Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0013691

Physical Location & Seq

Genomic Coordinates Forward (+)

2995492 .. 2996277

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG045200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCTTACAATGACTACGGCAATTACAGACCAGGTTACTCCACTGGCGGAGCTGGAGCTTACACCGACCAATGGGGAAATCCAAGGCAAAGTTCTCACCCAGGTGTTGTTGAGCCAGTGAGAGGCTACGGCTATGCTGCTGATAACTCATGGCAGCGCAGGTCTTCGAGCCCTGTCAGAGGTGGTTATGTTTATGCTGATCAACCCTCCAGGATTGCACCATCCAATGGTGTGAATTGGCGCCCACAGCCCCAGCAAACCGGACACTATAGTGGCACTTCAGCAGGCTATAATGACTATAATGACTACAGCAACAAGCCAAGTTACAAGCTTAGTGGAAAGACTGACAACTATGATGACCGCTACAGCAACAAGCCAAGTTACAAGCATAGTGGAAAGAGTGACAACTATGATGATCACTACCGCAAAAATGAAACTGGCAGCTATGGAACACCTGTCAACATGATATCAAACAGCCGGCCTAAGCCAAGCCGTACTGTATATTCTACTGCTGCACTCCCCGTTCGCGGTGATGGCAGGCTCACTCTTCCAACAGATGACATGGAGAGAGCCTTGCACTACTTGAAGGAAAGTGCAAAGCCTTCACCATGGCCACGAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

23.15

Weight (kDa)

