Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0013691

Physical Location & Seq

Genomic Coordinates Reverse (-)

29234790 .. 29236145

Gene Structure 1356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G336600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCCGGCTATGATTACGGTTATAGATCAGGTTACTCTAACAGAAAGGGGGCAGGACCACACCCAAATGAATGGAGCAAGACAAGCTATACAGACGACGAGTGTCGGACAGTCATCGTTGATGCTGACGGAACACAAAGAACAATCATTGGTTGCACTCCCCTCCATAATCCAGGGGCCTATGTAACAAAAACTGAGACAATCATTCAGGAACGTATTCTCTCACCTGCGTTCCCGGCTGCATACAAGCATAGCTCTCCTCCCACAGTGGTTGTTGAACCAGTGAAACAGTACGGGTATGCTGATGACAAGTGGCGTAGGCCTTCAAGCCCTGTGAAAGGTTATGGTTATCCTGTTGATGATTACAACAAGCTGCACAAGCCTTCAAGCCCTGTGAAAGGTTATGGTTATGCTGCTGATGATCAAAGGTTGCGCAGGACTTCCAGCCCCGAACATGATTATCCGCGGGAAGTTGGTAATTTCCTCACCAAAGTCCACACTGAAGCAAGCCGTGATCAACCCTCTAGGGTTGGACCCATGAGCGGTGTAAACTGGCGCCAACCGCCCCAGCAAACCGGGCATAATAGCACTACAGGCTATGGTGATTATAGTGACTACAACAACAAACCATTGTACAAGCCAAATGGAAACACCAACTACGATGACTACCACCGCAAAAATGATAGTGGCAGCGTGGGACCAACCGTGATATCCAACGGTGCTAGGCCAATCCGTTCGACATGGGCTCCACCAGCTCCCGGTCGCGAGGGAAGACTTACCACCCCAACAGATGACATGGAAACAGCCTTGCGCTACTTGAAGGAAAGTGCAAAGCGAGATGAATATCAGACAGATGCTGCAAAGCGAAATGTCAGATTCAATGTGCCATCATGGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

300

Amino Acids

33.52

Weight (kDa)

