Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0013691

Physical Location & Seq

Genomic Coordinates Reverse (-)

21054835 .. 21055898

Gene Structure 1064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g19290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTTACATTGGCGTCACTGTGACATCTTCGACAATCCAAGTAATCAGAAGAAAAAAAAAATTCATACAGGTACTTCCAAACTTGAAGCAATGACCAGCTACGGTCATGGACCAGGCTACTCCACCAGACCAGCTTACTCCACCGGACCAGCCTACTCCACCGGACCAGCCTACTCTACCAGACCAGCCTACACCACCGGAAGCAACGGGGTAAGACCGTACACCAATGAGTGGGGCCAAACAAGGCATGGCTCTCCCCCAGGTGGAAATTACGGCTATCCTGCCACCGGAGACAACTGGAGTAGAAGGCCTTCGAGCCCTCCACGACAGGCCTTTGAGCCAGCAAGAACTTATGGCGGCTACCCTAATCAAAGTGGATACAACGGGCCTCCAGGATATGGTGATTACAGTGATCAGTACAGCACCAACAAGCCGTACAAACATTCCAACACCACTAGGTACGACAACTATGATGACCACTCACACAACCGCAAACATAACGGTGGTGCCATGGGAACAGCAATTAACATGATAGCTAACGGTAGTGGCCACAGCGCTAAGCCAAACCGTGGATCACTACTGGCGGCTGAACGTCCAGTTCGAGGGGATGGCAGGCTCAGCCTGCCAACGGATGACATGGAGAGAGCCCTGCACTACTTGAAGGAGAGTTCAAAGCCCAAGGACAAATATTCTTATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

25.75

Weight (kDa)

9.61

Isoelectric Point (pI)

