Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010575

Physical Location & Seq

Genomic Coordinates Forward (+)

523218 .. 523748

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g00940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAAACGCGATACCGCACCAGATCCCTTAAAGATCCACGTAACAGATGCCTCCCTCACTCGACTCAACTCCGACAACTATAATCTTGCCCTAACTATCGCCCTTGAAAACCGAAACGAGTATTTCCAGATCTATTACGACAACGCACAAGTCGTCGCCCGTTACAACAACAAGTCTGCTGTGGCTAGTGTCGATACTTTACACCAACTCGAAAAGAGTACTACTCTTCTGACGCCATTGTTGAAACTGCAGCATGGGAATAACAGTACTGATATTGTTGATGATGATGCAGCTGGGAATTATCACTACGACATTGTCGTCAAGCTCTATCTTCCAAAGACGTACAAGTCCATCTCCATTATTATGAGGAGGAACGATTGGCAAAGCGGTATACATCTCTACGTATGTGACTTGAAAGTTCCTGCAGCTTTGAACATTCGTGGATCAAACTATGTTCATGCTTTCAATACTACCGAGTGCGCGCCAATTAAGATGAATACCACCGAAATATATAGTTACAATCATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

177

Amino Acids

20.04

Weight (kDa)

6.64

Isoelectric Point (pI)

