Rmu_sc0008044.1_g000003

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008044.1
OG0010575
Physical Location & Seq
Reverse (-)
16792 .. 17385
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008044.1_g000003.1.cds

Sequence Viewer

Length: 594 bp
atgtgcatctgcagttcgatctcatgctttttaataaccgtaaccgcgctgatcatcgctttcactacatactcgattgtaagggctgaacaactccgcaccccaccaggtcccttaaagatacacgtaactgatgcctccctcaactacaccacccttgatctggccctcaatatcacccttgaaaaccccaacaagtatttccacatctattacgacgactctatagtcatcgctggttacagcaacaaaacctctgctatagcgagtgtcgccgactttcaccaactcgaaaataatacgactcttctgacgccgtcgttgaaaatgcatcggggtgatagtactgacgatgcaactgggtcgggaaaagggaattactacgacattgtcgtcaagctctatcttccaaagtggtacaagtccatctccaagaagagggacaattggcaaagcagtatacatatgtacacatgtgaattgaaggttcctttgaacaatggatcaaaatctgttgatgctttcaatactaccgagtgcgcgccaagaaccgttgattttggttttcgctatagctggcgtaagttagtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

197

Amino Acids

22.19

Weight (kDa)

8.52

Isoelectric Point (pI)

32.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 227, 392
AccI GTMKAC 1 cut(s) 460
AccII CGCG 2 cut(s) 47, 542
AciI CCGC 2 cut(s) 45, 97
AclWI GGATC 1 cut(s) 511
AcyI GRCGYC 1 cut(s) 314
AfaI GTAC 3 cut(s) 346, 419, 470
AfiI CCNNNNNNNGG 2 cut(s) 163, 438
AflIII ACRYGT 2 cut(s) 124, 473
AgsI TTSAA 5 cut(s) 185, 325, 484, 496, 526
AjnI CCWGG 1 cut(s) 106
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AluBI AGCT 2 cut(s) 400, 576
AluI AGCT 2 cut(s) 400, 576
AlwI GGATC 1 cut(s) 511
AoxI GGCC 1 cut(s) 165
AspLEI GCGC 3 cut(s) 49, 542, 544
AspS9I GGNCC 2 cut(s) 110, 166
AsuHPI GGTGA 3 cut(s) 169, 275, 350
AvaII GGWCC 1 cut(s) 110
BccI CCATC 1 cut(s) 434
BceAI ACGGC 1 cut(s) 301
BcgI CGANNNNNNTGC 2 cut(s) 345, 379
BciT130I CCWGG 1 cut(s) 108
BclI TGATCA 1 cut(s) 51
BfmI CTRYAG 4 cut(s) 10, 225, 261, 571
BmcAI AGTACT 1 cut(s) 346
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 110
BmgT120I GGNCC 2 cut(s) 110, 166
BmiI GGNNCC 2 cut(s) 112, 489
BmrFI CCNGG 1 cut(s) 108
BmrI ACTGGG 1 cut(s) 369
BmsI GCATC 5 cut(s) 15, 124, 340, 343, 508
BmuI ACTGGG 1 cut(s) 369
BsaAI YACGTR 1 cut(s) 127
BsaBI GATNNNNATC 1 cut(s) 508
BsaHI GRCGYC 1 cut(s) 314
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 438
Bse1I ACTGG 1 cut(s) 364
Bse8I GATNNNNATC 1 cut(s) 508
BseBI CCWGG 1 cut(s) 108
BseJI GATNNNNATC 1 cut(s) 508
BseLI CCNNNNNNNGG 2 cut(s) 163, 438
BseNI ACTGG 1 cut(s) 364
BsePI GCGCGC 1 cut(s) 540
Bsh1236I CGCG 2 cut(s) 47, 542
BshFI GGCC 1 cut(s) 167
BslFI GGGAC 2 cut(s) 96, 455
BslI CCNNNNNNNGG 2 cut(s) 163, 438
BsmFI GGGAC 2 cut(s) 96, 455