9.04

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04001
malus_domestica	MD12G1233400.v1.1
prunus_persica	Prupe.6G336600_v2.0.a1 Prupe.6G336700_v2.0.a1
pyrus_communis	pycom04g19290 pycom12g21590
rosa_chinensis	RchiOBHm_Chr3g0452591
rosa_laevigata	RLG00000025581
rosa_multiflora	Rmu_sc0000608.1_g000023 Rmu_sc0028732.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429630
rosa_rugosa	Rorug02G0641500 Rorug02G0641500
rosa_samantha	Rh3AG044100 Rh3BG046200 Rh3CG044900 Rh3DG045200
rosa_wichuraiana	Rw3G003420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	235
Acc16I	TGCGCA	1 cut(s)	434
Acc36I	ACCTGC	1 cut(s)	235
AccB1I	GGYRCC	1 cut(s)	555
AccBSI	CCGCTC	1 cut(s)	543
AccII	CGCG	2 cut(s)	466, 765
AciI	CCGC	5 cut(s)	464, 466, 543, 563, 673
AcoI	YGGCCR	2 cut(s)	3, 893
AcuI	CTGAAG	1 cut(s)	522
AcyI	GRCGYC	1 cut(s)	556
AfaI	GTAC	2 cut(s)	293, 635
AfiI	CCNNNNNNNGG	4 cut(s)	338, 398, 542, 758
AgsI	TTSAA	5 cut(s)	278, 327, 387, 820, 880
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	4 cut(s)	87, 255, 373, 755
AluI	AGCT	4 cut(s)	87, 255, 373, 755
Alw26I	GTCTC	1 cut(s)	191
AlwNI	CAGNNNCTG	1 cut(s)	857
AoxI	GGCC	5 cut(s)	3, 177, 320, 725, 893
ApeKI	GCWGC	5 cut(s)	239, 373, 413, 690, 857
Asp700I	GAANNNNTTC	1 cut(s)	216
AspLEI	GCGC	3 cut(s)	435, 558, 813
AspS9I	GGNCC	4 cut(s)	56, 177, 533, 698
AsuC2I	CCSGG	3 cut(s)	236, 577, 759
AsuHPI	GGTGA	3 cut(s)	216, 478, 614
AvaII	GGWCC	3 cut(s)	56, 533, 698
BalI	TGGCCA	1 cut(s)	895
BanI	GGYRCC	1 cut(s)	555
BanII	GRGCYC	1 cut(s)	748
BbsI	GAAGAC	1 cut(s)	778
BbvI	GCAGC	5 cut(s)	226, 360, 400, 702, 844
BccI	CCATC	1 cut(s)	895
BceAI	ACGGC	1 cut(s)	495
BciT130I	CCWGG	1 cut(s)	174
BclI	TGATCA	2 cut(s)	421, 514
BcnI	CCSGG	3 cut(s)	236, 577, 759
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	2 cut(s)	525, 723
BfmI	CTRYAG	1 cut(s)	591
BfoI	RGCGCY	1 cut(s)	559
BfuAI	ACCTGC	1 cut(s)	235
BglI	GCCNNNNNGGC	1 cut(s)	892
BisI	GCNGC	5 cut(s)	240, 374, 414, 691, 858
BlsI	GCNGC	5 cut(s)	241, 375, 415, 692, 859
Bme1390I	CCNGG	4 cut(s)	174, 236, 577, 759
Bme18I	GGWCC	3 cut(s)	56, 533, 698
BmgT120I	GGNCC	4 cut(s)	56, 177, 533, 698
BmiI	GGNNCC	5 cut(s)	178, 535, 557, 699, 747
BmrFI	CCNGG	4 cut(s)	174, 236, 577, 759
BmsI	GCATC	2 cut(s)	112, 844
BoxI	GACNNNNGTC	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	778
BpuMI	CCSGG	3 cut(s)	236, 577, 759
BsaBI	GATNNNNATC	1 cut(s)	843
BsaHI	GRCGYC	1 cut(s)	556
BsaJI	CCNNGG	2 cut(s)	173, 464
BsaXI	ACNNNNNCTCC	2 cut(s)	730, 760
Bsc4I	CCNNNNNNNGG	4 cut(s)	338, 398, 542, 758
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	2 cut(s)	281, 557
Bse8I	GATNNNNATC	1 cut(s)	843
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	2 cut(s)	173, 464
BseJI	GATNNNNATC	1 cut(s)	843
BseLI	CCNNNNNNNGG	4 cut(s)	338, 398, 542, 758
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	2 cut(s)	281, 557
BseRI	GAGGAG	1 cut(s)	249