31.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04001
malus_domestica	MD12G1233400.v1.1
prunus_persica	Prupe.6G336600_v2.0.a1 Prupe.6G336700_v2.0.a1
pyrus_communis	pycom04g19290 pycom12g21590
rosa_chinensis	RchiOBHm_Chr3g0452591
rosa_laevigata	RLG00000025581
rosa_multiflora	Rmu_sc0000608.1_g000023 Rmu_sc0028732.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429630
rosa_rugosa	Rorug02G0641500 Rorug02G0641500
rosa_samantha	Rh3AG044100 Rh3BG046200 Rh3CG044900 Rh3DG045200
rosa_wichuraiana	Rw3G003420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	696
AccB1I	GGYRCC	1 cut(s)	506
AccB7I	CCANNNNNTGG	3 cut(s)	231, 398, 569
AciI	CCGC	3 cut(s)	357, 490, 584
AclWI	GGATC	1 cut(s)	580
AcoI	YGGCCR	1 cut(s)	547
AcsI	RAATTY	1 cut(s)	60
AcyI	GRCGYC	1 cut(s)	13
AfaI	GTAC	5 cut(s)	73, 221, 419, 437, 461
AfeI	AGCGCT	1 cut(s)	556
AfiI	CCNNNNNNNGG	7 cut(s)	231, 263, 287, 398, 569, 602, 628
AgsI	TTSAA	3 cut(s)	86, 661, 672
AjnI	CCWGG	3 cut(s)	112, 259, 391
AluBI	AGCT	3 cut(s)	99, 134, 536
AluI	AGCT	3 cut(s)	99, 134, 536
Alw26I	GTCTC	1 cut(s)	285
AlwI	GGATC	1 cut(s)	580
Aor51HI	AGCGCT	1 cut(s)	556
AoxI	GGCC	5 cut(s)	235, 308, 330, 386, 547
ApoI	RAATTY	1 cut(s)	60
Asp700I	GAANNNNTTC	1 cut(s)	310
AspLEI	GCGC	1 cut(s)	557
AspS9I	GGNCC	5 cut(s)	110, 146, 164, 235, 386
AsuHPI	GGTGA	1 cut(s)	413
AvaII	GGWCC	3 cut(s)	110, 146, 164
BalI	TGGCCA	1 cut(s)	549
BanI	GGYRCC	1 cut(s)	506
BanII	GRGCYC	2 cut(s)	320, 649
BarI	GAAGNNNNNNTAC	2 cut(s)	295, 327
BccI	CCATC	1 cut(s)	602
BceAI	ACGGC	2 cut(s)	289, 418
BciT130I	CCWGG	3 cut(s)	114, 261, 393
BciVI	GTATCC	1 cut(s)	371
BclI	TGATCA	1 cut(s)	412
BcoDI	GTCTC	1 cut(s)	285
BfaI	CTAG	1 cut(s)	456
BfoI	RGCGCY	1 cut(s)	558
BfuI	GTATCC	1 cut(s)	371
BisI	GCNGC	2 cut(s)	358, 585
BlpI	GCTNAGC	2 cut(s)	558, 617
BlsI	GCNGC	2 cut(s)	359, 586
Bme1390I	CCNGG	3 cut(s)	114, 261, 393
Bme18I	GGWCC	3 cut(s)	110, 146, 164
BmgT120I	GGNCC	5 cut(s)	110, 146, 164, 235, 386
BmiI	GGNNCC	2 cut(s)	236, 508
BmrFI	CCNGG	3 cut(s)	114, 261, 393
BpmI	CTGGAG	2 cut(s)	319, 375
Bpu1102I	GCTNAGC	2 cut(s)	558, 617
BsaHI	GRCGYC	1 cut(s)	13
BsaJI	CCNNGG	4 cut(s)	259, 510, 568, 678
BsaWI	WCCGGW	4 cut(s)	143, 161, 197, 287
Bsc4I	CCNNNNNNNGG	7 cut(s)	231, 263, 287, 398, 569, 602, 628
Bse1I	ACTGG	3 cut(s)	302, 585, 596
Bse3DI	GCAATG	1 cut(s)	96
BseBI	CCWGG	3 cut(s)	114, 261, 393
BseDI	CCNNGG	4 cut(s)	259, 510, 568, 678
BseGI	GGATG	2 cut(s)	613, 637
BseLI	CCNNNNNNNGG	7 cut(s)	231, 263, 287, 398, 569, 602, 628
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	631
BseNI	ACTGG	3 cut(s)	302, 585, 596
BsgI	GTGCAG	1 cut(s)	635
BshFI	GGCC	5 cut(s)	237, 310, 332, 388, 549
BshNI	GGYRCC	1 cut(s)	506
BsiSI	CCGG	4 cut(s)	144, 162, 198, 288
BslI	CCNNNNNNNGG	7 cut(s)	231, 263, 287, 398, 569, 602, 628
BsmAI	GTCTC	1 cut(s)	285
BsnI	GGCC	5 cut(s)	237, 310, 332, 388, 549
