Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0013691

Physical Location & Seq

Genomic Coordinates Reverse (-)

46846561 .. 46847346

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025581

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCTTATAATGACTACGGCAATTACAGACCAGGTTACTCCACCGGCGGAGTTGGAGCTTACACCGACCAATGGGGAAATCCAAGGTATGATTCTGATGGCGAAGAGTGCCGTACAGTCATTGTTGATGCTGACGGTACTCGAAGAACAATCATTGGTTGTGATCCCATGCGTAAACCAGAAACCTATGTGGTGACCGAGACTATCATTGAAGAACGTATTCACTCACCTTTATTACCTTCATACAGGCAAAGTTCTCACCCAGGTGTTGTTGAGCCAGTGAGAGGCTACGGCTATGCTGCCGATAACTCATGGCAGCGCAGGTCTTCGAGCCCCGTCAGAGGTGGTTATGTTTATGCTGACCAACCCTCCAGGATTGCACCATCCAATGGTGTGAATTGGCGCCCACAGCCCCATCAAACCGGACACTATAGTGGCACTCCAGCTGGCTATAATGACTACAGCAACAAGCCAAGTTACAAGAATAGTGGGAAGACTGACAACTATGATGACCACTACAGCAACAAGCCAAGTTACAAGCATAGTGGAAAGACTGACAACTATGATGATCACTACCGCAAAAATGAAACTGGCAGCTATGGACCAGCTGTCAACATGATATCAAACATGGTATCAAGCCGGCCTAAGCCAAGCCGTACTGCATATTCTACTGGTGCACTCCCCGTTCGCGGTGATGGCAGGCTCACTATTCCAACAGATGATATGGAGAAGGCCTTGCACTACTTGAAGGAAAGTGCAAAGCCTTCACCATGGCCACGAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

262

Amino Acids

29.2

Weight (kDa)