9.36

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04001
malus_domestica	MD12G1233400.v1.1
prunus_persica	Prupe.6G336600_v2.0.a1 Prupe.6G336700_v2.0.a1
pyrus_communis	pycom04g19290 pycom12g21590
rosa_chinensis	RchiOBHm_Chr3g0452591
rosa_laevigata	RLG00000025581
rosa_multiflora	Rmu_sc0000608.1_g000023 Rmu_sc0028732.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429630
rosa_rugosa	Rorug02G0641500 Rorug02G0641500
rosa_samantha	Rh3AG044100 Rh3BG046200 Rh3CG044900 Rh3DG045200
rosa_wichuraiana	Rw3G003420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	240
AccB7I	CCANNNNNTGG	1 cut(s)	227
AccII	CGCG	1 cut(s)	528
AciI	CCGC	4 cut(s)	48, 361, 424, 528
AcoI	YGGCCR	1 cut(s)	611
AcuI	CTGAAG	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	241
AfaI	GTAC	1 cut(s)	496
AfiI	CCNNNNNNNGG	5 cut(s)	72, 122, 179, 227, 527
AgsI	TTSAA	1 cut(s)	586
AjnI	CCWGG	3 cut(s)	31, 100, 209
AjuI	GAANNNNNNNTTGG	2 cut(s)	76, 108
AleI	CACNNNNGTG	2 cut(s)	102, 270
AluBI	AGCT	4 cut(s)	53, 59, 331, 444
AluI	AGCT	4 cut(s)	53, 59, 331, 444
AoxI	GGCC	2 cut(s)	479, 611
ApeKI	GCWGC	4 cut(s)	137, 154, 441, 512
AspLEI	GCGC	2 cut(s)	159, 243
AsuHPI	GGTGA	3 cut(s)	89, 542, 597
BalI	TGGCCA	1 cut(s)	613
BanI	GGYRCC	1 cut(s)	240
BanII	GRGCYC	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	4 cut(s)	124, 166, 453, 499
BccI	CCATC	2 cut(s)	229, 527
BceAI	ACGGC	3 cut(s)	34, 145, 477
BciT130I	CCWGG	3 cut(s)	33, 102, 211
BclI	TGATCA	2 cut(s)	199, 415
BfmI	CTRYAG	3 cut(s)	268, 307, 364
BfoI	RGCGCY	1 cut(s)	244
BfuAI	ACCTGC	1 cut(s)	150
BisI	GCNGC	4 cut(s)	138, 155, 442, 513
BlsI	GCNGC	4 cut(s)	139, 156, 443, 514
Bme1390I	CCNGG	3 cut(s)	33, 102, 211
BmiI	GGNNCC	1 cut(s)	242
BmrFI	CCNGG	3 cut(s)	33, 102, 211
BpiI	GAAGAC	1 cut(s)	156
BpmI	CTGGAG	2 cut(s)	75, 193
Bpu10I	CCTNAGC	1 cut(s)	483
BsaHI	GRCGYC	1 cut(s)	241
BsaJI	CCNNGG	3 cut(s)	83, 100, 608
BsaWI	WCCGGW	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	5 cut(s)	72, 122, 179, 227, 527
Bse118I	RCCGGY	1 cut(s)	477
Bse1I	ACTGG	3 cut(s)	49, 116, 442
BseBI	CCWGG	3 cut(s)	33, 102, 211
BseDI	CCNNGG	3 cut(s)	83, 100, 608
BseGI	GGATG	1 cut(s)	221
BseLI	CCNNNNNNNGG	5 cut(s)	72, 122, 179, 227, 527
BseNI	ACTGG	3 cut(s)	49, 116, 442
BseXI	GCAGC	4 cut(s)	124, 166, 453, 499
BseYI	CCCAGC	1 cut(s)	252
BsgI	GTGCAG	1 cut(s)	498
Bsh1236I	CGCG	1 cut(s)	528
BshFI	GGCC	2 cut(s)	481, 613
BshNI	GGYRCC	1 cut(s)	240
BsiSI	CCGG	2 cut(s)	261, 478
BslI	CCNNNNNNNGG	5 cut(s)	72, 122, 179, 227, 527
BsnI	GGCC	2 cut(s)	481, 613
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	2 cut(s)	199, 415
Bsp19I	CCATGG	1 cut(s)	608
BspACI	CCGC	4 cut(s)	48, 361, 424, 528
BspANI	GGCC	2 cut(s)	481, 613
BspFNI	CGCG	1 cut(s)	528
BspLI	GGNNCC	1 cut(s)	242
