Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013691

Physical Location & Seq

Genomic Coordinates Forward (+)

2191936 .. 2192667

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g04001.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCTTACAATGACTACGGCAATCACAGATCAGGTTACTCCACCGGCAGGGTAGGAGCTTACACCGACCAATGGGGAAATCCAAGGCAAAGCGGTGTTGTTGAGCCAGTGAGAGGCTACGGCTATGCTGCTGATAACTCATGGCAGCGCAGGTCTTCCAGCCCCGTCAGAGGTGGCTATGGTTATGCTGACCAAGCCTCCAGGATTGCACCATCCAGTGGTGCAAATTGGCCTCAACAGCCCCATCAAGCTGGACACTACAGTGGCACTCCAGCAAGCTATAGTGACTATAATGACTACAGCAACAAGCCAAGTTACAAGCATAGTGGAAAGAGGGACAACTATGATGATCACTACCGCAAAAATGAAACTAGCAGCTATGGACCAGCTGTCAACATGATATCAAACCTGGCATCAAGCCGGGCTAAGCCAAGCCGCACGGCACATTCATCTGGTACACTCCCCGTTCGTGGGGATGGCAGGCTCACCATTCCAACAGATGACATGGAGAGGGCCTTGCACTACTTGAGGGAAAGTGCAAAGACTTCACCATGGCCACGAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

20.82

Weight (kDa)

9.54

Isoelectric Point (pI)