8.62

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04001
malus_domestica	MD12G1233400.v1.1
prunus_persica	Prupe.6G336600_v2.0.a1 Prupe.6G336700_v2.0.a1
pyrus_communis	pycom04g19290 pycom12g21590
rosa_chinensis	RchiOBHm_Chr3g0452591
rosa_laevigata	RLG00000025581
rosa_multiflora	Rmu_sc0000608.1_g000023 Rmu_sc0028732.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429630
rosa_rugosa	Rorug02G0641500 Rorug02G0641500
rosa_samantha	Rh3AG044100 Rh3BG046200 Rh3CG044900 Rh3DG045200
rosa_wichuraiana	Rw3G003420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	9
Acc36I	ACCTGC	1 cut(s)	312
AccB1I	GGYRCC	1 cut(s)	402
AccB7I	CCANNNNNTGG	1 cut(s)	389
AccII	CGCG	1 cut(s)	690
AciI	CCGC	3 cut(s)	48, 577, 690
AclWI	GGATC	1 cut(s)	158
AcoI	YGGCCR	1 cut(s)	773
AcyI	GRCGYC	1 cut(s)	403
AfaI	GTAC	3 cut(s)	115, 139, 658
AfiI	CCNNNNNNNGG	5 cut(s)	72, 284, 341, 389, 689
AgsI	TTSAA	2 cut(s)	212, 748
AhdI	GACNNNNNGTC	1 cut(s)	608
AjnI	CCWGG	3 cut(s)	31, 262, 371
AjuI	GAANNNNNNNTTGG	2 cut(s)	76, 108
AleI	CACNNNNGTG	2 cut(s)	264, 432
AluBI	AGCT	4 cut(s)	59, 446, 597, 608
AluI	AGCT	4 cut(s)	59, 446, 597, 608
Alw21I	GWGCWC	1 cut(s)	679
Alw26I	GTCTC	1 cut(s)	194
Alw44I	GTGCAC	1 cut(s)	675
AlwI	GGATC	1 cut(s)	158
AoxI	GGCC	3 cut(s)	641, 732, 773
ApaLI	GTGCAC	1 cut(s)	675
ApeKI	GCWGC	3 cut(s)	299, 316, 594
Asp700I	GAANNNNTTC	1 cut(s)	219
AspLEI	GCGC	2 cut(s)	321, 405
AspS9I	GGNCC	1 cut(s)	602
AsuHPI	GGTGA	5 cut(s)	205, 219, 251, 704, 759
AvaII	GGWCC	1 cut(s)	602
BaeGI	GKGCMC	1 cut(s)	679
BalI	TGGCCA	1 cut(s)	775
BanI	GGYRCC	1 cut(s)	402
BanII	GRGCYC	1 cut(s)	335
BbsI	GAAGAC	2 cut(s)	318, 500
Bbv12I	GWGCWC	1 cut(s)	679
BbvI	GCAGC	3 cut(s)	286, 328, 606
BccI	CCATC	4 cut(s)	92, 391, 423, 689
BceAI	ACGGC	4 cut(s)	34, 96, 307, 639
BciT130I	CCWGG	3 cut(s)	33, 264, 373
BclI	TGATCA	1 cut(s)	568
BcoDI	GTCTC	1 cut(s)	194
BfmI	CTRYAG	3 cut(s)	430, 460, 517
BfoI	RGCGCY	1 cut(s)	406
BfuAI	ACCTGC	1 cut(s)	312
BisI	GCNGC	3 cut(s)	300, 317, 595
BlsI	GCNGC	3 cut(s)	301, 318, 596
Bme1390I	CCNGG	3 cut(s)	33, 264, 373
Bme18I	GGWCC	1 cut(s)	602
BmeRI	GACNNNNNGTC	1 cut(s)	608
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	1 cut(s)	404
BmrFI	CCNGG	3 cut(s)	33, 264, 373
BmsI	GCATC	1 cut(s)	118
BpiI	GAAGAC	2 cut(s)	318, 500
BpmI	CTGGAG	2 cut(s)	355, 426
Bpu10I	CCTNAGC	1 cut(s)	645
BsaHI	GRCGYC	1 cut(s)	403
BsaJI	CCNNGG	3 cut(s)	83, 262, 770
BsaWI	WCCGGW	1 cut(s)	422
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bsc4I	CCNNNNNNNGG	5 cut(s)	72, 284, 341, 389, 689
Bse118I	RCCGGY	2 cut(s)	44, 639
Bse1I	ACTGG	3 cut(s)	278, 595, 676
BseBI	CCWGG	3 cut(s)	33, 264, 373
BseDI	CCNNGG	3 cut(s)	83, 262, 770
BseGI	GGATG	1 cut(s)	383
BseLI	CCNNNNNNNGG	5 cut(s)	72, 284, 341, 389, 689
BseNI	ACTGG	3 cut(s)	278, 595, 676
BseSI	GKGCMC	1 cut(s)	679
BseXI	GCAGC	3 cut(s)	286, 328, 606
Bsh1236I	CGCG	1 cut(s)	690
BshFI	GGCC	3 cut(s)	643, 734, 775
BshNI	GGYRCC	1 cut(s)	402
BsiHKAI	GWGCWC	1 cut(s)	679
BsiSI	CCGG	3 cut(s)	45, 423, 640
BslI	CCNNNNNNNGG	5 cut(s)	72, 284, 341, 389, 689
BsmAI	GTCTC	1 cut(s)	194
BsnI	GGCC	3 cut(s)	643, 734, 775
Bsp1286I	GDGCHC	2 cut(s)	335, 679
Bsp143I	GATC	2 cut(s)	163, 568
Bsp19I	CCATGG	1 cut(s)	770
BspACI	CCGC	3 cut(s)	48, 577, 690
