Rh3CG044900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0013691
Physical Location & Seq
Forward (+)
2995492 .. 2996277
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG044900.1

Sequence Viewer

Length: 786 bp
ATGGCTTACAATGACTACGGCAATTACAGACCAGGTTACTCCACTGGCGGAGCTGGAGCTTACACCGACCAATGGGGAAATCCAAGGTATGATTCTGATGGCGAGGAGTGCCGTACAGTCATTGTTGATGCTGACGGTACTCGGAGAACAATCATTGGTTGTGATCCCCTCCGTAAACCAGAAACCTATGTGGTGACCGAGACTATCATTGAAGAACGTATTCACTCACCTTTATTACCTTCATACAGGCAAAGTTCTCACCCAGGTGTTGTTGAGCCAGTGAGAGGCTACGGCTATGCTGCTGATAACTCATGGCAGCGCAGGTCTTCGAGCCCTGTCAGAGGTGGTTATGTTTATGCTGATCAACCCTCCAGGATTGCACCATCCAATGGTGTGAATTGGCGCCCACAGCCCCAGCAAACCGGACACTATAGTGGCACTTCAGCAGGCTATAATGACTATAATGACTACAGCAACAAGCCAAGTTACAAGCTTAGTGGAAAGACTGACAACTATGATGACCGCTACAGCAACAAGCCAAGTTACAAGCATAGTGGAAAGAGTGACAACTATGATGATCACTACCGCAAAAATGAAACTGGCAGCTATGGAACACCTGTCAACATGATATCAAACAGCCGGCCTAAGCCAAGCCGTACTGTATATTCTACTGCTGCACTCCCCGTTCGCGGTGATGGCAGGCTCACTCTTCCAACAGATGACATGGAGAGAGCCTTGCACTACTTGAAGGAAAGTGCAAAGCCTTCACCATGGCCACGAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

29.31

Weight (kDa)

8.62

Isoelectric Point (pI)

