Rh3AG011400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0010575
Physical Location & Seq
Forward (+)
692120 .. 692365
246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG011400.1

Sequence Viewer

Length: 246 bp
ATGCAGCTGGGTCGGGAAAAGGGAATTACTACGTACGACATTGTCGTCAAGCTCTATCTTCCAAAGTGGTACAAGTCCATCTCCAAGAAGAGGGACAATTGGCAAAGCAGTATACATATGTACACATGTGAATTGAAGGTTCCTTTGAACAATGGATCAAAATCTGTTGATGCTTTCAATACTACCGAGTGCGCGCCAAGAACCGTTGATTTTGGTTTTCGCTATAGCCGGTGTAAGATAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.46

Weight (kDa)

9.55

Isoelectric Point (pI)

24.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 44
AccI GTMKAC 1 cut(s) 112
AccII CGCG 1 cut(s) 194
AclWI GGATC 1 cut(s) 163
AfaI GTAC 3 cut(s) 35, 71, 122
AfiI CCNNNNNNNGG 1 cut(s) 90
AflIII ACRYGT 1 cut(s) 125
AgsI TTSAA 3 cut(s) 136, 148, 178
AluBI AGCT 2 cut(s) 7, 52
AluI AGCT 2 cut(s) 7, 52
AlwI GGATC 1 cut(s) 163
ApeKI GCWGC 1 cut(s) 4
AspLEI GCGC 2 cut(s) 194, 196
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 86
BcgI CGANNNNNNTGC 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 223
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmiI GGNNCC 1 cut(s) 141
BmsI GCATC 1 cut(s) 160
BsaAI YACGTR 1 cut(s) 33
BsaBI GATNNNNATC 1 cut(s) 160
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse118I RCCGGY 1 cut(s) 228
Bse8I GATNNNNATC 1 cut(s) 160
BseJI GATNNNNATC 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 90
BsePI GCGCGC 1 cut(s) 192
BseXI GCAGC 1 cut(s) 16
BseYI CCCAGC 1 cut(s) 7
Bsh1236I CGCG 1 cut(s) 194
BsiSI CCGG 1 cut(s) 229
BsiWI CGTACG 1 cut(s) 33
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 90
BsmFI GGGAC 1 cut(s) 107
Bsp1407I TGTACA 1 cut(s) 120
Bsp143I GATC 1 cut(s) 155
BspFNI CGCG 1 cut(s) 194
BspLI GGNNCC 1 cut(s) 141
BspPI GGATC 1 cut(s) 163
BsrFI RCCGGY 1 cut(s) 228
BsrGI TGTACA 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 228
BssHII GCGCGC 1 cut(s) 192
BssMI GATC 1 cut(s) 155
BssNAI GTATAC 1 cut(s) 113
Bst1107I GTATAC 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 205
Bst6I CTCTTC 1 cut(s) 83
BstAUI TGTACA 1 cut(s) 120
BstBAI YACGTR 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 194
BstFNI CGCG 1 cut(s) 194
BstHHI GCGC 2 cut(s) 194, 196
BstKTI GATC 1 cut(s) 158
BstMBI GATC 1 cut(s) 155
BstNSI RCATGY 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 223
BstSNI TACGTA 1 cut(s) 33
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 1 cut(s) 16
BstZ17I GTATAC 1 cut(s) 113
Cac8I GCNNGC 1 cut(s) 194
CfoI GCGC 2 cut(s) 194, 196
Cfr10I RCCGGY 1 cut(s) 228
Csp6I GTAC 3 cut(s) 34, 70, 121
CviAII CATG 1 cut(s) 126
CviJI RGCY 3 cut(s) 7, 52, 228
CviKI_1 RGCY 3 cut(s) 7, 52, 228
CviQI GTAC 3 cut(s) 34, 70, 121
DpnI GATC 1 cut(s) 157
DpnII GATC 1 cut(s) 155
DrdI GACNNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 44
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Eco105I TACGTA 1 cut(s) 33
FaeI CATG 1 cut(s) 129
FaiI YATR 5 cut(s) 113, 117, 119, 127, 225
FaqI GGGAC 1 cut(s) 107
FatI CATG 1 cut(s) 125
FauNDI CATATG 1 cut(s) 117
FblI GTMKAC 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 5
GlaI GCGC 2 cut(s) 193, 195
GluI GCNGC 1 cut(s) 5
GsaI CCCAGC 1 cut(s) 11
HapII CCGG 1 cut(s) 229
HhaI GCGC 2 cut(s) 194, 196
Hin1II CATG 1 cut(s) 129
Hin6I GCGC 2 cut(s) 192, 194
HinP1I GCGC 2 cut(s) 192, 194
HpaII CCGG 1 cut(s) 229
Hpy166II GTNNAC 2 cut(s) 113, 123
Hpy188III TCNNGA 1 cut(s) 14
Hpy8I GTNNAC 2 cut(s) 113, 123
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 1 cut(s) 4
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 1 cut(s) 129
HspAI GCGC 2 cut(s) 192, 194
Kzo9I GATC 1 cut(s) 155
LpnPI CCDG 1 cut(s) 242
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 160
MaeII ACGT 1 cut(s) 32
MalI GATC 1 cut(s) 157
MboI GATC 1 cut(s) 155
MboII GAAGA 2 cut(s) 50, 100
MfeI CAATTG 1 cut(s) 97
MluCI AATT 3 cut(s) 24, 97, 131
MnlI CCTC 1 cut(s) 84
MspA1I CMGCKG 1 cut(s) 7
MspI CCGG 1 cut(s) 229
MunI CAATTG 1 cut(s) 97
MvnI CGCG 1 cut(s) 194
NdeI CATATG 1 cut(s) 117
NdeII GATC 1 cut(s) 155
NlaIII CATG 1 cut(s) 129
NlaIV GGNNCC 1 cut(s) 141
NspI RCATGY 1 cut(s) 129
PauI GCGCGC 1 cut(s) 192
PciI ACATGT 1 cut(s) 125
PcsI WCGNNNNNNNCGW 1 cut(s) 42
Pfl23II CGTACG 1 cut(s) 33
PflFI GACNNNGTC 1 cut(s) 41
PkrI GCNGC 1 cut(s) 6
Ppu21I YACGTR 1 cut(s) 33
PscI ACATGT 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 7
PspLI CGTACG 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 141
PsyI GACNNNGTC 1 cut(s) 41
PteI GCGCGC 1 cut(s) 192
PvuII CAGCTG 1 cut(s) 7
RsaI GTAC 3 cut(s) 35, 71, 122
RsaNI GTAC 3 cut(s) 34, 70, 121
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 1 cut(s) 155
SetI ASST 4 cut(s) 9, 35, 54, 141
SfaNI GCATC 1 cut(s) 160
SfcI CTRYAG 1 cut(s) 223
SnaBI TACGTA 1 cut(s) 33
Sse9I AATT 3 cut(s) 24, 97, 131
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 1 cut(s) 35
TasI AATT 3 cut(s) 24, 97, 131
TatI WGTACW 1 cut(s) 120
TseI GCWGC 1 cut(s) 4
Tth111I GACNNNGTC 1 cut(s) 41
XceI RCATGY 1 cut(s) 129
XmiI GTMKAC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.