32.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010575)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00900 FvH4_6g00940 FvH4_6g00941
rosa_chinensis	RchiOBHm_Chr3g0448391 RchiOBHm_Chr3g0448401
rosa_laevigata	RLG00000025916
rosa_multiflora	Rmu_co8385315.1_g000001 Rmu_sc0008044.1_g000003
rosa_rugosa	Rorug02G0612000 Rorug02G0612100
rosa_samantha	Rh3AG011200 Rh3AG011300 Rh3AG011400 Rh3BG011000 Rh3BG011100 Rh3CG010700 Rh3CG010800 Rh3DG011400 Rh3DG011500
rosa_wichuraiana	Rw3G000880 Rw3G000890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	317, 346
AccI	GTMKAC	1 cut(s)	391
AccII	CGCG	2 cut(s)	9, 482
AciI	CCGC	2 cut(s)	15, 387
AclWI	GGATC	3 cut(s)	17, 28, 451
AcyI	GRCGYC	1 cut(s)	233
AfaI	GTAC	3 cut(s)	220, 268, 344
AgsI	TTSAA	5 cut(s)	107, 244, 415, 433, 466
AluBI	AGCT	3 cut(s)	293, 325, 428
AluI	AGCT	3 cut(s)	293, 325, 428
AlwI	GGATC	3 cut(s)	17, 28, 451
ApeKI	GCWGC	3 cut(s)	250, 290, 425
AspLEI	GCGC	2 cut(s)	482, 484
BbvI	GCAGC	3 cut(s)	262, 302, 437
BccI	CCATC	1 cut(s)	359
BfaI	CTAG	1 cut(s)	186
BfmI	CTRYAG	2 cut(s)	248, 423
BglII	AGATCT	1 cut(s)	129
BisI	GCNGC	3 cut(s)	251, 291, 426
BlsI	GCNGC	3 cut(s)	252, 292, 427
BmcAI	AGTACT	2 cut(s)	220, 268
BmsI	GCATC	2 cut(s)	37, 277
BplI	GAGNNNNNCTC	2 cut(s)	208, 240
BsaAI	YACGTR	2 cut(s)	40, 403
BsaHI	GRCGYC	1 cut(s)	233
BsePI	GCGCGC	1 cut(s)	480
BseRI	GAGGAG	1 cut(s)	382
BseXI	GCAGC	3 cut(s)	262, 302, 437
BseYI	CCCAGC	1 cut(s)	293
Bsh1236I	CGCG	2 cut(s)	9, 482
Bsp143I	GATC	4 cut(s)	22, 33, 129, 443
BspACI	CCGC	2 cut(s)	15, 387
BspFNI	CGCG	2 cut(s)	9, 482
BspMAI	CTGCAG	2 cut(s)	252, 427
BspPI	GGATC	3 cut(s)	17, 28, 451
BssHII	GCGCGC	1 cut(s)	480
BssMI	GATC	4 cut(s)	22, 33, 129, 443
BssNAI	GTATAC	1 cut(s)	392
BssNI	GRCGYC	1 cut(s)	233
Bst1107I	GTATAC	1 cut(s)	392
Bst4CI	ACNGT	1 cut(s)	266
Bst6I	CTCTTC	1 cut(s)	231
BstACI	GRCGYC	1 cut(s)	233
BstBAI	YACGTR	2 cut(s)	40, 403
BstC8I	GCNNGC	1 cut(s)	482
BstFNI	CGCG	2 cut(s)	9, 482
BstHHI	GCGC	2 cut(s)	482, 484
BstKTI	GATC	4 cut(s)	25, 36, 132, 446
BstMBI	GATC	4 cut(s)	22, 33, 129, 443
BstSFI	CTRYAG	2 cut(s)	248, 423
BstSNI	TACGTA	1 cut(s)	403
BstUI	CGCG	2 cut(s)	9, 482
BstV1I	GCAGC	3 cut(s)	262, 302, 437
BstX2I	RGATCY	3 cut(s)	22, 33, 129
BstYI	RGATCY	3 cut(s)	22, 33, 129
BstZ17I	GTATAC	1 cut(s)	392
Cac8I	GCNNGC	1 cut(s)	482
CfoI	GCGC	2 cut(s)	482, 484
CseI	GACGC	1 cut(s)	241
Csp6I	GTAC	3 cut(s)	219, 267, 343
CviAII	CATG	3 cut(s)	254, 458, 524
CviJI	RGCY	4 cut(s)	185, 293, 325, 428
CviKI_1	RGCY	4 cut(s)	185, 293, 325, 428
CviQI	GTAC	3 cut(s)	219, 267, 343
DpnI	GATC	4 cut(s)	24, 35, 131, 445
DpnII	GATC	4 cut(s)	22, 33, 129, 443
DrdI	GACNNNNNNGTC	2 cut(s)	317, 346
DseDI	GACNNNNNNGTC	2 cut(s)	317, 346
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco105I	TACGTA	1 cut(s)	403
FaeI	CATG	3 cut(s)	257, 461, 527
FatI	CATG	3 cut(s)	253, 457, 523
FblI	GTMKAC	1 cut(s)	391
Fnu4HI	GCNGC	3 cut(s)	251, 291, 426
Fsp4HI	GCNGC	3 cut(s)	251, 291, 426
FspBI	CTAG	1 cut(s)	186
GlaI	GCGC	2 cut(s)	481, 483
GluI	GCNGC	3 cut(s)	251, 291, 426
GsaI	CCCAGC	1 cut(s)	297
HgaI	GACGC	1 cut(s)	241
HhaI	GCGC	2 cut(s)	482, 484
Hin1I	GRCGYC	1 cut(s)	233
Hin1II	CATG	3 cut(s)	257, 461, 527
Hin6I	GCGC	2 cut(s)	480, 482
HinP1I	GCGC	2 cut(s)	480, 482
HinfI	GANTC	1 cut(s)	63
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188I	TCNGA	2 cut(s)	73, 231
Hpy188III	TCNNGA	1 cut(s)	127
Hpy8I	GTNNAC	1 cut(s)	392
Hpy99I	CGWCG	1 cut(s)	158
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	3 cut(s)	39, 341, 402
HpyCH4V	TGCA	3 cut(s)	250, 290, 425
HpySE526I	ACGT	3 cut(s)	39, 341, 402
Hsp92I	GRCGYC	1 cut(s)	233
Hsp92II	CATG	3 cut(s)	257, 461, 527
HspAI	GCGC	2 cut(s)	480, 482
Kzo9I	GATC	4 cut(s)	22, 33, 129, 443
LpnPI	CCDG	4 cut(s)	33, 140, 279, 435
Lsp1109I	GCAGC	3 cut(s)	262, 302, 437
LweI	GCATC	2 cut(s)	37, 277
MaeI	CTAG	1 cut(s)	186
MaeII	ACGT	3 cut(s)	39, 341, 402
MaeIII	GTNAC	4 cut(s)	40, 161, 407, 515
MalI	GATC	4 cut(s)	24, 35, 131, 445
MboI	GATC	4 cut(s)	22, 33, 129, 443
MboII	GAAGA	2 cut(s)	218, 323
MflI	RGATCY	3 cut(s)	22, 33, 129
MluCI	AATT	2 cut(s)	298, 486
MlyI	GAGTC	1 cut(s)	57
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	4 cut(s)	61, 65, 360, 363
MseI	TTAA	3 cut(s)	29, 489, 529
MslI	CAYNNNNRTG	1 cut(s)	362
MspA1I	CMGCKG	1 cut(s)	293
MvnI	CGCG	2 cut(s)	9, 482
NdeII	GATC	4 cut(s)	22, 33, 129, 443
NlaIII	CATG	3 cut(s)	257, 461, 527
NmuCI	GTSAC	1 cut(s)	407
PauI	GCGCGC	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	2 cut(s)	150, 315
PflFI	GACNNNGTC	1 cut(s)	314
PkrI	GCNGC	3 cut(s)	252, 292, 427
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
Ppu21I	YACGTR	2 cut(s)	40, 403
PspFI	CCCAGC	1 cut(s)	293
PstI	CTGCAG	2 cut(s)	252, 427
PsuI	RGATCY	3 cut(s)	22, 33, 129
PsyI	GACNNNGTC	1 cut(s)	314
PteI	GCGCGC	1 cut(s)	480
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	3 cut(s)	220, 268, 344
RsaNI	GTAC	3 cut(s)	219, 267, 343
RseI	CAYNNNNRTG	1 cut(s)	362
SaqAI	TTAA	3 cut(s)	29, 489, 529
SatI	GCNGC	3 cut(s)	251, 291, 426
Sau3AI	GATC	4 cut(s)	22, 33, 129, 443
ScaI	AGTACT	2 cut(s)	220, 268
SchI	GAGTC	1 cut(s)	57
SetI	ASST	6 cut(s)	42, 295, 327, 344, 405, 430
SfaNI	GCATC	2 cut(s)	37, 277
SfcI	CTRYAG	2 cut(s)	248, 423
SmiMI	CAYNNNNRTG	1 cut(s)	362
SnaBI	TACGTA	1 cut(s)	403
Sse9I	AATT	2 cut(s)	298, 486
SsiI	CCGC	2 cut(s)	15, 387
SspMI	CTAG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	3 cut(s)	42, 344, 405
TaqI	TCGA	3 cut(s)	61, 192, 210
TasI	AATT	2 cut(s)	298, 486
TatI	WGTACW	2 cut(s)	218, 266
Tru1I	TTAA	3 cut(s)	29, 489, 529
Tru9I	TTAA	3 cut(s)	29, 489, 529
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	3 cut(s)	250, 290, 425
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	3 cut(s)	17, 446, 509
Tth111I	GACNNNGTC	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	391
XspI	CTAG	1 cut(s)	186
ZrmI	AGTACT	2 cut(s)	220, 268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.