Rw3G000890

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0010575
Physical Location & Seq
Forward (+)
673020 .. 673613
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G000890.1

Sequence Viewer

Length: 594 bp
ATGTGCATCTGCAGTTCGATCTCATGCTTTTTAATAACCGTAATCGCGCTCCTCATCGCTTTCACTACATACTCGATTGTAGGGGCTGAACAACTCCGCACCCCACCAGGTCCCTTAAAGATACACGTAACTGATGCCTCCCTCAACTACACCACCCTTGATCTGGCCCTCAATATCACCCTTGAAAACCCCAACAAGTATTTCCACATCTATTACGACAACTCTATAGTCATCGCTGGTTACAGCAACAAAACCTCTGCTATAGCGAGTGTCGCCGACTTTCACCAACTCGAAAATAATACGACTCTTCTGACGCCGTCGTTGAAAATGCAGCGGGGTGATAGTACTGACGATGCAACTGGGTCGGGAAAAGGGAATTACTACGACATTGTCGTCAAGCTCTATCTTCCAAAGTGGTACAAGTCCATCTCCAAGAAGAGGGACAATTGGCAAAGCAGTATACATATGTACACATGTGAATTGAAGGTTCCTTTGAACAATGGATCAAAATCTGTTGATGCTTTCAATACTACCGAGTGCGCGCCAAGAACCGTTGATTTTGGTTTTCGCTATAGCTGGCGTAAGTTAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

197

Amino Acids

22.09

Weight (kDa)

8.52

Isoelectric Point (pI)