51.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04001
malus_domestica	MD12G1233400.v1.1
prunus_persica	Prupe.6G336600_v2.0.a1 Prupe.6G336700_v2.0.a1
pyrus_communis	pycom04g19290 pycom12g21590
rosa_chinensis	RchiOBHm_Chr3g0452591
rosa_laevigata	RLG00000025581
rosa_multiflora	Rmu_sc0000608.1_g000023 Rmu_sc0028732.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429630
rosa_rugosa	Rorug02G0641500 Rorug02G0641500
rosa_samantha	Rh3AG044100 Rh3BG046200 Rh3CG044900 Rh3DG045200
rosa_wichuraiana	Rw3G003420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	141
AccB7I	CCANNNNNTGG	1 cut(s)	218
AciI	CCGC	3 cut(s)	93, 358, 436
AcoI	YGGCCR	1 cut(s)	554
AfaI	GTAC	1 cut(s)	457
AfiI	CCNNNNNNNGG	7 cut(s)	48, 72, 113, 170, 218, 470, 471
AhdI	GACNNNNNGTC	1 cut(s)	389
AjnI	CCWGG	2 cut(s)	200, 408
AleI	CACNNNNGTG	1 cut(s)	261
AluBI	AGCT	5 cut(s)	59, 251, 279, 378, 389
AluI	AGCT	5 cut(s)	59, 251, 279, 378, 389
AoxI	GGCC	3 cut(s)	230, 513, 554
ApeKI	GCWGC	3 cut(s)	128, 145, 375
AspLEI	GCGC	1 cut(s)	150
AspS9I	GGNCC	2 cut(s)	383, 513
AsuC2I	CCSGG	1 cut(s)	422
AsuHPI	GGTGA	2 cut(s)	478, 540
AvaII	GGWCC	1 cut(s)	383
BalI	TGGCCA	1 cut(s)	556
BbsI	GAAGAC	1 cut(s)	147
BbvI	GCAGC	3 cut(s)	115, 157, 387
BccI	CCATC	3 cut(s)	220, 252, 470
BceAI	ACGGC	3 cut(s)	34, 136, 456
BciT130I	CCWGG	2 cut(s)	202, 410
BclI	TGATCA	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	422
BfaI	CTAG	1 cut(s)	372
BfmI	CTRYAG	3 cut(s)	259, 280, 298
BfuAI	ACCTGC	1 cut(s)	141
BisI	GCNGC	4 cut(s)	129, 146, 376, 436
BlpI	GCTNAGC	1 cut(s)	426
BlsI	GCNGC	4 cut(s)	130, 147, 377, 437
Bme1390I	CCNGG	3 cut(s)	202, 410, 422
Bme18I	GGWCC	1 cut(s)	383
BmeRI	GACNNNNNGTC	1 cut(s)	389
BmgT120I	GGNCC	2 cut(s)	383, 513
BmrFI	CCNGG	3 cut(s)	202, 410, 422
BmsI	GCATC	1 cut(s)	422
BpiI	GAAGAC	1 cut(s)	147
BpmI	CTGGAG	2 cut(s)	184, 255
Bpu1102I	GCTNAGC	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	547
BpuMI	CCSGG	1 cut(s)	422
BsaJI	CCNNGG	2 cut(s)	83, 551
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	7 cut(s)	48, 72, 113, 170, 218, 470, 471
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	2 cut(s)	107, 216
BseBI	CCWGG	2 cut(s)	202, 410
BseDI	CCNNGG	2 cut(s)	83, 551
BseGI	GGATG	2 cut(s)	212, 481
BseLI	CCNNNNNNNGG	7 cut(s)	48, 72, 113, 170, 218, 470, 471
BseNI	ACTGG	2 cut(s)	107, 216
BseXI	GCAGC	3 cut(s)	115, 157, 387
BshFI	GGCC	3 cut(s)	232, 515, 556
BsiSI	CCGG	2 cut(s)	45, 421
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	7 cut(s)	48, 72, 113, 170, 218, 470, 471
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	3 cut(s)	232, 515, 556
Bsp143I	GATC	2 cut(s)	29, 349
Bsp1720I	GCTNAGC	1 cut(s)	426
Bsp19I	CCATGG	1 cut(s)	551
BspACI	CCGC	3 cut(s)	93, 358, 436
BspANI	GGCC	3 cut(s)	232, 515, 556
BspMI	ACCTGC	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	2 cut(s)	107, 216
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	2 cut(s)	83, 551
BssMI	GATC	2 cut(s)	29, 349
BssT1I	CCWWGG	2 cut(s)	83, 551
Bst2UI	CCWGG	2 cut(s)	202, 410
Bst4CI	ACNGT	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	277, 482
BstDEI	CTNAG	1 cut(s)	426
BstDSI	CCRYGG	1 cut(s)	551
BstF5I	GGATG	2 cut(s)	212, 481
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	2 cut(s)	32, 352
BstMBI	GATC	2 cut(s)	29, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 238
BstNI	CCWGG	2 cut(s)	202, 410
BstSCI	CCNGG	3 cut(s)	200, 408, 420
BstSFI	CTRYAG	3 cut(s)	259, 280, 298
BstV1I	GCAGC	3 cut(s)	115, 157, 387
BstV2I	GAAGAC	1 cut(s)	147
BstXI	CCANNNNNNTGG	1 cut(s)	251
BsuRI	GGCC	3 cut(s)	232, 515, 556
BtgI	CCRYGG	1 cut(s)	551
BtsCI	GGATG	2 cut(s)	212, 481
BtsIMutI	CAGTG	3 cut(s)	114, 223, 268
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	2 cut(s)	277, 482
CfoI	GCGC	1 cut(s)	150