Bsp1286I	GDGCHC	2 cut(s)	320, 649
Bsp143I	GATC	2 cut(s)	412, 572
Bsp1720I	GCTNAGC	2 cut(s)	558, 617
Bsp19I	CCATGG	1 cut(s)	510
BspACI	CCGC	3 cut(s)	357, 490, 584
BspANI	GGCC	5 cut(s)	237, 310, 332, 388, 549
BspCNI	CTCAG	1 cut(s)	630
BspLI	GGNNCC	2 cut(s)	236, 508
BspPI	GGATC	1 cut(s)	580
BspT107I	GGYRCC	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	96
BsrI	ACTGG	3 cut(s)	302, 585, 596
BssECI	CCNNGG	4 cut(s)	259, 510, 568, 678
BssMI	GATC	2 cut(s)	412, 572
BssNI	GRCGYC	1 cut(s)	13
BssT1I	CCWWGG	2 cut(s)	510, 678
Bst2UI	CCWGG	3 cut(s)	114, 261, 393
Bst4CI	ACNGT	7 cut(s)	20, 104, 219, 410, 503, 542, 569
BstACI	GRCGYC	1 cut(s)	13
BstC8I	GCNNGC	3 cut(s)	342, 614, 623
BstDEI	CTNAG	2 cut(s)	558, 617
BstDSI	CCRYGG	2 cut(s)	510, 568
BstF5I	GGATG	2 cut(s)	613, 637
BstH2I	RGCGCY	1 cut(s)	558
BstHHI	GCGC	1 cut(s)	557
BstKTI	GATC	2 cut(s)	415, 575
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	2 cut(s)	412, 572
BstMWI	GCNNNNNNNGC	2 cut(s)	618, 622
BstNI	CCWGG	3 cut(s)	114, 261, 393
BstSCI	CCNGG	3 cut(s)	112, 259, 391
BsuI	GTATCC	1 cut(s)	371
BsuRI	GGCC	5 cut(s)	237, 310, 332, 388, 549
BtgI	CCRYGG	2 cut(s)	510, 568
BtsCI	GGATG	2 cut(s)	613, 637
BtsIMutI	CAGTG	2 cut(s)	16, 415
Cac8I	GCNNGC	3 cut(s)	342, 614, 623
CfoI	GCGC	1 cut(s)	557
Cfr13I	GGNCC	5 cut(s)	110, 146, 164, 235, 386
CseI	GACGC	1 cut(s)	2
Csp6I	GTAC	5 cut(s)	72, 220, 418, 436, 460
CviAII	CATG	5 cut(s)	107, 248, 511, 529, 637
CviQI	GTAC	5 cut(s)	72, 220, 418, 436, 460
DdeI	CTNAG	2 cut(s)	558, 617
DpnI	GATC	2 cut(s)	414, 574
DpnII	GATC	2 cut(s)	412, 572
EaeI	YGGCCR	1 cut(s)	547
Eco130I	CCWWGG	2 cut(s)	510, 678
Eco147I	AGGCCT	2 cut(s)	310, 332
Eco24I	GRGCYC	2 cut(s)	320, 649
Eco47I	GGWCC	3 cut(s)	110, 146, 164
Eco47III	AGCGCT	1 cut(s)	556
EcoRII	CCWGG	3 cut(s)	112, 259, 391
EcoT14I	CCWWGG	2 cut(s)	510, 678
EcoT38I	GRGCYC	2 cut(s)	320, 649
ErhI	CCWWGG	2 cut(s)	510, 678
FaeI	CATG	5 cut(s)	110, 251, 514, 532, 640
FatI	CATG	5 cut(s)	106, 247, 510, 528, 636
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	2 cut(s)	358, 585
FokI	GGATG	2 cut(s)	620, 644
FriOI	GRGCYC	2 cut(s)	320, 649
Fsp4HI	GCNGC	2 cut(s)	358, 585
FspBI	CTAG	1 cut(s)	456
GlaI	GCGC	1 cut(s)	556
GluI	GCNGC	2 cut(s)	358, 585
GsuI	CTGGAG	2 cut(s)	319, 375
HaeII	RGCGCY	1 cut(s)	558
HaeIII	GGCC	5 cut(s)	237, 310, 332, 388, 549
HapII	CCGG	4 cut(s)	144, 162, 198, 288
HgaI	GACGC	1 cut(s)	2
HhaI	GCGC	1 cut(s)	557
Hin1I	GRCGYC	1 cut(s)	13
Hin1II	CATG	5 cut(s)	110, 251, 514, 532, 640
Hin6I	GCGC	1 cut(s)	555
HinP1I	GCGC	1 cut(s)	555
HpaII	CCGG	4 cut(s)	144, 162, 198, 288
HphI	GGTGA	1 cut(s)	413
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	1 cut(s)	48
Hpy8I	GTNNAC	1 cut(s)	222
HpyAV	CCTTC	3 cut(s)	300, 321, 655
HpyCH4III	ACNGT	7 cut(s)	20, 104, 219, 410, 503, 542, 569
HpyCH4IV	ACGT	1 cut(s)	592