27.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 392
AccI GTMKAC 1 cut(s) 460
AccII CGCG 2 cut(s) 47, 542
AciI CCGC 2 cut(s) 97, 334
AclWI GGATC 1 cut(s) 511
AcyI GRCGYC 1 cut(s) 314
AfaI GTAC 3 cut(s) 346, 419, 470
AfiI CCNNNNNNNGG 2 cut(s) 163, 438
AflIII ACRYGT 2 cut(s) 124, 473
AgsI TTSAA 5 cut(s) 185, 325, 484, 496, 526
AjnI CCWGG 1 cut(s) 106
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AluBI AGCT 2 cut(s) 400, 576
AluI AGCT 2 cut(s) 400, 576
AlwI GGATC 1 cut(s) 511
AoxI GGCC 1 cut(s) 165
ApeKI GCWGC 1 cut(s) 331
AspLEI GCGC 3 cut(s) 49, 542, 544
AspS9I GGNCC 2 cut(s) 110, 166
AsuHPI GGTGA 3 cut(s) 169, 275, 350
AvaII GGWCC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 343
BccI CCATC 1 cut(s) 434
BceAI ACGGC 1 cut(s) 301
BcgI CGANNNNNNTGC 2 cut(s) 345, 379
BciT130I CCWGG 1 cut(s) 108
BfmI CTRYAG 4 cut(s) 10, 225, 261, 571
BisI GCNGC 1 cut(s) 332
BlsI GCNGC 1 cut(s) 333
BmcAI AGTACT 1 cut(s) 346
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 110
BmgT120I GGNCC 2 cut(s) 110, 166
BmiI GGNNCC 2 cut(s) 112, 489
BmrFI CCNGG 1 cut(s) 108
BmrI ACTGGG 1 cut(s) 369
BmsI GCATC 4 cut(s) 15, 124, 343, 508
BmuI ACTGGG 1 cut(s) 369
BsaAI YACGTR 1 cut(s) 127
BsaBI GATNNNNATC 1 cut(s) 508
BsaHI GRCGYC 1 cut(s) 314
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 438
Bse1I ACTGG 1 cut(s) 364
Bse8I GATNNNNATC 1 cut(s) 508
BseBI CCWGG 1 cut(s) 108
BseJI GATNNNNATC 1 cut(s) 508
BseLI CCNNNNNNNGG 2 cut(s) 163, 438
BseNI ACTGG 1 cut(s) 364
BsePI GCGCGC 1 cut(s) 540
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 1 cut(s) 343
Bsh1236I CGCG 2 cut(s) 47, 542
BshFI GGCC 1 cut(s) 167
BslFI GGGAC 2 cut(s) 96, 455
BslI CCNNNNNNNGG 2 cut(s) 163, 438
BsmFI GGGAC 2 cut(s) 96, 455
BsnI GGCC 1 cut(s) 167
Bsp1407I TGTACA 1 cut(s) 468
Bsp143I GATC 3 cut(s) 18, 160, 503
BspACI CCGC 2 cut(s) 97, 334
BspANI GGCC 1 cut(s) 167
BspFNI CGCG 2 cut(s) 47, 542
BspLI GGNNCC 2 cut(s) 112, 489
BspMAI CTGCAG 1 cut(s) 14
BspPI GGATC 1 cut(s) 511
BsrGI TGTACA 1 cut(s) 468
BsrI ACTGG 1 cut(s) 364
BssHII GCGCGC 1 cut(s) 540
BssMI GATC 3 cut(s) 18, 160, 503
BssNAI GTATAC 1 cut(s) 461
BssNI GRCGYC 1 cut(s) 314
Bst1107I GTATAC 1 cut(s) 461
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 2 cut(s) 40, 553
Bst6I CTCTTC 2 cut(s) 312, 431
BstACI GRCGYC 1 cut(s) 314
BstAUI TGTACA 1 cut(s) 468
BstBAI YACGTR 1 cut(s) 127
BstC8I GCNNGC 2 cut(s) 542, 578
BstFNI CGCG 2 cut(s) 47, 542
BstHHI GCGC 3 cut(s) 49, 542, 544
BstKTI GATC 3 cut(s) 21, 163, 506
BstMBI GATC 3 cut(s) 18, 160, 503
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNI CCWGG 1 cut(s) 108
BstNSI RCATGY 1 cut(s) 477
BstSCI CCNGG 1 cut(s) 106
BstSFI CTRYAG 4 cut(s) 10, 225, 261, 571
BstUI CGCG 2 cut(s) 47, 542
BstV1I GCAGC 1 cut(s) 343
BstZ17I GTATAC 1 cut(s) 461
BsuRI GGCC 1 cut(s) 167
BtgZI GCGATG 2 cut(s) 40, 217
Cac8I GCNNGC 2 cut(s) 542, 578
CfoI GCGC 3 cut(s) 49, 542, 544
Cfr13I GGNCC 2 cut(s) 110, 166
CseI GACGC 1 cut(s) 322
CsiI ACCWGGT 1 cut(s) 106
Csp6I GTAC 3 cut(s) 345, 418, 469
CviAII CATG 2 cut(s) 24, 474
CviJI RGCY 4 cut(s) 86, 167, 400, 576
CviKI_1 RGCY 4 cut(s) 86, 167, 400, 576
CviQI GTAC 3 cut(s) 345, 418, 469
DpnI GATC 3 cut(s) 20, 162, 505
DpnII GATC 3 cut(s) 18, 160, 503
DrdI GACNNNNNNGTC 1 cut(s) 392
DseDI GACNNNNNNGTC 1 cut(s) 392
Eam1104I CTCTTC 2 cut(s) 312, 431
EarI CTCTTC 2 cut(s) 312, 431
Eco47I GGWCC 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 106