BspANI	GGCC	3 cut(s)	643, 734, 775
BspFNI	CGCG	1 cut(s)	690
BspLI	GGNNCC	1 cut(s)	404
BspMI	ACCTGC	1 cut(s)	312
BspPI	GGATC	1 cut(s)	158
BspT107I	GGYRCC	1 cut(s)	402
BsrFI	RCCGGY	2 cut(s)	44, 639
BsrI	ACTGG	3 cut(s)	278, 595, 676
BssAI	RCCGGY	2 cut(s)	44, 639
BssECI	CCNNGG	3 cut(s)	83, 262, 770
BssMI	GATC	2 cut(s)	163, 568
BssNI	GRCGYC	1 cut(s)	403
BssT1I	CCWWGG	2 cut(s)	83, 770
Bst2UI	CCWGG	3 cut(s)	33, 264, 373
Bst4CI	ACNGT	2 cut(s)	118, 137
Bst6I	CTCTTC	1 cut(s)	99
BstACI	GRCGYC	1 cut(s)	403
BstC8I	GCNNGC	3 cut(s)	448, 641, 701
BstDEI	CTNAG	1 cut(s)	645
BstDSI	CCRYGG	1 cut(s)	770
BstEII	GGTNACC	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	383
BstFNI	CGCG	1 cut(s)	690
BstH2I	RGCGCY	1 cut(s)	406
BstHHI	GCGC	2 cut(s)	321, 405
BstKTI	GATC	2 cut(s)	166, 571
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	2 cut(s)	163, 568
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 409, 696
BstNI	CCWGG	3 cut(s)	33, 264, 373
BstPI	GGTNACC	1 cut(s)	193
BstSCI	CCNGG	3 cut(s)	31, 262, 371
BstSFI	CTRYAG	3 cut(s)	430, 460, 517
BstSLI	GKGCMC	1 cut(s)	679
BstUI	CGCG	1 cut(s)	690
BstV1I	GCAGC	3 cut(s)	286, 328, 606
BstV2I	GAAGAC	2 cut(s)	318, 500
BsuRI	GGCC	3 cut(s)	643, 734, 775
BtgI	CCRYGG	1 cut(s)	770
BtsCI	GGATG	1 cut(s)	383
BtsIMutI	CAGTG	1 cut(s)	285
BveI	ACCTGC	1 cut(s)	312
Cac8I	GCNNGC	3 cut(s)	448, 641, 701
CfoI	GCGC	2 cut(s)	321, 405
Cfr10I	RCCGGY	2 cut(s)	44, 639
Cfr13I	GGNCC	1 cut(s)	602
CsiI	ACCWGGT	1 cut(s)	31
Csp6I	GTAC	3 cut(s)	114, 138, 657
CspCI	CAANNNNNGTGG	4 cut(s)	469, 504, 526, 561
CviAII	CATG	5 cut(s)	169, 312, 616, 628, 771
CviQI	GTAC	3 cut(s)	114, 138, 657
DdeI	CTNAG	1 cut(s)	645
DinI	GGCGCC	1 cut(s)	404
DpnI	GATC	2 cut(s)	165, 570
DpnII	GATC	2 cut(s)	163, 568
DriI	GACNNNNNGTC	1 cut(s)	608
EaeI	YGGCCR	1 cut(s)	773
Eam1104I	CTCTTC	1 cut(s)	99
Eam1105I	GACNNNNNGTC	1 cut(s)	608
EarI	CTCTTC	1 cut(s)	99
EciI	GGCGGA	1 cut(s)	63
Eco130I	CCWWGG	2 cut(s)	83, 770
Eco147I	AGGCCT	1 cut(s)	734
Eco24I	GRGCYC	1 cut(s)	335
Eco32I	GATATC	1 cut(s)	621
Eco47I	GGWCC	1 cut(s)	602
Eco91I	GGTNACC	1 cut(s)	193
EcoO65I	GGTNACC	1 cut(s)	193
EcoRII	CCWGG	3 cut(s)	31, 262, 371
EcoRV	GATATC	1 cut(s)	621
EcoT14I	CCWWGG	2 cut(s)	83, 770
EcoT38I	GRGCYC	1 cut(s)	335
EgeI	GGCGCC	1 cut(s)	404
EheI	GGCGCC	1 cut(s)	404
ErhI	CCWWGG	2 cut(s)	83, 770
FaeI	CATG	5 cut(s)	172, 315, 619, 631, 774
FatI	CATG	5 cut(s)	168, 311, 615, 627, 770
FbaI	TGATCA	1 cut(s)	568
Fnu4HI	GCNGC	3 cut(s)	300, 317, 595
FokI	GGATG	1 cut(s)	370
FriOI	GRGCYC	1 cut(s)	335
Fsp4HI	GCNGC	3 cut(s)	300, 317, 595
GlaI	GCGC	2 cut(s)	320, 404
GluI	GCNGC	3 cut(s)	300, 317, 595
GsuI	CTGGAG	2 cut(s)	355, 426
HaeII	RGCGCY	1 cut(s)	406
HaeIII	GGCC	3 cut(s)	643, 734, 775
HapII	CCGG	3 cut(s)	45, 423, 640
HhaI	GCGC	2 cut(s)	321, 405
Hin1I	GRCGYC	1 cut(s)	403
Hin1II	CATG	5 cut(s)	172, 315, 619, 631, 774
Hin6I	GCGC	2 cut(s)	319, 403
HinP1I	GCGC	2 cut(s)	319, 403
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	3 cut(s)	45, 423, 640
HphI	GGTGA	5 cut(s)	205, 219, 251, 704, 759
Hpy166II	GTNNAC	3 cut(s)	176, 613, 677
Hpy188I	TCNGA	2 cut(s)	97, 341
Hpy8I	GTNNAC	3 cut(s)	176, 613, 677
HpyAV	CCTTC	4 cut(s)	249, 724, 742, 774
HpyCH4III	ACNGT	2 cut(s)	118, 137
