Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0010575

Physical Location & Seq

Genomic Coordinates Forward (+)

661305 .. 662069

Gene Structure 765 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G000880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCACGCACGAGTGGATGCCAGAGAAGATCTAACACGGCTGATCAAGATTCCGATCGGGAAACCGAGCACTGCCGCTGTTGGATTATCTTACTCGTGGTATTCCTTTTCCTTTTACTGGTGTTTTATTTCGTCGAGAGCATAATCAGAAGCGGGCCACCAGATGACATAAAGATCACTGTAACTGATGCCTCCCTCACCGAGTTCAACATAACCAGCTCCAACAACTACAATCTCGACCTCAACATCACCCTTCGAAATCCCAACAAGGATTTTGGCATCTACTACCGGTACGCGGCTCTAGTCGTCGCAGACTACCGCAAGACGTCTGCTATGGCCAGCATTGCTAACTTTCACCAACCAGCAAAGAATACGACTCTTCTGACGCCGTCGTTTAAACTGCAGCGGGATAATATTACTGGCGATGCAGCTGCGTCAGGGAAAGGGAATTACTACGACATTGTCGTTACCCTCTATCTTCCAAAGAAGTACAAGTCCGTCACCTGGTGGAAGAACGATTGGCTAAGCAGTATACAACTCTACGCATGTGACTTGAAGGTTCCTTTGAACAATGGATCAAAATCAGTCGATGCTTTCAATACTACCCACTGCACGCCAAATAATGATTACCACCGTTGGTTTTTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0010150 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0090693 GO:0098542 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

216

Amino Acids

24.69

Weight (kDa)