BspMI	ACCTGC	1 cut(s)	150
BspT107I	GGYRCC	1 cut(s)	240
BsrFI	RCCGGY	1 cut(s)	477
BsrI	ACTGG	3 cut(s)	49, 116, 442
BssAI	RCCGGY	1 cut(s)	477
BssECI	CCNNGG	3 cut(s)	83, 100, 608
BssMI	GATC	2 cut(s)	199, 415
BssNI	GRCGYC	1 cut(s)	241
BssT1I	CCWWGG	2 cut(s)	83, 608
Bst2UI	CCWGG	3 cut(s)	33, 102, 211
Bst4CI	ACNGT	1 cut(s)	499
Bst6I	CTCTTC	1 cut(s)	552
BstACI	GRCGYC	1 cut(s)	241
BstC8I	GCNNGC	3 cut(s)	286, 479, 539
BstDEI	CTNAG	2 cut(s)	332, 483
BstDSI	CCRYGG	1 cut(s)	608
BstENI	CCTNNNNNAGG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	221
BstFNI	CGCG	1 cut(s)	528
BstH2I	RGCGCY	1 cut(s)	244
BstHHI	GCGC	2 cut(s)	159, 243
BstKTI	GATC	2 cut(s)	202, 418
BstMBI	GATC	2 cut(s)	199, 415
BstMWI	GCNNNNNNNGC	2 cut(s)	247, 534
BstNI	CCWGG	3 cut(s)	33, 102, 211
BstSCI	CCNGG	3 cut(s)	31, 100, 209
BstSFI	CTRYAG	3 cut(s)	268, 307, 364
BstUI	CGCG	1 cut(s)	528
BstV1I	GCAGC	4 cut(s)	124, 166, 453, 499
BstV2I	GAAGAC	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	481, 613
BtgI	CCRYGG	1 cut(s)	608
BtsCI	GGATG	1 cut(s)	221
BtsIMutI	CAGTG	2 cut(s)	42, 123
BveI	ACCTGC	1 cut(s)	150
Cac8I	GCNNGC	3 cut(s)	286, 479, 539
CfoI	GCGC	2 cut(s)	159, 243
Cfr10I	RCCGGY	1 cut(s)	477
CsiI	ACCWGGT	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	495
CspCI	CAANNNNNGTGG	4 cut(s)	316, 351, 373, 408
CviAII	CATG	4 cut(s)	150, 463, 562, 609
CviQI	GTAC	1 cut(s)	495
DdeI	CTNAG	2 cut(s)	332, 483
DinI	GGCGCC	1 cut(s)	242
DpnI	GATC	2 cut(s)	201, 417
DpnII	GATC	2 cut(s)	199, 415
EaeI	YGGCCR	1 cut(s)	611
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
EciI	GGCGGA	1 cut(s)	63
Eco130I	CCWWGG	2 cut(s)	83, 608
Eco24I	GRGCYC	1 cut(s)	173
Eco32I	GATATC	1 cut(s)	468
Eco57I	CTGAAG	1 cut(s)	264
EcoNI	CCTNNNNNAGG	1 cut(s)	177
EcoRII	CCWGG	3 cut(s)	31, 100, 209
EcoRV	GATATC	1 cut(s)	468
EcoT14I	CCWWGG	2 cut(s)	83, 608
EcoT38I	GRGCYC	1 cut(s)	173
EgeI	GGCGCC	1 cut(s)	242
EheI	GGCGCC	1 cut(s)	242
ErhI	CCWWGG	2 cut(s)	83, 608
FaeI	CATG	4 cut(s)	153, 466, 565, 612
FatI	CATG	4 cut(s)	149, 462, 561, 608
FbaI	TGATCA	2 cut(s)	199, 415
Fnu4HI	GCNGC	4 cut(s)	138, 155, 442, 513
FokI	GGATG	1 cut(s)	208
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	4 cut(s)	138, 155, 442, 513
GlaI	GCGC	2 cut(s)	158, 242
GluI	GCNGC	4 cut(s)	138, 155, 442, 513
GsaI	CCCAGC	1 cut(s)	256
GsuI	CTGGAG	2 cut(s)	75, 193
HaeII	RGCGCY	1 cut(s)	244
HaeIII	GGCC	2 cut(s)	481, 613
HapII	CCGG	2 cut(s)	261, 478
HhaI	GCGC	2 cut(s)	159, 243
Hin1I	GRCGYC	1 cut(s)	241
Hin1II	CATG	4 cut(s)	153, 466, 565, 612
Hin6I	GCGC	2 cut(s)	157, 241
HinP1I	GCGC	2 cut(s)	157, 241
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HindIII	AAGCTT	1 cut(s)	329
HpaII	CCGG	2 cut(s)	261, 478
HphI	GGTGA	3 cut(s)	89, 542, 597