BsnI GGCC 1 cut(s) 167
Bsp1407I TGTACA 1 cut(s) 468
Bsp143I GATC 4 cut(s) 18, 51, 160, 503
BspACI CCGC 2 cut(s) 45, 97
BspANI GGCC 1 cut(s) 167
BspFNI CGCG 2 cut(s) 47, 542
BspLI GGNNCC 2 cut(s) 112, 489
BspMAI CTGCAG 1 cut(s) 14
BspPI GGATC 1 cut(s) 511
BsrGI TGTACA 1 cut(s) 468
BsrI ACTGG 1 cut(s) 364
BssHII GCGCGC 1 cut(s) 540
BssMI GATC 4 cut(s) 18, 51, 160, 503
BssNAI GTATAC 1 cut(s) 461
BssNI GRCGYC 1 cut(s) 314
Bst1107I GTATAC 1 cut(s) 461
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 2 cut(s) 40, 553
Bst6I CTCTTC 2 cut(s) 312, 431
BstACI GRCGYC 1 cut(s) 314
BstAUI TGTACA 1 cut(s) 468
BstBAI YACGTR 1 cut(s) 127
BstC8I GCNNGC 2 cut(s) 542, 578
BstFNI CGCG 2 cut(s) 47, 542
BstHHI GCGC 3 cut(s) 49, 542, 544
BstKTI GATC 4 cut(s) 21, 54, 163, 506
BstMBI GATC 4 cut(s) 18, 51, 160, 503
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNI CCWGG 1 cut(s) 108
BstNSI RCATGY 1 cut(s) 477
BstSCI CCNGG 1 cut(s) 106
BstSFI CTRYAG 4 cut(s) 10, 225, 261, 571
BstUI CGCG 2 cut(s) 47, 542
BstZ17I GTATAC 1 cut(s) 461
BsuRI GGCC 1 cut(s) 167
BtgZI GCGATG 2 cut(s) 40, 217
Cac8I GCNNGC 2 cut(s) 542, 578
CfoI GCGC 3 cut(s) 49, 542, 544
Cfr13I GGNCC 2 cut(s) 110, 166
CseI GACGC 1 cut(s) 322
CsiI ACCWGGT 1 cut(s) 106
Csp6I GTAC 3 cut(s) 345, 418, 469
CviAII CATG 2 cut(s) 24, 474
CviJI RGCY 4 cut(s) 86, 167, 400, 576
CviKI_1 RGCY 4 cut(s) 86, 167, 400, 576
CviQI GTAC 3 cut(s) 345, 418, 469
DpnI GATC 4 cut(s) 20, 53, 162, 505
DpnII GATC 4 cut(s) 18, 51, 160, 503
DrdI GACNNNNNNGTC 2 cut(s) 227, 392
DseDI GACNNNNNNGTC 2 cut(s) 227, 392
Eam1104I CTCTTC 2 cut(s) 312, 431
EarI CTCTTC 2 cut(s) 312, 431
Eco47I GGWCC 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 106
EcoT22I ATGCAT 1 cut(s) 333
FaeI CATG 2 cut(s) 27, 477
FaiI YATR 9 cut(s) 25, 70, 227, 263, 461, 465, 467, 475, 573
FaqI GGGAC 2 cut(s) 96, 455
FatI CATG 2 cut(s) 23, 473
FauNDI CATATG 1 cut(s) 465
FbaI TGATCA 1 cut(s) 51
FblI GTMKAC 1 cut(s) 460
GlaI GCGC 3 cut(s) 48, 541, 543
HaeIII GGCC 1 cut(s) 167
HgaI GACGC 1 cut(s) 322
HhaI GCGC 3 cut(s) 49, 542, 544
Hin1I GRCGYC 1 cut(s) 314
Hin1II CATG 2 cut(s) 27, 477
Hin6I GCGC 3 cut(s) 47, 540, 542
HinP1I GCGC 3 cut(s) 47, 540, 542
HinfI GANTC 2 cut(s) 221, 304
HphI GGTGA 3 cut(s) 169, 275, 350
Hpy166II GTNNAC 2 cut(s) 461, 471
Hpy188I TCNGA 1 cut(s) 312
Hpy188III TCNNGA 1 cut(s) 366
Hpy8I GTNNAC 2 cut(s) 461, 471
Hpy99I CGWCG 2 cut(s) 221, 322
HpyAV CCTTC 1 cut(s) 478
HpyCH4III ACNGT 2 cut(s) 40, 553
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 4 cut(s) 6, 12, 331, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpySE526I ACGT 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 314