8.53

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010575)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00900 FvH4_6g00940 FvH4_6g00941
rosa_chinensis	RchiOBHm_Chr3g0448391 RchiOBHm_Chr3g0448401
rosa_laevigata	RLG00000025916
rosa_multiflora	Rmu_co8385315.1_g000001 Rmu_sc0008044.1_g000003
rosa_rugosa	Rorug02G0612000 Rorug02G0612100
rosa_samantha	Rh3AG011200 Rh3AG011300 Rh3AG011400 Rh3BG011000 Rh3BG011100 Rh3CG010700 Rh3CG010800 Rh3DG011400 Rh3DG011500
rosa_wichuraiana	Rw3G000880 Rw3G000890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	329
AccI	GTMKAC	1 cut(s)	532
AccII	CGCG	1 cut(s)	296
AciI	CCGC	5 cut(s)	76, 153, 296, 319, 406
AclWI	GGATC	1 cut(s)	583
AcoI	YGGCCR	1 cut(s)	336
AcyI	GRCGYC	2 cut(s)	326, 386
AdeI	CACNNNGTG	1 cut(s)	507
AfaI	GTAC	2 cut(s)	293, 491
AfiI	CCNNNNNNNGG	3 cut(s)	118, 295, 504
AgeI	ACCGGT	1 cut(s)	288
AgsI	TTSAA	4 cut(s)	208, 556, 568, 598
AjnI	CCWGG	1 cut(s)	503
AluBI	AGCT	2 cut(s)	219, 431
AluI	AGCT	2 cut(s)	219, 431
Alw21I	GWGCWC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	583
AoxI	GGCC	2 cut(s)	155, 336
ApeKI	GCWGC	3 cut(s)	403, 428, 431
AsiGI	ACCGGT	1 cut(s)	288
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	4 cut(s)	190, 241, 347, 493
AsuII	TTCGAA	1 cut(s)	256
BalI	TGGCCA	1 cut(s)	338
BauI	CACGAG	2 cut(s)	10, 95
Bbv12I	GWGCWC	1 cut(s)	72
BbvI	GCAGC	3 cut(s)	415, 418, 440
BceAI	ACGGC	2 cut(s)	54, 373
BcgI	CGANNNNNNTGC	2 cut(s)	413, 447
BciT130I	CCWGG	1 cut(s)	505
BclI	TGATCA	1 cut(s)	43
BfaI	CTAG	1 cut(s)	302
BfmI	CTRYAG	1 cut(s)	401
BglII	AGATCT	1 cut(s)	29
BisI	GCNGC	5 cut(s)	76, 297, 404, 429, 432
BlpI	GCTNAGC	1 cut(s)	524
BlsI	GCNGC	5 cut(s)	77, 298, 405, 430, 433
Bme1390I	CCNGG	1 cut(s)	505
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	561
BmrFI	CCNGG	1 cut(s)	505
BmsI	GCATC	5 cut(s)	8, 178, 288, 415, 580
Bpu1102I	GCTNAGC	1 cut(s)	524
Bpu14I	TTCGAA	1 cut(s)	256
BsaBI	GATNNNNATC	2 cut(s)	54, 580
BsaHI	GRCGYC	2 cut(s)	326, 386
BsaWI	WCCGGW	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 295, 504
Bse118I	RCCGGY	1 cut(s)	288
Bse1I	ACTGG	2 cut(s)	123, 424
Bse3DI	GCAATG	1 cut(s)	342
Bse8I	GATNNNNATC	2 cut(s)	54, 580
BseBI	CCWGG	1 cut(s)	505
BseGI	GGATG	1 cut(s)	23
BseJI	GATNNNNATC	2 cut(s)	54, 580
BseLI	CCNNNNNNNGG	3 cut(s)	118, 295, 504
BseMI	GCAATG	1 cut(s)	342
BseNI	ACTGG	2 cut(s)	123, 424
BseXI	GCAGC	3 cut(s)	415, 418, 440
BsgI	GTGCAG	1 cut(s)	595
Bsh1236I	CGCG	1 cut(s)	296
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	2 cut(s)	157, 338
BshTI	ACCGGT	1 cut(s)	288
BsiEI	CGRYCG	1 cut(s)	58
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	289
BslI	CCNNNNNNNGG	3 cut(s)	118, 295, 504
BsnI	GGCC	2 cut(s)	157, 338
Bsp119I	TTCGAA	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	5 cut(s)	29, 43, 55, 174, 575
Bsp1720I	GCTNAGC	1 cut(s)	524
BspACI	CCGC	5 cut(s)	76, 153, 296, 319, 406
BspANI	GGCC	2 cut(s)	157, 338
BspFNI	CGCG	1 cut(s)	296
BspLI	GGNNCC	1 cut(s)	561