51.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 312
AccB1I GGYRCC 1 cut(s) 402
AccB7I CCANNNNNTGG 1 cut(s) 389
AccII CGCG 1 cut(s) 690
AciI CCGC 4 cut(s) 48, 523, 586, 690
AclWI GGATC 1 cut(s) 158
AcoI YGGCCR 1 cut(s) 773
AcuI CTGAAG 1 cut(s) 426
AcyI GRCGYC 1 cut(s) 403
AfaI GTAC 3 cut(s) 115, 139, 658
AfiI CCNNNNNNNGG 5 cut(s) 72, 284, 341, 389, 689
AgsI TTSAA 2 cut(s) 212, 748
AjnI CCWGG 3 cut(s) 31, 262, 371
AjuI GAANNNNNNNTTGG 2 cut(s) 76, 108
AleI CACNNNNGTG 2 cut(s) 264, 432
AluBI AGCT 4 cut(s) 53, 59, 493, 606
AluI AGCT 4 cut(s) 53, 59, 493, 606
Alw26I GTCTC 1 cut(s) 194
AlwI GGATC 1 cut(s) 158
AoxI GGCC 2 cut(s) 641, 773
ApeKI GCWGC 4 cut(s) 299, 316, 603, 674
Asp700I GAANNNNTTC 1 cut(s) 219
AspLEI GCGC 2 cut(s) 321, 405
AsuHPI GGTGA 5 cut(s) 205, 219, 251, 704, 759
BalI TGGCCA 1 cut(s) 775
BanI GGYRCC 1 cut(s) 402
BanII GRGCYC 1 cut(s) 335
BbsI GAAGAC 1 cut(s) 318
BbvI GCAGC 4 cut(s) 286, 328, 615, 661
BccI CCATC 3 cut(s) 92, 391, 689
BceAI ACGGC 4 cut(s) 34, 96, 307, 639
BciT130I CCWGG 3 cut(s) 33, 264, 373
BclI TGATCA 2 cut(s) 361, 577
BcoDI GTCTC 1 cut(s) 194
BfmI CTRYAG 3 cut(s) 430, 469, 526
BfoI RGCGCY 1 cut(s) 406
BfuAI ACCTGC 1 cut(s) 312
BisI GCNGC 4 cut(s) 300, 317, 604, 675
BlsI GCNGC 4 cut(s) 301, 318, 605, 676
Bme1390I CCNGG 3 cut(s) 33, 264, 373
BmiI GGNNCC 1 cut(s) 404
BmrFI CCNGG 3 cut(s) 33, 264, 373
BmsI GCATC 1 cut(s) 118
BpiI GAAGAC 1 cut(s) 318
BpmI CTGGAG 2 cut(s) 75, 355
Bpu10I CCTNAGC 1 cut(s) 645
BsaHI GRCGYC 1 cut(s) 403
BsaJI CCNNGG 3 cut(s) 83, 262, 770
BsaWI WCCGGW 1 cut(s) 422
Bsc4I CCNNNNNNNGG 5 cut(s) 72, 284, 341, 389, 689
Bse118I RCCGGY 1 cut(s) 639
Bse1I ACTGG 3 cut(s) 49, 278, 604
BseBI CCWGG 3 cut(s) 33, 264, 373
BseDI CCNNGG 3 cut(s) 83, 262, 770
BseGI GGATG 1 cut(s) 383
BseLI CCNNNNNNNGG 5 cut(s) 72, 284, 341, 389, 689
BseNI ACTGG 3 cut(s) 49, 278, 604
BseRI GAGGAG 1 cut(s) 119
BseXI GCAGC 4 cut(s) 286, 328, 615, 661
BseYI CCCAGC 1 cut(s) 414
BsgI GTGCAG 1 cut(s) 660
Bsh1236I CGCG 1 cut(s) 690
BshFI GGCC 2 cut(s) 643, 775
BshNI GGYRCC 1 cut(s) 402
BsiSI CCGG 2 cut(s) 423, 640
BslI CCNNNNNNNGG 5 cut(s) 72, 284, 341, 389, 689
BsmAI GTCTC 1 cut(s) 194
BsnI GGCC 2 cut(s) 643, 775
Bsp1286I GDGCHC 1 cut(s) 335
Bsp143I GATC 3 cut(s) 163, 361, 577
Bsp19I CCATGG 1 cut(s) 770
BspACI CCGC 4 cut(s) 48, 523, 586, 690
BspANI GGCC 2 cut(s) 643, 775
BspFNI CGCG 1 cut(s) 690
BspLI GGNNCC 1 cut(s) 404
BspMI ACCTGC 1 cut(s) 312
BspPI GGATC 1 cut(s) 158
BspT107I GGYRCC 1 cut(s) 402
BsrFI RCCGGY 1 cut(s) 639
BsrI ACTGG 3 cut(s) 49, 278, 604
BssAI RCCGGY 1 cut(s) 639
BssECI CCNNGG 3 cut(s) 83, 262, 770
BssMI GATC 3 cut(s) 163, 361, 577
BssNI GRCGYC 1 cut(s) 403
BssT1I CCWWGG 2 cut(s) 83, 770
Bst2UI CCWGG 3 cut(s) 33, 264, 373
Bst4CI ACNGT 3 cut(s) 118, 137, 661
Bst6I CTCTTC 1 cut(s) 714