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	1 cut(s)	179
Hpy8I	GTNNAC	1 cut(s)	460
HpyAV	CCTTC	2 cut(s)	580, 612
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4V	TGCA	4 cut(s)	218, 515, 577, 596
HpyF10VI	GCNNNNNNNGC	2 cut(s)	247, 534
HpyF3I	CTNAG	2 cut(s)	332, 483
Hsp92I	GRCGYC	1 cut(s)	241
Hsp92II	CATG	4 cut(s)	153, 466, 565, 612
HspAI	GCGC	2 cut(s)	157, 241
KasI	GGCGCC	1 cut(s)	240
KroI	GCCGGC	1 cut(s)	477
KroNI	GCCGGC	1 cut(s)	479
Ksp22I	TGATCA	2 cut(s)	199, 415
Kzo9I	GATC	2 cut(s)	199, 415
LmnI	GCTCC	2 cut(s)	50, 56
Lsp1109I	GCAGC	4 cut(s)	124, 166, 453, 499
MabI	ACCWGGT	1 cut(s)	31
MaeIII	GTNAC	4 cut(s)	35, 323, 380, 401
MalI	GATC	2 cut(s)	201, 417
MboI	GATC	2 cut(s)	199, 415
MboII	GAAGA	2 cut(s)	156, 539
MhlI	GDGCHC	1 cut(s)	173
MlsI	TGGCCA	1 cut(s)	613
MluCI	AATT	2 cut(s)	22, 235
MluNI	TGGCCA	1 cut(s)	613
Mly113I	GGCGCC	1 cut(s)	241
MmeI	TCCRAC	1 cut(s)	575
MnlI	CCTC	3 cut(s)	116, 173, 217
Mox20I	TGGCCA	1 cut(s)	613
MroNI	GCCGGC	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	613
MslI	CAYNNNNRTG	2 cut(s)	102, 270
Msp20I	TGGCCA	1 cut(s)	613
MspI	CCGG	2 cut(s)	261, 478
MspR9I	CCNGG	3 cut(s)	33, 102, 211
MvaI	CCWGG	3 cut(s)	33, 102, 211
MvnI	CGCG	1 cut(s)	528
MwoI	GCNNNNNNNGC	2 cut(s)	247, 534
NaeI	GCCGGC	1 cut(s)	479
NarI	GGCGCC	1 cut(s)	241
NcoI	CCATGG	1 cut(s)	608
NdeII	GATC	2 cut(s)	199, 415
NgoMIV	GCCGGC	1 cut(s)	477
NlaIII	CATG	4 cut(s)	153, 466, 565, 612
NlaIV	GGNNCC	1 cut(s)	242
NmuCI	GTSAC	1 cut(s)	401
OliI	CACNNNNGTG	2 cut(s)	102, 270
PdiI	GCCGGC	1 cut(s)	479
PflMI	CCANNNNNTGG	1 cut(s)	227
PfoI	TCCNGGA	1 cut(s)	209
PkrI	GCNGC	4 cut(s)	139, 156, 443, 514
PluTI	GGCGCC	1 cut(s)	244
Psp6I	CCWGG	3 cut(s)	31, 100, 209
PspFI	CCCAGC	1 cut(s)	252
PspGI	CCWGG	3 cut(s)	31, 100, 209
PspN4I	GGNNCC	1 cut(s)	242
RsaI	GTAC	1 cut(s)	496
RsaNI	GTAC	1 cut(s)	495
RseI	CAYNNNNRTG	2 cut(s)	102, 270
SatI	GCNGC	4 cut(s)	138, 155, 442, 513
Sau3AI	GATC	2 cut(s)	199, 415
ScrFI	CCNGG	3 cut(s)	33, 102, 211
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	9 cut(s)	37, 55, 61, 106, 164, 184, 333, 446, 457
SexAI	ACCWGGT	1 cut(s)	31
SfcI	CTRYAG	3 cut(s)	268, 307, 364
SfoI	GGCGCC	1 cut(s)	242
SmiMI	CAYNNNNRTG	2 cut(s)	102, 270
Sse9I	AATT	2 cut(s)	22, 235
SsiI	CCGC	4 cut(s)	48, 361, 424, 528
SspDI	GGCGCC	1 cut(s)	240
StyD4I	CCNGG	3 cut(s)	31, 100, 209
StyI	CCWWGG	2 cut(s)	83, 608
TaaI	ACNGT	1 cut(s)	499
TaqI	TCGA	1 cut(s)	167
TasI	AATT	2 cut(s)	22, 235
TscAI	CASTG	2 cut(s)	49, 123
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	4 cut(s)	137, 154, 441, 512
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	1 cut(s)	447
TspRI	CASTG	2 cut(s)	49, 123
Van91I	CCANNNNNTGG	1 cut(s)	227
XagI	CCTNNNNNAGG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.