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	2 cut(s)	383, 513
Csp6I	GTAC	1 cut(s)	456
CspCI	CAANNNNNGTGG	2 cut(s)	307, 342
CviAII	CATG	4 cut(s)	141, 397, 505, 552
CviQI	GTAC	1 cut(s)	456
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	2 cut(s)	31, 351
DpnII	GATC	2 cut(s)	29, 349
DriI	GACNNNNNGTC	1 cut(s)	389
EaeI	YGGCCR	1 cut(s)	554
Eam1105I	GACNNNNNGTC	1 cut(s)	389
Eco130I	CCWWGG	2 cut(s)	83, 551
Eco32I	GATATC	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	383
EcoO109I	RGGNCCY	1 cut(s)	513
EcoRII	CCWGG	2 cut(s)	200, 408
EcoRV	GATATC	1 cut(s)	402
EcoT14I	CCWWGG	2 cut(s)	83, 551
ErhI	CCWWGG	2 cut(s)	83, 551
FaeI	CATG	4 cut(s)	144, 400, 508, 555
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	4 cut(s)	140, 396, 504, 551
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	4 cut(s)	129, 146, 376, 436
FokI	GGATG	2 cut(s)	199, 488
Fsp4HI	GCNGC	4 cut(s)	129, 146, 376, 436
FspBI	CTAG	1 cut(s)	372
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	4 cut(s)	129, 146, 376, 436
GsuI	CTGGAG	2 cut(s)	184, 255
HaeIII	GGCC	3 cut(s)	232, 515, 556
HapII	CCGG	2 cut(s)	45, 421
HhaI	GCGC	1 cut(s)	150
Hin1II	CATG	4 cut(s)	144, 400, 508, 555
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HpaII	CCGG	2 cut(s)	45, 421
HphI	GGTGA	2 cut(s)	478, 540
Hpy166II	GTNNAC	2 cut(s)	394, 458
Hpy188I	TCNGA	1 cut(s)	170
Hpy8I	GTNNAC	2 cut(s)	394, 458
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4V	TGCA	4 cut(s)	209, 224, 520, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 238
HpyF3I	CTNAG	1 cut(s)	426
Hsp92II	CATG	4 cut(s)	144, 400, 508, 555
HspAI	GCGC	1 cut(s)	148
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	2 cut(s)	29, 349
LmnI	GCTCC	1 cut(s)	56
Lsp1109I	GCAGC	3 cut(s)	115, 157, 387
LweI	GCATC	1 cut(s)	422
MaeI	CTAG	1 cut(s)	372
MaeIII	GTNAC	3 cut(s)	35, 284, 314
MalI	GATC	2 cut(s)	31, 351
MboI	GATC	2 cut(s)	29, 349
MboII	GAAGA	1 cut(s)	147
MlsI	TGGCCA	1 cut(s)	556
MluCI	AATT	1 cut(s)	226
MluNI	TGGCCA	1 cut(s)	556
MmeI	TCCRAC	1 cut(s)	518
MnlI	CCTC	7 cut(s)	107, 164, 208, 243, 327, 504, 522
Mox20I	TGGCCA	1 cut(s)	556
MscI	TGGCCA	1 cut(s)	556
MslI	CAYNNNNRTG	1 cut(s)	261
Msp20I	TGGCCA	1 cut(s)	556
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	2 cut(s)	45, 421
MspR9I	CCNGG	3 cut(s)	202, 410, 422
MvaI	CCWGG	2 cut(s)	202, 410
MwoI	GCNNNNNNNGC	2 cut(s)	194, 238
NciI	CCSGG	1 cut(s)	422
NcoI	CCATGG	1 cut(s)	551
NdeII	GATC	2 cut(s)	29, 349
NlaIII	CATG	4 cut(s)	144, 400, 508, 555
NmuCI	GTSAC	1 cut(s)	284
OliI	CACNNNNGTG	1 cut(s)	261
PflMI	CCANNNNNTGG	1 cut(s)	218
PfoI	TCCNGGA	1 cut(s)	200
PkrI	GCNGC	4 cut(s)	130, 147, 377, 437
Psp6I	CCWGG	2 cut(s)	200, 408
PspGI	CCWGG	2 cut(s)	200, 408
PspPI	GGNCC	2 cut(s)	383, 513
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	457
RsaNI	GTAC	1 cut(s)	456
RseI	CAYNNNNRTG	1 cut(s)	261
SatI	GCNGC	4 cut(s)	129, 146, 376, 436
Sau3AI	GATC	2 cut(s)	29, 349
Sau96I	GGNCC	2 cut(s)	383, 513
ScrFI	CCNGG	3 cut(s)	202, 410, 422
SetI	ASST	9 cut(s)	37, 61, 155, 175, 253, 281, 380, 391, 411
SfaNI	GCATC	1 cut(s)	422
SfcI	CTRYAG	3 cut(s)	259, 280, 298
SinI	GGWCC	1 cut(s)	383
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	526
SmoI	CTYRAG	1 cut(s)	526
Sse9I	AATT	1 cut(s)	226
SsiI	CCGC	3 cut(s)	93, 358, 436
SspMI	CTAG	1 cut(s)	372
StyD4I	CCNGG	3 cut(s)	200, 408, 420
StyI	CCWWGG	2 cut(s)	83, 551
TaaI	ACNGT	1 cut(s)	263
TasI	AATT	1 cut(s)	226
TauI	GCSGC	1 cut(s)	438
TscAI	CASTG	3 cut(s)	114, 223, 268
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	3 cut(s)	128, 145, 375
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	2 cut(s)	381, 438
TspRI	CASTG	3 cut(s)	114, 223, 268
Van91I	CCANNNNNTGG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	383
XspI	CTAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.