Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010575

Physical Location & Seq

Genomic Coordinates Reverse (-)

72891850 .. 72892891

Gene Structure 1042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0612100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTCCGAAGGGAGGGATATATATAGGAGCCAAGTAAGGCAATATCAAACAACATTGCCACCAGGACGGGATAAGGAGCTTAAAATATTTTTCTACAGGCAAAGCCGCTTTTGGCATGATGATCCTGCAAACTATACTCATGATGAATGTATCTTGCAAGGTCGCAGAGCAGTTTTTGTCACTCACGATTTCTTAACAAGTATGAACATGCGCTGGTTACTTCTTAGTGCAGGTCTTCCATTAGAAGAACAGGCACCGATTCTTGAGGAAATAATAACTCAATTTGCTCGAATGGTTGTCCCCGAGCTGTCTATTACTGTGGTAATACTGCACATCAGCGTTCGCTCATTAGGTAGTGTCGACTATCAGGATATCATTGATTTTGTTGCAAGAGAACCGATCAATGTTAATTTACATGCTTCCCCTATTCGTGTCACTCCTACTGCGCATGCTTCTACGGTGTCCTTGCTAGGAACATATATGTCACTTTTTACTATTCCTGCATCTAGATCCTCGATTGAAGGTTTGAAGAAAGTGAGATTCGATAGTTTGGAAGAAGATGTTATCCGTGAGACTCCAACATGTGCTATATGTATCAAGGACTTTGTAGAATGTGTTGATGAACTGATTACTAGTTTACCCTGCGCTCACCATTATCATGTAGATTGCATTGTCCAGTGGCTGAAGAGAGATCACACTTGTCCCTTGTGCCGATACCGAATGCCACCTGCACGCATGGACGAGGATACGGACGGGGACAGGGACGGGGATGCAGTTGAGCCATCAAATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

264

Amino Acids

30.23

Weight (kDa)

5.35

Isoelectric Point (pI)