Hsp92II CATG 2 cut(s) 27, 477
HspAI GCGC 3 cut(s) 47, 540, 542
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 4 cut(s) 18, 51, 160, 503
LpnPI CCDG 6 cut(s) 93, 120, 149, 222, 345, 562
LweI GCATC 5 cut(s) 15, 124, 340, 343, 508
MabI ACCWGGT 1 cut(s) 106
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 3 cut(s) 40, 127, 239
MalI GATC 4 cut(s) 20, 53, 162, 505
MboI GATC 4 cut(s) 18, 51, 160, 503
MboII GAAGA 3 cut(s) 299, 398, 448
MfeI CAATTG 1 cut(s) 445
MluCI AATT 3 cut(s) 376, 445, 479
MlyI GAGTC 2 cut(s) 215, 298
MnlI CCTC 5 cut(s) 148, 152, 179, 265, 432
Mph1103I ATGCAT 1 cut(s) 333
MseI TTAA 2 cut(s) 32, 116
MslI CAYNNNNRTG 1 cut(s) 336
MspR9I CCNGG 1 cut(s) 108
MunI CAATTG 1 cut(s) 445
MvaI CCWGG 1 cut(s) 108
MvnI CGCG 2 cut(s) 47, 542
MwoI GCNNNNNNNGC 1 cut(s) 272
NdeI CATATG 1 cut(s) 465
NdeII GATC 4 cut(s) 18, 51, 160, 503
NlaIII CATG 2 cut(s) 27, 477
NlaIV GGNNCC 2 cut(s) 112, 489
NsiI ATGCAT 1 cut(s) 333
NspI RCATGY 1 cut(s) 477
PauI GCGCGC 1 cut(s) 540
PciI ACATGT 1 cut(s) 473
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PflFI GACNNNGTC 2 cut(s) 316, 389
PleI GAGTC 2 cut(s) 215, 298
PpsI GAGTC 2 cut(s) 215, 298
Ppu21I YACGTR 1 cut(s) 127
PpuMI RGGWCCY 1 cut(s) 110
PscI ACATGT 1 cut(s) 473
Psp5II RGGWCCY 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 112, 489
PspPI GGNCC 2 cut(s) 110, 166
PspPPI RGGWCCY 1 cut(s) 110
PstI CTGCAG 1 cut(s) 14
PsyI GACNNNGTC 2 cut(s) 316, 389
PteI GCGCGC 1 cut(s) 540
RsaI GTAC 3 cut(s) 346, 419, 470
RsaNI GTAC 3 cut(s) 345, 418, 469
RseI CAYNNNNRTG 1 cut(s) 336
SaqAI TTAA 2 cut(s) 32, 116
Sau3AI GATC 4 cut(s) 18, 51, 160, 503
Sau96I GGNCC 2 cut(s) 110, 166
ScaI AGTACT 1 cut(s) 346
SchI GAGTC 2 cut(s) 215, 298
ScrFI CCNGG 1 cut(s) 108
SetI ASST 6 cut(s) 112, 129, 257, 402, 489, 578
SexAI ACCWGGT 1 cut(s) 106
SfaNI GCATC 5 cut(s) 15, 124, 340, 343, 508
SfcI CTRYAG 4 cut(s) 10, 225, 261, 571
SinI GGWCC 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 336
Sse9I AATT 3 cut(s) 376, 445, 479
SsiI CCGC 2 cut(s) 45, 97
StyD4I CCNGG 1 cut(s) 106
TaaI ACNGT 2 cut(s) 40, 553
TaiI ACGT 1 cut(s) 129
TaqI TCGA 3 cut(s) 17, 74, 291
TasI AATT 3 cut(s) 376, 445, 479
TatI WGTACW 2 cut(s) 344, 468
Tru1I TTAA 2 cut(s) 32, 116
Tru9I TTAA 2 cut(s) 32, 116
Tth111I GACNNNGTC 2 cut(s) 316, 389
VpaK11BI GGWCC 1 cut(s) 110
XceI RCATGY 1 cut(s) 477
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 460
ZrmI AGTACT 1 cut(s) 346
Zsp2I ATGCAT 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.