BstACI GRCGYC 1 cut(s) 403
BstC8I GCNNGC 3 cut(s) 448, 641, 701
BstDEI CTNAG 2 cut(s) 494, 645
BstDSI CCRYGG 1 cut(s) 770
BstEII GGTNACC 1 cut(s) 193
BstENI CCTNNNNNAGG 1 cut(s) 339
BstF5I GGATG 1 cut(s) 383
BstFNI CGCG 1 cut(s) 690
BstH2I RGCGCY 1 cut(s) 406
BstHHI GCGC 2 cut(s) 321, 405
BstKTI GATC 3 cut(s) 166, 364, 580
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 3 cut(s) 163, 361, 577
BstMWI GCNNNNNNNGC 3 cut(s) 108, 409, 696
BstNI CCWGG 3 cut(s) 33, 264, 373
BstPI GGTNACC 1 cut(s) 193
BstSCI CCNGG 3 cut(s) 31, 262, 371
BstSFI CTRYAG 3 cut(s) 430, 469, 526
BstUI CGCG 1 cut(s) 690
BstV1I GCAGC 4 cut(s) 286, 328, 615, 661
BstV2I GAAGAC 1 cut(s) 318
BsuRI GGCC 2 cut(s) 643, 775
BtgI CCRYGG 1 cut(s) 770
BtsCI GGATG 1 cut(s) 383
BtsIMutI CAGTG 2 cut(s) 42, 285
BveI ACCTGC 1 cut(s) 312
Cac8I GCNNGC 3 cut(s) 448, 641, 701
CfoI GCGC 2 cut(s) 321, 405
Cfr10I RCCGGY 1 cut(s) 639
CsiI ACCWGGT 1 cut(s) 31
Csp6I GTAC 3 cut(s) 114, 138, 657
CspCI CAANNNNNGTGG 4 cut(s) 478, 513, 535, 570
CviAII CATG 4 cut(s) 312, 625, 724, 771
CviQI GTAC 3 cut(s) 114, 138, 657
DdeI CTNAG 2 cut(s) 494, 645
DinI GGCGCC 1 cut(s) 404
DpnI GATC 3 cut(s) 165, 363, 579
DpnII GATC 3 cut(s) 163, 361, 577
EaeI YGGCCR 1 cut(s) 773
Eam1104I CTCTTC 1 cut(s) 714
EarI CTCTTC 1 cut(s) 714
EciI GGCGGA 1 cut(s) 63
Eco130I CCWWGG 2 cut(s) 83, 770
Eco24I GRGCYC 1 cut(s) 335
Eco32I GATATC 1 cut(s) 630
Eco57I CTGAAG 1 cut(s) 426
Eco91I GGTNACC 1 cut(s) 193
EcoNI CCTNNNNNAGG 1 cut(s) 339
EcoO65I GGTNACC 1 cut(s) 193
EcoRII CCWGG 3 cut(s) 31, 262, 371
EcoRV GATATC 1 cut(s) 630
EcoT14I CCWWGG 2 cut(s) 83, 770
EcoT38I GRGCYC 1 cut(s) 335
EgeI GGCGCC 1 cut(s) 404
EheI GGCGCC 1 cut(s) 404
ErhI CCWWGG 2 cut(s) 83, 770
FaeI CATG 4 cut(s) 315, 628, 727, 774
FatI CATG 4 cut(s) 311, 624, 723, 770
FbaI TGATCA 2 cut(s) 361, 577
Fnu4HI GCNGC 4 cut(s) 300, 317, 604, 675
FokI GGATG 1 cut(s) 370
FriOI GRGCYC 1 cut(s) 335
Fsp4HI GCNGC 4 cut(s) 300, 317, 604, 675
GlaI GCGC 2 cut(s) 320, 404
GluI GCNGC 4 cut(s) 300, 317, 604, 675
GsaI CCCAGC 1 cut(s) 418
GsuI CTGGAG 2 cut(s) 75, 355
HaeII RGCGCY 1 cut(s) 406
HaeIII GGCC 2 cut(s) 643, 775
HapII CCGG 2 cut(s) 423, 640
HhaI GCGC 2 cut(s) 321, 405
Hin1I GRCGYC 1 cut(s) 403
Hin1II CATG 4 cut(s) 315, 628, 727, 774
Hin6I GCGC 2 cut(s) 319, 403
HinP1I GCGC 2 cut(s) 319, 403
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 1 cut(s) 92
HpaII CCGG 2 cut(s) 423, 640
HphI GGTGA 5 cut(s) 205, 219, 251, 704, 759
Hpy166II GTNNAC 2 cut(s) 176, 622
Hpy188I TCNGA 3 cut(s) 97, 144, 341
Hpy8I GTNNAC 2 cut(s) 176, 622
HpyAV CCTTC 3 cut(s) 249, 742, 774
HpyCH4III ACNGT 3 cut(s) 118, 137, 661
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 4 cut(s) 380, 677, 739, 758
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 409, 696