57.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	194 - 238	4e-11	Ring finger domain
zf-C3HC4	PF00097	195 - 237	6.4e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	212 - 238	8.3e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010575)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00900 FvH4_6g00940 FvH4_6g00941
rosa_chinensis	RchiOBHm_Chr3g0448391 RchiOBHm_Chr3g0448401
rosa_laevigata	RLG00000025916
rosa_multiflora	Rmu_co8385315.1_g000001 Rmu_sc0008044.1_g000003
rosa_rugosa	Rorug02G0612000 Rorug02G0612100
rosa_samantha	Rh3AG011200 Rh3AG011300 Rh3AG011400 Rh3BG011000 Rh3BG011100 Rh3CG010700 Rh3CG010800 Rh3DG011400 Rh3DG011500
rosa_wichuraiana	Rw3G000880 Rw3G000890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	736
Acc16I	TGCGCA	1 cut(s)	447
Acc36I	ACCTGC	2 cut(s)	221, 736
AccB1I	GGYRCC	1 cut(s)	253
AccI	GTMKAC	1 cut(s)	360
AciI	CCGC	1 cut(s)	106
AclWI	GGATC	2 cut(s)	116, 504
AcuI	CTGAAG	1 cut(s)	704
AfiI	CCNNNNNNNGG	1 cut(s)	12
AflIII	ACRYGT	1 cut(s)	581
AgsI	TTSAA	2 cut(s)	521, 529
AhlI	ACTAGT	1 cut(s)	632
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	2 cut(s)	79, 307
AluI	AGCT	2 cut(s)	79, 307
Alw26I	GTCTC	1 cut(s)	566
AlwI	GGATC	2 cut(s)	116, 504
AlwNI	CAGNNNCTG	1 cut(s)	682
Ama87I	CYCGRG	1 cut(s)	302
AspLEI	GCGC	3 cut(s)	213, 448, 647
AsuHPI	GGTGA	1 cut(s)	641
AvaI	CYCGRG	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	253
BbsI	GAAGAC	1 cut(s)	227
BccI	CCATC	1 cut(s)	790
BciT130I	CCWGG	1 cut(s)	63
BciVI	GTATCC	1 cut(s)	739
BcoDI	GTCTC	1 cut(s)	566
BcuI	ACTAGT	1 cut(s)	632
BfaI	CTAG	3 cut(s)	470, 507, 633
BfmI	CTRYAG	1 cut(s)	94
BfuAI	ACCTGC	2 cut(s)	221, 736
BfuI	GTATCC	1 cut(s)	739
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
Bme1390I	CCNGG	1 cut(s)	63
BmeT110I	CYCGRG	1 cut(s)	302
BmiI	GGNNCC	2 cut(s)	29, 255
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	2 cut(s)	512, 760
BpiI	GAAGAC	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse1I	ACTGG	1 cut(s)	676
Bse3DI	GCAATG	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	775
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseMI	GCAATG	1 cut(s)	53
BseNI	ACTGG	1 cut(s)	676
BsgI	GTGCAG	3 cut(s)	249, 314, 714
BshNI	GGYRCC	1 cut(s)	253
BsiHKCI	CYCGRG	1 cut(s)	302
BslFI	GGGAC	4 cut(s)	284, 687, 770, 776
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmAI	GTCTC	1 cut(s)	566
BsmFI	GGGAC	4 cut(s)	284, 687, 770, 776
BsmI	GAATGC	1 cut(s)	726
BsoBI	CYCGRG	1 cut(s)	302
Bsp143I	GATC	4 cut(s)	121, 399, 509, 691
BspACI	CCGC	1 cut(s)	106
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	2 cut(s)	29, 255
BspMI	ACCTGC	2 cut(s)	221, 736
BspPI	GGATC	2 cut(s)	116, 504
BspT107I	GGYRCC	1 cut(s)	253
BsrDI	GCAATG	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	676
BssMI	GATC	4 cut(s)	121, 399, 509, 691
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	2 cut(s)	319, 460
Bst6I	CTCTTC	1 cut(s)	680
BstC8I	GCNNGC	2 cut(s)	450, 733
BstDEI	CTNAG	1 cut(s)	224
BstF5I	GGATG	1 cut(s)	775
BstHHI	GCGC	3 cut(s)	213, 448, 647
BstKTI	GATC	4 cut(s)	124, 402, 512, 694
BstMAI	GTCTC	1 cut(s)	566
BstMBI	GATC	4 cut(s)	121, 399, 509, 691
BstNI	CCWGG	1 cut(s)	63
BstNSI	RCATGY	4 cut(s)	211, 419, 452, 585
BstSCI	CCNGG	1 cut(s)	61
BstSFI	CTRYAG	1 cut(s)	94
BstV2I	GAAGAC	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	509
BsuI	GTATCC	1 cut(s)	739
BtsCI	GGATG	1 cut(s)	775
BtsIMutI	CAGTG	1 cut(s)	683
BveI	ACCTGC	2 cut(s)	221, 736
Cac8I	GCNNGC	2 cut(s)	450, 733
CaiI	CAGNNNCTG	1 cut(s)	682
CciI	TCATGA	1 cut(s)	139
CfoI	GCGC	3 cut(s)	213, 448, 647
CviAII	CATG	8 cut(s)	116, 140, 208, 416, 449, 582, 659, 736
CviJI	RGCY	6 cut(s)	30, 79, 105, 307, 682, 781
CviKI_1	RGCY	6 cut(s)	30, 79, 105, 307, 682, 781
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	4 cut(s)	123, 401, 511, 693