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	5 cut(s)	380, 662, 677, 739, 758
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 409, 696
HpyF3I	CTNAG	1 cut(s)	645
HpySE526I	ACGT	1 cut(s)	217
Hsp92I	GRCGYC	1 cut(s)	403
Hsp92II	CATG	5 cut(s)	172, 315, 619, 631, 774
HspAI	GCGC	2 cut(s)	319, 403
KasI	GGCGCC	1 cut(s)	402
KroI	GCCGGC	1 cut(s)	639
KroNI	GCCGGC	1 cut(s)	641
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	2 cut(s)	163, 568
LmnI	GCTCC	1 cut(s)	56
Lsp1109I	GCAGC	3 cut(s)	286, 328, 606
LweI	GCATC	1 cut(s)	118
MabI	ACCWGGT	1 cut(s)	31
MaeII	ACGT	1 cut(s)	217
MaeIII	GTNAC	4 cut(s)	35, 193, 476, 533
MalI	GATC	2 cut(s)	165, 570
MboI	GATC	2 cut(s)	163, 568
MboII	GAAGA	5 cut(s)	116, 156, 224, 318, 505
MhlI	GDGCHC	2 cut(s)	335, 679
MlsI	TGGCCA	1 cut(s)	775
MluCI	AATT	2 cut(s)	22, 397
MluNI	TGGCCA	1 cut(s)	775
Mly113I	GGCGCC	1 cut(s)	403
MmeI	TCCRAC	2 cut(s)	34, 737
MnlI	CCTC	3 cut(s)	278, 335, 379
Mox20I	TGGCCA	1 cut(s)	775
MroNI	GCCGGC	1 cut(s)	639
MroXI	GAANNNNTTC	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	775
MslI	CAYNNNNRTG	2 cut(s)	264, 432
Msp20I	TGGCCA	1 cut(s)	775
MspA1I	CMGCKG	2 cut(s)	446, 608
MspI	CCGG	3 cut(s)	45, 423, 640
MspR9I	CCNGG	3 cut(s)	33, 264, 373
MvaI	CCWGG	3 cut(s)	33, 264, 373
MvnI	CGCG	1 cut(s)	690
MwoI	GCNNNNNNNGC	3 cut(s)	108, 409, 696
NaeI	GCCGGC	1 cut(s)	641
NarI	GGCGCC	1 cut(s)	403
NcoI	CCATGG	1 cut(s)	770
NdeII	GATC	2 cut(s)	163, 568
NgoMIV	GCCGGC	1 cut(s)	639
NlaIII	CATG	5 cut(s)	172, 315, 619, 631, 774
NlaIV	GGNNCC	1 cut(s)	404
NmuCI	GTSAC	1 cut(s)	193
OliI	CACNNNNGTG	2 cut(s)	264, 432
PceI	AGGCCT	1 cut(s)	734
PdiI	GCCGGC	1 cut(s)	641
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	92
PflMI	CCANNNNNTGG	1 cut(s)	389
PfoI	TCCNGGA	1 cut(s)	371
PkrI	GCNGC	3 cut(s)	301, 318, 596
PluTI	GGCGCC	1 cut(s)	406
PsiI	TTATAA	1 cut(s)	9
Psp6I	CCWGG	3 cut(s)	31, 262, 371
PspEI	GGTNACC	1 cut(s)	193
PspGI	CCWGG	3 cut(s)	31, 262, 371
PspN4I	GGNNCC	1 cut(s)	404
PspPI	GGNCC	1 cut(s)	602
PvuII	CAGCTG	2 cut(s)	446, 608
RsaI	GTAC	3 cut(s)	115, 139, 658
RsaNI	GTAC	3 cut(s)	114, 138, 657
RseI	CAYNNNNRTG	2 cut(s)	264, 432
SatI	GCNGC	3 cut(s)	300, 317, 595
Sau3AI	GATC	2 cut(s)	163, 568
Sau96I	GGNCC	1 cut(s)	602
ScrFI	CCNGG	3 cut(s)	33, 264, 373
SduI	GDGCHC	2 cut(s)	335, 679
SexAI	ACCWGGT	1 cut(s)	31
SfaNI	GCATC	1 cut(s)	118
SfcI	CTRYAG	3 cut(s)	430, 460, 517
SfoI	GGCGCC	1 cut(s)	404
SgrAI	CRCCGGYG	1 cut(s)	44
SinI	GGWCC	1 cut(s)	602
SmiMI	CAYNNNNRTG	2 cut(s)	264, 432
Sse9I	AATT	2 cut(s)	22, 397
SseBI	AGGCCT	1 cut(s)	734
SsiI	CCGC	3 cut(s)	48, 577, 690
SspDI	GGCGCC	1 cut(s)	402
StuI	AGGCCT	1 cut(s)	734
StyD4I	CCNGG	3 cut(s)	31, 262, 371
StyI	CCWWGG	2 cut(s)	83, 770
TaaI	ACNGT	2 cut(s)	118, 137
TaiI	ACGT	1 cut(s)	220
TaqI	TCGA	2 cut(s)	142, 329
TaqII	GACCGA	1 cut(s)	212
TasI	AATT	2 cut(s)	22, 397
TfiI	GAWTC	1 cut(s)	92
TscAI	CASTG	1 cut(s)	285
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	3 cut(s)	299, 316, 594
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	231, 600
TspRI	CASTG	1 cut(s)	285
Van91I	CCANNNNNTGG	1 cut(s)	389
VneI	GTGCAC	1 cut(s)	675
VpaK11BI	GGWCC	1 cut(s)	602
XmnI	GAANNNNTTC	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.