BseXI	GCAGC	5 cut(s)	226, 360, 400, 702, 844
BseYI	CCCAGC	1 cut(s)	567
BsgI	GTGCAG	1 cut(s)	359
Bsh1236I	CGCG	2 cut(s)	466, 765
Bsh1285I	CGRYCG	1 cut(s)	763
BshFI	GGCC	5 cut(s)	5, 179, 322, 727, 895
BshNI	GGYRCC	1 cut(s)	555
BsiEI	CGRYCG	1 cut(s)	763
BsiSI	CCGG	4 cut(s)	6, 236, 576, 759
BslFI	GGGAC	1 cut(s)	711
BslI	CCNNNNNNNGG	4 cut(s)	338, 398, 542, 758
BsmAI	GTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	711
BsnI	GGCC	5 cut(s)	5, 179, 322, 727, 895
Bsp1286I	GDGCHC	1 cut(s)	748
Bsp1407I	TGTACA	1 cut(s)	633
Bsp143I	GATC	3 cut(s)	26, 421, 514
Bsp68I	TCGCGA	1 cut(s)	765
BspACI	CCGC	5 cut(s)	464, 466, 543, 563, 673
BspANI	GGCC	5 cut(s)	5, 179, 322, 727, 895
BspCNI	CTCAG	1 cut(s)	187
BspFNI	CGCG	2 cut(s)	466, 765
BspLI	GGNNCC	5 cut(s)	178, 535, 557, 699, 747
BspMI	ACCTGC	1 cut(s)	235
BspT107I	GGYRCC	1 cut(s)	555
BsrBI	CCGCTC	1 cut(s)	543
BsrFI	RCCGGY	1 cut(s)	5
BsrGI	TGTACA	1 cut(s)	633
BsrI	ACTGG	2 cut(s)	281, 557
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	2 cut(s)	173, 464
BssMI	GATC	3 cut(s)	26, 421, 514
BssNI	GRCGYC	1 cut(s)	556
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	6 cut(s)	20, 112, 268, 291, 706, 719
BstACI	GRCGYC	1 cut(s)	556
BstAUI	TGTACA	1 cut(s)	633
BstC8I	GCNNGC	2 cut(s)	7, 508
BstDEI	CTNAG	1 cut(s)	195
BstDSI	CCRYGG	1 cut(s)	464
BstENI	CCTNNNNNAGG	2 cut(s)	336, 396
BstFNI	CGCG	2 cut(s)	466, 765
BstH2I	RGCGCY	1 cut(s)	559
BstHHI	GCGC	3 cut(s)	435, 558, 813
BstKTI	GATC	3 cut(s)	29, 424, 517
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	3 cut(s)	26, 421, 514
BstMCI	CGRYCG	1 cut(s)	763
BstMWI	GCNNNNNNNGC	8 cut(s)	84, 236, 379, 562, 577, 594, 752, 892
BstNI	CCWGG	1 cut(s)	174
BstPAI	GACNNNNGTC	1 cut(s)	102
BstSCI	CCNGG	4 cut(s)	172, 234, 575, 757
BstSFI	CTRYAG	1 cut(s)	591
BstUI	CGCG	2 cut(s)	466, 765
BstV1I	GCAGC	5 cut(s)	226, 360, 400, 702, 844
BstV2I	GAAGAC	1 cut(s)	778
BstXI	CCANNNNNNTGG	1 cut(s)	72
BsuRI	GGCC	5 cut(s)	5, 179, 322, 727, 895
BtgI	CCRYGG	1 cut(s)	464
BtsIMutI	CAGTG	3 cut(s)	273, 288, 498
BtuMI	TCGCGA	1 cut(s)	765
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	2 cut(s)	7, 508
CaiI	CAGNNNCTG	1 cut(s)	857
CfoI	GCGC	3 cut(s)	435, 558, 813
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	4 cut(s)	56, 177, 533, 698
Cfr42I	CCGCGG	1 cut(s)	467
Csp6I	GTAC	2 cut(s)	292, 634
CspCI	CAANNNNNGTGG	2 cut(s)	253, 288
CviAII	CATG	6 cut(s)	455, 538, 741, 796, 891, 897
CviQI	GTAC	2 cut(s)	292, 634
DdeI	CTNAG	1 cut(s)	195
DinI	GGCGCC	1 cut(s)	557
DpnI	GATC	3 cut(s)	28, 423, 516
DpnII	GATC	3 cut(s)	26, 421, 514
EaeI	YGGCCR	2 cut(s)	3, 893
Eco147I	AGGCCT	1 cut(s)	322
Eco24I	GRGCYC	1 cut(s)	748
Eco32I	GATATC	1 cut(s)	711
Eco47I	GGWCC	3 cut(s)	56, 533, 698
Eco57I	CTGAAG	1 cut(s)	522
EcoNI	CCTNNNNNAGG	2 cut(s)	336, 396
EcoO109I	RGGNCCY	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	172
EcoRV	GATATC	1 cut(s)	711
EcoT38I	GRGCYC	1 cut(s)	748
EgeI	GGCGCC	1 cut(s)	557
