAG	1 cut(s)	327
BfoI	RGCGCY	1 cut(s)	230
BglI	GCCNNNNNGGC	1 cut(s)	263
BisI	GCNGC	3 cut(s)	53, 258, 330
BlsI	GCNGC	3 cut(s)	54, 259, 331
Bme1390I	CCNGG	1 cut(s)	99
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	99
Bpu14I	TTCGAA	2 cut(s)	16, 187
BsaJI	CCNNGG	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 253
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	2 cut(s)	98, 253
BseMI	GCAATG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	39
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	2 cut(s)	257, 266
BshNI	GGYRCC	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	276
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	98, 253
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	257, 266
Bsp119I	TTCGAA	2 cut(s)	16, 187
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	2 cut(s)	208, 258
BspANI	GGCC	2 cut(s)	257, 266
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	127
BspMAI	CTGCAG	1 cut(s)	331
BspT104I	TTCGAA	2 cut(s)	16, 187
BspT107I	GGYRCC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	270
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	127
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	3 cut(s)	13, 37, 248
BstBI	TTCGAA	2 cut(s)	16, 187
BstC8I	GCNNGC	2 cut(s)	268, 277
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	46
BstFNI	CGCG	1 cut(s)	210
BstH2I	RGCGCY	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 263, 272, 276
BstNI	CCWGG	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	97
BstSFI	CTRYAG	1 cut(s)	327
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	39
BsuRI	GGCC	2 cut(s)	257, 266
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	46
Cac8I	GCNNGC	2 cut(s)	268, 277
CfoI	GCGC	1 cut(s)	229
Cfr10I	RCCGGY	1 cut(s)	275
CseI	GACGC	2 cut(s)	15, 199
CsiI	ACCWGGT	1 cut(s)	97
CviJI	RGCY	5 cut(s)	52, 202, 257, 266, 279
CviKI_1	RGCY	5 cut(s)	52, 202, 257, 266, 279
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
EaeI	YGGCCR	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	97
FaiI	YATR	2 cut(s)	107, 263
FaqI	GGGAC	1 cut(s)	18
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	3 cut(s)	53, 258, 330
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	3 cut(s)	53, 258, 330
FspBI	CTAG	2 cut(s)	71, 167
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	3 cut(s)	53, 258, 330
HaeII	RGCGCY	1 cut(s)	230
HaeIII	GGCC	2 cut(s)	257, 266
HapII	CCGG	1 cut(s)	276
HgaI	GACGC	2 cut(s)	15, 199
HhaI	GCGC	1 cut(s)	229
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	3 cut(s)	113, 127, 275
Hpy166II	GTNNAC	2 cut(s)	76, 214
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	2 cut(s)	76, 214
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	3 cut(s)	13, 37, 248
HpyCH4V	TGCA	1 cut(s)	329
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 263, 272, 276
HspAI	GCGC	1 cut(s)	227
KroI	GCCGGC	1 cut(s)	275
KroNI	GCCGGC	1 cut(s)	277
Kzo9I	GATC	1 cut(s)	111
LpnPI	CCDG	7 cut(s)	35, 84, 106, 108, 111, 280, 289
Lsp1109I	GCAGC	1 cut(s)	39
MabI	ACCWGGT	1 cut(s)	97
MaeI	CTAG	2 cut(s)	71, 167
MaeIII	GTNAC	4 cut(s)	63, 101, 118, 248
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MlsI	TGGCCA	1 cut(s)	266
MluNI	TGGCCA	1 cut(s)	266
MnlI	CCTC	4 cut(s)	41, 139, 143, 182
Mox20I	TGGCCA	1 cut(s)	266
MroNI	GCCGGC	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	266
MseI	TTAA	1 cut(s)	87
Msp20I	TGGCCA	1 cut(s)	266
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	99
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	4 cut(s)	52, 263, 272, 276
NaeI	GCCGGC	1 cut(s)	277
NdeII	GATC	1 cut(s)	111
NgoMIV	GCCGGC	1 cut(s)	275
NlaIV	GGNNCC	1 cut(s)	127
NmuCI	GTSAC	3 cut(s)	63, 101, 248
NspV	TTCGAA	2 cut(s)	16, 187
PcsI	WCGNNNNNNNCGW	1 cut(s)	13
PdiI	GCCGGC	1 cut(s)	277
PkrI	GCNGC	3 cut(s)	54, 259, 331
PshBI	ATTAAT	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	1 cut(s)	127
PstI	CTGCAG	1 cut(s)	331
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	3 cut(s)	53, 258, 330
Sau3AI	GATC	1 cut(s)	111
ScrFI	CCNGG	1 cut(s)	99
SetI	ASST	2 cut(s)	103, 174
SexAI	ACCWGGT	1 cut(s)	97
SfcI	CTRYAG	1 cut(s)	327
SfiI	GGCCNNNNNGGCC	1 cut(s)	263
SfuI	TTCGAA	2 cut(s)	16, 187
SpeI	ACTAGT	1 cut(s)	70
SsiI	CCGC	2 cut(s)	208, 258
SspMI	CTAG	2 cut(s)	71, 167
StyD4I	CCNGG	1 cut(s)	97
TaaI	ACNGT	3 cut(s)	13, 37, 248
TaqI	TCGA	2 cut(s)	16, 187
TauI	GCSGC	1 cut(s)	260
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TseFI	GTSAC	3 cut(s)	63, 101, 248
TseI	GCWGC	2 cut(s)	52, 329
Tsp45I	GTSAC	3 cut(s)	63, 101, 248
VspI	ATTAAT	1 cut(s)	87
XbaI	TCTAGA	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	2 cut(s)	71, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.