HpyF3I CTNAG 2 cut(s) 494, 645
HpySE526I ACGT 1 cut(s) 217
Hsp92I GRCGYC 1 cut(s) 403
Hsp92II CATG 4 cut(s) 315, 628, 727, 774
HspAI GCGC 2 cut(s) 319, 403
KasI GGCGCC 1 cut(s) 402
KroI GCCGGC 1 cut(s) 639
KroNI GCCGGC 1 cut(s) 641
Ksp22I TGATCA 2 cut(s) 361, 577
Kzo9I GATC 3 cut(s) 163, 361, 577
LmnI GCTCC 2 cut(s) 50, 56
Lsp1109I GCAGC 4 cut(s) 286, 328, 615, 661
LweI GCATC 1 cut(s) 118
MabI ACCWGGT 1 cut(s) 31
MaeII ACGT 1 cut(s) 217
MaeIII GTNAC 5 cut(s) 35, 193, 485, 542, 563
MalI GATC 3 cut(s) 165, 363, 579
MboI GATC 3 cut(s) 163, 361, 577
MboII GAAGA 3 cut(s) 224, 318, 701
MhlI GDGCHC 1 cut(s) 335
MlsI TGGCCA 1 cut(s) 775
MluCI AATT 2 cut(s) 22, 397
MluNI TGGCCA 1 cut(s) 775
Mly113I GGCGCC 1 cut(s) 403
MmeI TCCRAC 1 cut(s) 737
MnlI CCTC 5 cut(s) 97, 179, 278, 335, 379
Mox20I TGGCCA 1 cut(s) 775
MroNI GCCGGC 1 cut(s) 639
MroXI GAANNNNTTC 1 cut(s) 219
MscI TGGCCA 1 cut(s) 775
MslI CAYNNNNRTG 2 cut(s) 264, 432
Msp20I TGGCCA 1 cut(s) 775
MspI CCGG 2 cut(s) 423, 640
MspR9I CCNGG 3 cut(s) 33, 264, 373
MvaI CCWGG 3 cut(s) 33, 264, 373
MvnI CGCG 1 cut(s) 690
MwoI GCNNNNNNNGC 3 cut(s) 108, 409, 696
NaeI GCCGGC 1 cut(s) 641
NarI GGCGCC 1 cut(s) 403
NcoI CCATGG 1 cut(s) 770
NdeII GATC 3 cut(s) 163, 361, 577
NgoMIV GCCGGC 1 cut(s) 639
NlaIII CATG 4 cut(s) 315, 628, 727, 774
NlaIV GGNNCC 1 cut(s) 404
NmuCI GTSAC 2 cut(s) 193, 563
OliI CACNNNNGTG 2 cut(s) 264, 432
PdiI GCCGGC 1 cut(s) 641
PdmI GAANNNNTTC 1 cut(s) 219
PfeI GAWTC 1 cut(s) 92
PflMI CCANNNNNTGG 1 cut(s) 389
PfoI TCCNGGA 1 cut(s) 371
PkrI GCNGC 4 cut(s) 301, 318, 605, 676
PluTI GGCGCC 1 cut(s) 406
Psp6I CCWGG 3 cut(s) 31, 262, 371
PspEI GGTNACC 1 cut(s) 193
PspFI CCCAGC 1 cut(s) 414
PspGI CCWGG 3 cut(s) 31, 262, 371
PspN4I GGNNCC 1 cut(s) 404
RsaI GTAC 3 cut(s) 115, 139, 658
RsaNI GTAC 3 cut(s) 114, 138, 657
RseI CAYNNNNRTG 2 cut(s) 264, 432
SatI GCNGC 4 cut(s) 300, 317, 604, 675
Sau3AI GATC 3 cut(s) 163, 361, 577
ScrFI CCNGG 3 cut(s) 33, 264, 373
SduI GDGCHC 1 cut(s) 335
SexAI ACCWGGT 1 cut(s) 31
SfaNI GCATC 1 cut(s) 118
SfcI CTRYAG 3 cut(s) 430, 469, 526
SfoI GGCGCC 1 cut(s) 404
SmiMI CAYNNNNRTG 2 cut(s) 264, 432
Sse9I AATT 2 cut(s) 22, 397
SsiI CCGC 4 cut(s) 48, 523, 586, 690
SspDI GGCGCC 1 cut(s) 402
StyD4I CCNGG 3 cut(s) 31, 262, 371
StyI CCWWGG 2 cut(s) 83, 770
TaaI ACNGT 3 cut(s) 118, 137, 661
TaiI ACGT 1 cut(s) 220
TaqI TCGA 1 cut(s) 329
TaqII GACCGA 1 cut(s) 212
TasI AATT 2 cut(s) 22, 397
TfiI GAWTC 1 cut(s) 92
TscAI CASTG 2 cut(s) 49, 285
TseFI GTSAC 2 cut(s) 193, 563
TseI GCWGC 4 cut(s) 299, 316, 603, 674
Tsp45I GTSAC 2 cut(s) 193, 563
TspDTI ATGAA 2 cut(s) 231, 609
TspGWI ACGGA 1 cut(s) 161
TspRI CASTG 2 cut(s) 49, 285
Van91I CCANNNNNTGG 1 cut(s) 389
XagI CCTNNNNNAGG 1 cut(s) 339
XmnI GAANNNNTTC 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.