BspMAI	CTGCAG	1 cut(s)	405
BspPI	GGATC	1 cut(s)	583
BspT104I	TTCGAA	1 cut(s)	256
BsrDI	GCAATG	1 cut(s)	342
BsrFI	RCCGGY	1 cut(s)	288
BsrI	ACTGG	2 cut(s)	123, 424
BssAI	RCCGGY	1 cut(s)	288
BssMI	GATC	5 cut(s)	29, 43, 55, 174, 575
BssNAI	GTATAC	1 cut(s)	533
BssNI	GRCGYC	2 cut(s)	326, 386
BssSI	CACGAG	2 cut(s)	10, 95
Bst1107I	GTATAC	1 cut(s)	533
Bst2BI	CACGAG	2 cut(s)	10, 95
Bst2UI	CCWGG	1 cut(s)	505
Bst4CI	ACNGT	2 cut(s)	181, 635
Bst6I	CTCTTC	1 cut(s)	384
BstACI	GRCGYC	2 cut(s)	326, 386
BstBI	TTCGAA	1 cut(s)	256
BstC8I	GCNNGC	4 cut(s)	7, 155, 340, 614
BstDEI	CTNAG	1 cut(s)	524
BstF5I	GGATG	1 cut(s)	23
BstFNI	CGCG	1 cut(s)	296
BstKTI	GATC	5 cut(s)	32, 46, 58, 177, 578
BstMBI	GATC	5 cut(s)	29, 43, 55, 174, 575
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	1 cut(s)	505
BstNSI	RCATGY	1 cut(s)	549
BstSCI	CCNGG	1 cut(s)	503
BstSFI	CTRYAG	1 cut(s)	401
BstUI	CGCG	1 cut(s)	296
BstV1I	GCAGC	3 cut(s)	415, 418, 440
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
BstZ17I	GTATAC	1 cut(s)	533
BsuRI	GGCC	2 cut(s)	157, 338
BtgZI	GCGATG	1 cut(s)	438
BtsCI	GGATG	1 cut(s)	23
BtsI	GCAGTG	2 cut(s)	70, 607
BtsIMutI	CAGTG	3 cut(s)	70, 177, 607
Cac8I	GCNNGC	4 cut(s)	7, 155, 340, 614
Cfr10I	RCCGGY	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	155
CseI	GACGC	2 cut(s)	394, 423
CsiI	ACCWGGT	1 cut(s)	503
Csp6I	GTAC	2 cut(s)	292, 490
CspAI	ACCGGT	1 cut(s)	288
CviAII	CATG	1 cut(s)	546
CviJI	RGCY	7 cut(s)	41, 157, 219, 299, 338, 431, 523
CviKI_1	RGCY	7 cut(s)	41, 157, 219, 299, 338, 431, 523
CviQI	GTAC	2 cut(s)	292, 490
DdeI	CTNAG	1 cut(s)	524
DpnI	GATC	5 cut(s)	31, 45, 57, 176, 577
DpnII	GATC	5 cut(s)	29, 43, 55, 174, 575
DraI	TTTAAA	1 cut(s)	397
DraIII	CACNNNGTG	1 cut(s)	507
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	503
FaeI	CATG	1 cut(s)	549
FaiI	YATR	6 cut(s)	143, 170, 212, 335, 533, 547
FatI	CATG	1 cut(s)	545
FauI	CCCGC	2 cut(s)	146, 399
FbaI	TGATCA	1 cut(s)	43
FblI	GTMKAC	1 cut(s)	532
Fnu4HI	GCNGC	5 cut(s)	76, 297, 404, 429, 432
FokI	GGATG	1 cut(s)	30
Fsp4HI	GCNGC	5 cut(s)	76, 297, 404, 429, 432
FspBI	CTAG	1 cut(s)	302
GluI	GCNGC	5 cut(s)	76, 297, 404, 429, 432
HaeIII	GGCC	2 cut(s)	157, 338
HapII	CCGG	1 cut(s)	289
HgaI	GACGC	2 cut(s)	394, 423
Hin1I	GRCGYC	2 cut(s)	326, 386
Hin1II	CATG	1 cut(s)	549
HinfI	GANTC	2 cut(s)	50, 376
HpaII	CCGG	1 cut(s)	289
HphI	GGTGA	4 cut(s)	190, 241, 347, 493
Hpy166II	GTNNAC	1 cut(s)	533
Hpy188I	TCNGA	3 cut(s)	55, 149, 384
Hpy188III	TCNNGA	4 cut(s)	47, 59, 136, 236
Hpy8I	GTNNAC	1 cut(s)	533
Hpy99I	CGWCG	3 cut(s)	137, 311, 394
HpyAV	CCTTC	2 cut(s)	263, 550
HpyCH4III	ACNGT	2 cut(s)	181, 635
HpyCH4IV	ACGT	1 cut(s)	326
HpyCH4V	TGCA	3 cut(s)	403, 428, 612
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	1 cut(s)	524
HpySE526I	ACGT	1 cut(s)	326
Hsp92I	GRCGYC	2 cut(s)	326, 386
Hsp92II	CATG	1 cut(s)	549
Ksp22I	TGATCA	1 cut(s)	43
Kzo9I	GATC	5 cut(s)	29, 43, 55, 174, 575
LmnI	GCTCC	1 cut(s)	224
