Rh3BG011000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0010575
Physical Location & Seq
Forward (+)
691744 .. 691989
246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG011000.1

Sequence Viewer

Length: 246 bp
ATGGGTCCATCAGGCATGTGCATCTGCAGTTCGATCTTATGCTTTTTAACCATAACCGGCACCGCGCTCCTCATCGCATACACTGCATACTCGATTGTAAGGGGTGACCAACTCCGCACCCCACCACGTCCCTTAAAGATACACGTAACTGATGCCTCCCTCAACTACACCACCCTTGATCTGGCCCTCAATATCACCCTTGAAAACCCCAACAAGTATTTCCACACTATTACGACGACTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.88

Weight (kDa)

7.74

Isoelectric Point (pI)

22.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AccII CGCG 1 cut(s) 65
AciI CCGC 2 cut(s) 63, 115
AfiI CCNNNNNNNGG 1 cut(s) 181
AflIII ACRYGT 1 cut(s) 142
AgsI TTSAA 1 cut(s) 203
AjiI CACGTC 1 cut(s) 128
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AoxI GGCC 1 cut(s) 183
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 2 cut(s) 5, 184
AsuHPI GGTGA 2 cut(s) 116, 187
AvaII GGWCC 1 cut(s) 5
BanI GGYRCC 1 cut(s) 59
BccI CCATC 1 cut(s) 16
BfmI CTRYAG 2 cut(s) 25, 242
Bme18I GGWCC 1 cut(s) 5
BmgBI CACGTC 1 cut(s) 128
BmgT120I GGNCC 2 cut(s) 5, 184
BmiI GGNNCC 2 cut(s) 6, 61
BmsI GCATC 2 cut(s) 30, 142
BsaAI YACGTR 1 cut(s) 145
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse118I RCCGGY 1 cut(s) 56
BseLI CCNNNNNNNGG 1 cut(s) 181
BseRI GAGGAG 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 65
BshFI GGCC 1 cut(s) 185
BshNI GGYRCC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 57
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 181
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 1 cut(s) 185
Bsp143I GATC 2 cut(s) 33, 178
BspACI CCGC 2 cut(s) 63, 115
BspANI GGCC 1 cut(s) 185
BspFNI CGCG 1 cut(s) 65
BspLI GGNNCC 2 cut(s) 6, 61
BspMAI CTGCAG 1 cut(s) 29
BspT107I GGYRCC 1 cut(s) 59
BsrFI RCCGGY 1 cut(s) 56
BssAI RCCGGY 1 cut(s) 56
BssMI GATC 2 cut(s) 33, 178
BstAPI GCANNNNNTGC 1 cut(s) 83
BstBAI YACGTR 1 cut(s) 145
BstEII GGTNACC 1 cut(s) 104
BstFNI CGCG 1 cut(s) 65
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 2 cut(s) 36, 181
BstMBI GATC 2 cut(s) 33, 178
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNSI RCATGY 1 cut(s) 19
BstPI GGTNACC 1 cut(s) 104
BstSFI CTRYAG 2 cut(s) 25, 242
BstUI CGCG 1 cut(s) 65
BsuRI GGCC 1 cut(s) 185
BtgZI GCGATG 1 cut(s) 58
BtrI CACGTC 1 cut(s) 128
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 81
CfoI GCGC 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 2 cut(s) 5, 184
CviAII CATG 1 cut(s) 16
CviJI RGCY 1 cut(s) 185
CviKI_1 RGCY 1 cut(s) 185
DpnI GATC 2 cut(s) 35, 180
DpnII GATC 2 cut(s) 33, 178
Eco47I GGWCC 1 cut(s) 5
Eco91I GGTNACC 1 cut(s) 104
EcoO65I GGTNACC 1 cut(s) 104
FaeI CATG 1 cut(s) 19
FaiI YATR 6 cut(s) 17, 40, 53, 79, 88, 244
FaqI GGGAC 1 cut(s) 114
FatI CATG 1 cut(s) 15
GlaI GCGC 1 cut(s) 66
HaeIII GGCC 1 cut(s) 185
HapII CCGG 1 cut(s) 57
HhaI GCGC 1 cut(s) 67
Hin1II CATG 1 cut(s) 19
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HinfI GANTC 1 cut(s) 238
HpaII CCGG 1 cut(s) 57
HphI GGTGA 2 cut(s) 116, 187
Hpy99I CGWCG 1 cut(s) 238
HpyCH4IV ACGT 2 cut(s) 127, 144
HpyCH4V TGCA 3 cut(s) 21, 27, 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpySE526I ACGT 2 cut(s) 127, 144
Hsp92II CATG 1 cut(s) 19
HspAI GCGC 1 cut(s) 65
Kzo9I GATC 2 cut(s) 33, 178
LmnI GCTCC 1 cut(s) 72
LpnPI CCDG 2 cut(s) 70, 167
LweI GCATC 2 cut(s) 30, 142
MaeII ACGT 2 cut(s) 127, 144
MaeIII GTNAC 2 cut(s) 104, 145
MalI GATC 2 cut(s) 35, 180
MboI GATC 2 cut(s) 33, 178
MlyI GAGTC 1 cut(s) 232
MnlI CCTC 4 cut(s) 80, 166, 170, 197
MseI TTAA 2 cut(s) 47, 134
MspI CCGG 1 cut(s) 57
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 83
NdeII GATC 2 cut(s) 33, 178
NlaIII CATG 1 cut(s) 19
NlaIV GGNNCC 2 cut(s) 6, 61
NmuCI GTSAC 1 cut(s) 104
NspI RCATGY 1 cut(s) 19
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
Ppu21I YACGTR 1 cut(s) 145
PspEI GGTNACC 1 cut(s) 104
PspN4I GGNNCC 2 cut(s) 6, 61
PspPI GGNCC 2 cut(s) 5, 184
PstI CTGCAG 1 cut(s) 29
SaqAI TTAA 2 cut(s) 47, 134
Sau3AI GATC 2 cut(s) 33, 178
Sau96I GGNCC 2 cut(s) 5, 184
SchI GAGTC 1 cut(s) 232
SetI ASST 2 cut(s) 130, 147
SfaNI GCATC 2 cut(s) 30, 142
SfcI CTRYAG 2 cut(s) 25, 242
SinI GGWCC 1 cut(s) 5
SsiI CCGC 2 cut(s) 63, 115
TaiI ACGT 2 cut(s) 130, 147
TaqI TCGA 2 cut(s) 32, 92
Tru1I TTAA 2 cut(s) 47, 134
Tru9I TTAA 2 cut(s) 47, 134
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 104
TspRI CASTG 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 5
XceI RCATGY 1 cut(s) 19
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.