HpyCH4V	TGCA	1 cut(s)	652
HpyF10VI	GCNNNNNNNGC	2 cut(s)	618, 622
HpyF3I	CTNAG	2 cut(s)	558, 617
HpySE526I	ACGT	1 cut(s)	592
Hsp92I	GRCGYC	1 cut(s)	13
Hsp92II	CATG	5 cut(s)	110, 251, 514, 532, 640
HspAI	GCGC	1 cut(s)	555
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	2 cut(s)	412, 572
MaeI	CTAG	1 cut(s)	456
MaeII	ACGT	1 cut(s)	592
MaeIII	GTNAC	3 cut(s)	3, 14, 20
MalI	GATC	2 cut(s)	414, 574
MboI	GATC	2 cut(s)	412, 572
MboII	GAAGA	2 cut(s)	19, 61
MhlI	GDGCHC	2 cut(s)	320, 649
MlsI	TGGCCA	1 cut(s)	549
MluCI	AATT	3 cut(s)	60, 268, 522
MluNI	TGGCCA	1 cut(s)	549
MmeI	TCCRAC	1 cut(s)	471
MnlI	CCTC	3 cut(s)	330, 399, 596
Mox20I	TGGCCA	1 cut(s)	549
MroXI	GAANNNNTTC	1 cut(s)	310
MscI	TGGCCA	1 cut(s)	549
MseI	TTAA	1 cut(s)	525
MslI	CAYNNNNRTG	1 cut(s)	501
Msp20I	TGGCCA	1 cut(s)	549
MspI	CCGG	4 cut(s)	144, 162, 198, 288
MspR9I	CCNGG	3 cut(s)	114, 261, 393
MvaI	CCWGG	3 cut(s)	114, 261, 393
MwoI	GCNNNNNNNGC	2 cut(s)	618, 622
NcoI	CCATGG	1 cut(s)	510
NdeII	GATC	2 cut(s)	412, 572
NlaIII	CATG	5 cut(s)	110, 251, 514, 532, 640
NlaIV	GGNNCC	2 cut(s)	236, 508
NmuCI	GTSAC	2 cut(s)	14, 20
PceI	AGGCCT	2 cut(s)	310, 332
PcsI	WCGNNNNNNNCGW	1 cut(s)	598
PdmI	GAANNNNTTC	1 cut(s)	310
PflMI	CCANNNNNTGG	3 cut(s)	231, 398, 569
PfoI	TCCNGGA	1 cut(s)	391
PkrI	GCNGC	2 cut(s)	359, 586
PsiI	TTATAA	1 cut(s)	696
Psp6I	CCWGG	3 cut(s)	112, 259, 391
PspGI	CCWGG	3 cut(s)	112, 259, 391
PspN4I	GGNNCC	2 cut(s)	236, 508
PspPI	GGNCC	5 cut(s)	110, 146, 164, 235, 386
RsaI	GTAC	5 cut(s)	73, 221, 419, 437, 461
RsaNI	GTAC	5 cut(s)	72, 220, 418, 436, 460
RseI	CAYNNNNRTG	1 cut(s)	501
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	2 cut(s)	358, 585
Sau3AI	GATC	2 cut(s)	412, 572
Sau96I	GGNCC	5 cut(s)	110, 146, 164, 235, 386
ScrFI	CCNGG	3 cut(s)	114, 261, 393
SduI	GDGCHC	2 cut(s)	320, 649
SetI	ASST	7 cut(s)	73, 101, 136, 265, 461, 538, 595
SinI	GGWCC	3 cut(s)	110, 146, 164
SmiMI	CAYNNNNRTG	1 cut(s)	501
Sse9I	AATT	3 cut(s)	60, 268, 522
SseBI	AGGCCT	2 cut(s)	310, 332
SsiI	CCGC	3 cut(s)	357, 490, 584
SspI	AATATT	1 cut(s)	689
SspMI	CTAG	1 cut(s)	456
StuI	AGGCCT	2 cut(s)	310, 332
StyD4I	CCNGG	3 cut(s)	112, 259, 391
StyI	CCWWGG	2 cut(s)	510, 678
TaaI	ACNGT	7 cut(s)	20, 104, 219, 410, 503, 542, 569
TaiI	ACGT	1 cut(s)	595
TaqI	TCGA	3 cut(s)	30, 314, 601
TasI	AATT	3 cut(s)	60, 268, 522
TatI	WGTACW	1 cut(s)	417
TauI	GCSGC	2 cut(s)	360, 587
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	2 cut(s)	23, 415
TseFI	GTSAC	2 cut(s)	14, 20
Tsp45I	GTSAC	2 cut(s)	14, 20
TspDTI	ATGAA	1 cut(s)	53
TspGWI	ACGGA	1 cut(s)	644
TspRI	CASTG	2 cut(s)	23, 415
Van91I	CCANNNNNTGG	3 cut(s)	231, 398, 569
VpaK11BI	GGWCC	3 cut(s)	110, 146, 164
XapI	RAATTY	1 cut(s)	60
XcmI	CCANNNNNNNNNTGG	1 cut(s)	245
XmnI	GAANNNNTTC	1 cut(s)	310
XspI	CTAG	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.