DpnII	GATC	4 cut(s)	121, 399, 509, 691
Eam1104I	CTCTTC	1 cut(s)	680
EarI	CTCTTC	1 cut(s)	680
Eco32I	GATATC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	704
Eco88I	CYCGRG	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	61
EcoRV	GATATC	1 cut(s)	373
FaeI	CATG	8 cut(s)	119, 143, 211, 419, 452, 585, 662, 739
FaqI	GGGAC	4 cut(s)	284, 687, 770, 776
FatI	CATG	8 cut(s)	115, 139, 207, 415, 448, 581, 658, 735
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	1 cut(s)	106
FokI	GGATG	1 cut(s)	782
Fsp4HI	GCNGC	1 cut(s)	106
FspBI	CTAG	3 cut(s)	470, 507, 633
FspI	TGCGCA	1 cut(s)	447
GlaI	GCGC	3 cut(s)	212, 447, 646
GluI	GCNGC	1 cut(s)	106
HhaI	GCGC	3 cut(s)	213, 448, 647
Hin1II	CATG	8 cut(s)	119, 143, 211, 419, 452, 585, 662, 739
Hin6I	GCGC	3 cut(s)	211, 446, 645
HinP1I	GCGC	3 cut(s)	211, 446, 645
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	3 cut(s)	259, 540, 574
HphI	GGTGA	1 cut(s)	641
Hpy166II	GTNNAC	2 cut(s)	361, 638
Hpy188I	TCNGA	1 cut(s)	7
Hpy188III	TCNNGA	5 cut(s)	140, 185, 263, 368, 507
Hpy8I	GTNNAC	2 cut(s)	361, 638
HpyAV	CCTTC	1 cut(s)	515
HpyCH4III	ACNGT	2 cut(s)	319, 460
HpyCH4V	TGCA	9 cut(s)	128, 157, 230, 331, 389, 503, 669, 731, 773
HpyF3I	CTNAG	1 cut(s)	224
Hsp92II	CATG	8 cut(s)	119, 143, 211, 419, 452, 585, 662, 739
HspAI	GCGC	3 cut(s)	211, 446, 645
Kzo9I	GATC	4 cut(s)	121, 399, 509, 691
LmnI	GCTCC	2 cut(s)	27, 76
LweI	GCATC	2 cut(s)	512, 760
MaeI	CTAG	3 cut(s)	470, 507, 633
MaeIII	GTNAC	4 cut(s)	178, 216, 433, 483
MalI	GATC	4 cut(s)	123, 401, 511, 693
MboI	GATC	4 cut(s)	121, 399, 509, 691
MboII	GAAGA	6 cut(s)	227, 257, 541, 566, 569, 697
MflI	RGATCY	1 cut(s)	509
MluCI	AATT	2 cut(s)	281, 409
MlyI	GAGTC	1 cut(s)	568
MmeI	TCCRAC	1 cut(s)	602
MnlI	CCTC	4 cut(s)	6, 259, 523, 736
MseI	TTAA	3 cut(s)	81, 194, 408
MslI	CAYNNNNRTG	1 cut(s)	657
MspR9I	CCNGG	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	726
MvaI	CCWGG	1 cut(s)	63
NdeII	GATC	4 cut(s)	121, 399, 509, 691
NlaIII	CATG	8 cut(s)	119, 143, 211, 419, 452, 585, 662, 739
NlaIV	GGNNCC	2 cut(s)	29, 255
NmuCI	GTSAC	3 cut(s)	178, 433, 483
NsbI	TGCGCA	1 cut(s)	447
NspI	RCATGY	4 cut(s)	211, 419, 452, 585
PaeI	GCATGC	1 cut(s)	452
PagI	TCATGA	1 cut(s)	139
PaqCI	CACCTGC	1 cut(s)	736
PciI	ACATGT	1 cut(s)	581
PctI	GAATGC	1 cut(s)	726
PfeI	GAWTC	2 cut(s)	259, 540
PkrI	GCNGC	1 cut(s)	107
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
PscI	ACATGT	1 cut(s)	581
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	2 cut(s)	29, 255
PstNI	CAGNNNCTG	1 cut(s)	682
PsuI	RGATCY	1 cut(s)	509
RseI	CAYNNNNRTG	1 cut(s)	657
SalI	GTCGAC	1 cut(s)	359
SaqAI	TTAA	3 cut(s)	81, 194, 408
SatI	GCNGC	1 cut(s)	106
Sau3AI	GATC	4 cut(s)	121, 399, 509, 691
SchI	GAGTC	1 cut(s)	568
ScrFI	CCNGG	1 cut(s)	63
SetI	ASST	7 cut(s)	81, 163, 235, 309, 355, 526, 730
SfaNI	GCATC	2 cut(s)	512, 760
SfcI	CTRYAG	1 cut(s)	94
SmiMI	CAYNNNNRTG	1 cut(s)	657
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
SpeI	ACTAGT	1 cut(s)	632
SphI	GCATGC	1 cut(s)	452
Sse9I	AATT	2 cut(s)	281, 409
SsiI	CCGC	1 cut(s)	106
SspI	AATATT	1 cut(s)	87
SspMI	CTAG	3 cut(s)	470, 507, 633
StyD4I	CCNGG	1 cut(s)	61
TaaI	ACNGT	2 cut(s)	319, 460
TaqI	TCGA	4 cut(s)	289, 360, 515, 543
TasI	AATT	2 cut(s)	281, 409
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	2 cut(s)	259, 540
Tru1I	TTAA	3 cut(s)	81, 194, 408
Tru9I	TTAA	3 cut(s)	81, 194, 408
TscAI	CASTG	1 cut(s)	683
TseFI	GTSAC	3 cut(s)	178, 433, 483
Tsp45I	GTSAC	3 cut(s)	178, 433, 483
TspDTI	ATGAA	3 cut(s)	159, 218, 636
TspGWI	ACGGA	2 cut(s)	557, 764
TspRI	CASTG	1 cut(s)	683
XbaI	TCTAGA	1 cut(s)	506
XceI	RCATGY	4 cut(s)	211, 419, 452, 585
XmiI	GTMKAC	1 cut(s)	360
XspI	CTAG	3 cut(s)	470, 507, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.