Lsp1109I	GCAGC	3 cut(s)	415, 418, 440
LweI	GCATC	5 cut(s)	8, 178, 288, 415, 580
MabI	ACCWGGT	1 cut(s)	503
MaeI	CTAG	1 cut(s)	302
MaeII	ACGT	1 cut(s)	326
MaeIII	GTNAC	4 cut(s)	181, 466, 499, 548
MalI	GATC	5 cut(s)	31, 45, 57, 176, 577
MboI	GATC	5 cut(s)	29, 43, 55, 174, 575
MboII	GAAGA	4 cut(s)	39, 371, 470, 523
MflI	RGATCY	1 cut(s)	29
MhlI	GDGCHC	1 cut(s)	72
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	1 cut(s)	448
MluNI	TGGCCA	1 cut(s)	338
MlyI	GAGTC	1 cut(s)	370
MmeI	TCCRAC	2 cut(s)	62, 246
MnlI	CCTC	4 cut(s)	202, 206, 251, 482
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	2 cut(s)	396, 649
Msp20I	TGGCCA	1 cut(s)	338
MspA1I	CMGCKG	3 cut(s)	78, 406, 431
MspI	CCGG	1 cut(s)	289
MspR9I	CCNGG	1 cut(s)	505
MssI	GTTTAAAC	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	505
MvnI	CGCG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	344
NdeII	GATC	5 cut(s)	29, 43, 55, 174, 575
NlaIII	CATG	1 cut(s)	549
NlaIV	GGNNCC	1 cut(s)	561
NmuCI	GTSAC	2 cut(s)	499, 548
NspI	RCATGY	1 cut(s)	549
NspV	TTCGAA	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	1 cut(s)	462
PfeI	GAWTC	1 cut(s)	50
PflFI	GACNNNGTC	2 cut(s)	388, 461
PinAI	ACCGGT	1 cut(s)	288
PkrI	GCNGC	5 cut(s)	77, 298, 405, 430, 433
Ple19I	CGATCG	1 cut(s)	58
PleI	GAGTC	1 cut(s)	370
PmeI	GTTTAAAC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	370
Psp6I	CCWGG	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	503
PspN4I	GGNNCC	1 cut(s)	561
PspPI	GGNCC	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	405
PsuI	RGATCY	1 cut(s)	29
PsyI	GACNNNGTC	2 cut(s)	388, 461
PvuI	CGATCG	1 cut(s)	58
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	2 cut(s)	293, 491
RsaNI	GTAC	2 cut(s)	292, 490
SaqAI	TTAA	2 cut(s)	396, 649
SatI	GCNGC	5 cut(s)	76, 297, 404, 429, 432
Sau3AI	GATC	5 cut(s)	29, 43, 55, 174, 575
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	1 cut(s)	370
ScrFI	CCNGG	1 cut(s)	505
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	6 cut(s)	221, 243, 329, 433, 506, 561
SexAI	ACCWGGT	1 cut(s)	503
SfaNI	GCATC	5 cut(s)	8, 178, 288, 415, 580
SfcI	CTRYAG	1 cut(s)	401
SfuI	TTCGAA	1 cut(s)	256
Sse9I	AATT	1 cut(s)	448
SsiI	CCGC	5 cut(s)	76, 153, 296, 319, 406
SspI	AATATT	1 cut(s)	415
SspMI	CTAG	1 cut(s)	302
StyD4I	CCNGG	1 cut(s)	503
TaaI	ACNGT	2 cut(s)	181, 635
TaiI	ACGT	1 cut(s)	329
TaqI	TCGA	4 cut(s)	135, 237, 256, 588
TasI	AATT	1 cut(s)	448
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	2 cut(s)	78, 299
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	2 cut(s)	396, 649
Tru9I	TTAA	2 cut(s)	396, 649
TscAI	CASTG	3 cut(s)	77, 184, 614
TseFI	GTSAC	2 cut(s)	499, 548
TseI	GCWGC	3 cut(s)	403, 428, 431
Tsp45I	GTSAC	2 cut(s)	499, 548
TspGWI	ACGGA	1 cut(s)	487
TspRI	CASTG	3 cut(s)	77, 184, 614
Tth111I	GACNNNGTC	2 cut(s)	388, 461
XceI	RCATGY	1 cut(s)	549
XmiI	GTMKAC	1 cut(s)	532
XspI	CTAG	1 cut(s)	302
ZraI	GACGTC	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.