FaeI CATG 2 cut(s) 27, 477
FaiI YATR 9 cut(s) 25, 70, 227, 263, 461, 465, 467, 475, 573
FaqI GGGAC 2 cut(s) 96, 455
FatI CATG 2 cut(s) 23, 473
FauI CCCGC 1 cut(s) 327
FauNDI CATATG 1 cut(s) 465
FblI GTMKAC 1 cut(s) 460
Fnu4HI GCNGC 1 cut(s) 332
Fsp4HI GCNGC 1 cut(s) 332
GlaI GCGC 3 cut(s) 48, 541, 543
GluI GCNGC 1 cut(s) 332
HaeIII GGCC 1 cut(s) 167
HgaI GACGC 1 cut(s) 322
HhaI GCGC 3 cut(s) 49, 542, 544
Hin1I GRCGYC 1 cut(s) 314
Hin1II CATG 2 cut(s) 27, 477
Hin6I GCGC 3 cut(s) 47, 540, 542
HinP1I GCGC 3 cut(s) 47, 540, 542
HinfI GANTC 1 cut(s) 304
HphI GGTGA 3 cut(s) 169, 275, 350
Hpy166II GTNNAC 2 cut(s) 461, 471
Hpy188I TCNGA 1 cut(s) 312
Hpy188III TCNNGA 1 cut(s) 366
Hpy8I GTNNAC 2 cut(s) 461, 471
Hpy99I CGWCG 1 cut(s) 322
HpyAV CCTTC 1 cut(s) 478
HpyCH4III ACNGT 2 cut(s) 40, 553
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 4 cut(s) 6, 12, 331, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpySE526I ACGT 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 314
Hsp92II CATG 2 cut(s) 27, 477
HspAI GCGC 3 cut(s) 47, 540, 542
Kzo9I GATC 3 cut(s) 18, 160, 503
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 6 cut(s) 93, 120, 149, 222, 345, 562
Lsp1109I GCAGC 1 cut(s) 343
LweI GCATC 4 cut(s) 15, 124, 343, 508
MabI ACCWGGT 1 cut(s) 106
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 2 cut(s) 127, 239
MalI GATC 3 cut(s) 20, 162, 505
MboI GATC 3 cut(s) 18, 160, 503
MboII GAAGA 3 cut(s) 299, 398, 448
MfeI CAATTG 1 cut(s) 445
MluCI AATT 3 cut(s) 376, 445, 479
MlyI GAGTC 1 cut(s) 298
MnlI CCTC 6 cut(s) 62, 148, 152, 179, 265, 432
MseI TTAA 2 cut(s) 32, 116
MspA1I CMGCKG 1 cut(s) 334
MspR9I CCNGG 1 cut(s) 108
MunI CAATTG 1 cut(s) 445
MvaI CCWGG 1 cut(s) 108
MvnI CGCG 2 cut(s) 47, 542
MwoI GCNNNNNNNGC 1 cut(s) 272
NdeI CATATG 1 cut(s) 465
NdeII GATC 3 cut(s) 18, 160, 503
NlaIII CATG 2 cut(s) 27, 477
NlaIV GGNNCC 2 cut(s) 112, 489
NspI RCATGY 1 cut(s) 477
PauI GCGCGC 1 cut(s) 540
PciI ACATGT 1 cut(s) 473
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PflFI GACNNNGTC 2 cut(s) 316, 389
PkrI GCNGC 1 cut(s) 333
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
Ppu21I YACGTR 1 cut(s) 127
PpuMI RGGWCCY 1 cut(s) 110
PscI ACATGT 1 cut(s) 473
Psp5II RGGWCCY 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 112, 489
PspPI GGNCC 2 cut(s) 110, 166
PspPPI RGGWCCY 1 cut(s) 110
PstI CTGCAG 1 cut(s) 14
PsyI GACNNNGTC 2 cut(s) 316, 389
PteI GCGCGC 1 cut(s) 540
RsaI GTAC 3 cut(s) 346, 419, 470
RsaNI GTAC 3 cut(s) 345, 418, 469
SaqAI TTAA 2 cut(s) 32, 116
SatI GCNGC 1 cut(s) 332
Sau3AI GATC 3 cut(s) 18, 160, 503
Sau96I GGNCC 2 cut(s) 110, 166
ScaI AGTACT 1 cut(s) 346
SchI GAGTC 1 cut(s) 298
ScrFI CCNGG 1 cut(s) 108
SetI ASST 6 cut(s) 112, 129, 257, 402, 489, 578
SexAI ACCWGGT 1 cut(s) 106
SfaNI GCATC 4 cut(s) 15, 124, 343, 508
SfcI CTRYAG 4 cut(s) 10, 225, 261, 571
SinI GGWCC 1 cut(s) 110
Sse9I AATT 3 cut(s) 376, 445, 479
SsiI CCGC 2 cut(s) 97, 334
StyD4I CCNGG 1 cut(s) 106
TaaI ACNGT 2 cut(s) 40, 553
TaiI ACGT 1 cut(s) 129
TaqI TCGA 3 cut(s) 17, 74, 291
TasI AATT 3 cut(s) 376, 445, 479
TatI WGTACW 2 cut(s) 344, 468
Tru1I TTAA 2 cut(s) 32, 116
Tru9I TTAA 2 cut(s) 32, 116
TseI GCWGC 1 cut(s) 331
Tth111I GACNNNGTC 2 cut(s) 316, 389
VpaK11BI GGWCC 1 cut(s) 110
XceI RCATGY 1 cut(s) 477
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 460
ZrmI AGTACT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.