EheI	GGCGCC	1 cut(s)	557
FaeI	CATG	6 cut(s)	458, 541, 744, 799, 894, 900
FaqI	GGGAC	1 cut(s)	711
FatI	CATG	6 cut(s)	454, 537, 740, 795, 890, 896
FauI	CCCGC	1 cut(s)	459
FbaI	TGATCA	2 cut(s)	421, 514
Fnu4HI	GCNGC	5 cut(s)	240, 374, 414, 691, 858
FriOI	GRGCYC	1 cut(s)	748
Fsp4HI	GCNGC	5 cut(s)	240, 374, 414, 691, 858
FspBI	CTAG	2 cut(s)	525, 723
FspI	TGCGCA	1 cut(s)	434
GlaI	GCGC	3 cut(s)	434, 557, 812
GluI	GCNGC	5 cut(s)	240, 374, 414, 691, 858
GsaI	CCCAGC	1 cut(s)	571
HaeII	RGCGCY	1 cut(s)	559
HaeIII	GGCC	5 cut(s)	5, 179, 322, 727, 895
HapII	CCGG	4 cut(s)	6, 236, 576, 759
HhaI	GCGC	3 cut(s)	435, 558, 813
Hin1I	GRCGYC	1 cut(s)	556
Hin1II	CATG	6 cut(s)	458, 541, 744, 799, 894, 900
Hin6I	GCGC	3 cut(s)	433, 556, 811
HinP1I	GCGC	3 cut(s)	433, 556, 811
HinfI	GANTC	1 cut(s)	876
HpaII	CCGG	4 cut(s)	6, 236, 576, 759
HphI	GGTGA	3 cut(s)	216, 478, 614
Hpy166II	GTNNAC	2 cut(s)	496, 550
Hpy188I	TCNGA	3 cut(s)	108, 849, 875
Hpy188III	TCNNGA	2 cut(s)	209, 764
Hpy8I	GTNNAC	2 cut(s)	496, 550
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	3 cut(s)	333, 393, 814
HpyCH4III	ACNGT	6 cut(s)	20, 112, 268, 291, 706, 719
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	5 cut(s)	156, 242, 376, 830, 860
HpyF10VI	GCNNNNNNNGC	8 cut(s)	84, 236, 379, 562, 577, 594, 752, 892
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	1 cut(s)	214
Hsp92I	GRCGYC	1 cut(s)	556
Hsp92II	CATG	6 cut(s)	458, 541, 744, 799, 894, 900
HspAI	GCGC	3 cut(s)	433, 556, 811
KasI	GGCGCC	1 cut(s)	555
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Ksp22I	TGATCA	2 cut(s)	421, 514
KspI	CCGCGG	1 cut(s)	467
Kzo9I	GATC	3 cut(s)	26, 421, 514
LmnI	GCTCC	3 cut(s)	75, 751, 760
Lsp1109I	GCAGC	5 cut(s)	226, 360, 400, 702, 844
LweI	GCATC	2 cut(s)	112, 844
MaeI	CTAG	2 cut(s)	525, 723
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	3 cut(s)	32, 184, 611
MalI	GATC	3 cut(s)	28, 423, 516
MbiI	CCGCTC	1 cut(s)	543
MboI	GATC	3 cut(s)	26, 421, 514
MboII	GAAGA	1 cut(s)	783
MhlI	GDGCHC	1 cut(s)	748
MlsI	TGGCCA	1 cut(s)	895
MluCI	AATT	1 cut(s)	478
MluNI	TGGCCA	1 cut(s)	895
Mly113I	GGCGCC	1 cut(s)	556
MmeI	TCCRAC	3 cut(s)	86, 511, 738
MnlI	CCTC	5 cut(s)	173, 270, 494, 532, 760
Mox20I	TGGCCA	1 cut(s)	895
MroNI	GCCGGC	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	216
MscI	TGGCCA	1 cut(s)	895
MslI	CAYNNNNRTG	2 cut(s)	66, 895
Msp20I	TGGCCA	1 cut(s)	895
MspA1I	CMGCKG	1 cut(s)	466
MspI	CCGG	4 cut(s)	6, 236, 576, 759
MspR9I	CCNGG	4 cut(s)	174, 236, 577, 759
MvaI	CCWGG	1 cut(s)	174
MvnI	CGCG	2 cut(s)	466, 765
MwoI	GCNNNNNNNGC	8 cut(s)	84, 236, 379, 562, 577, 594, 752, 892
NaeI	GCCGGC	1 cut(s)	7
NarI	GGCGCC	1 cut(s)	556
NciI	CCSGG	3 cut(s)	236, 577, 759
NdeII	GATC	3 cut(s)	26, 421, 514
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	6 cut(s)	458, 541, 744, 799, 894, 900
NlaIV	GGNNCC	5 cut(s)	178, 535, 557, 699, 747
NmuCI	GTSAC	1 cut(s)	611
NruI	TCGCGA	1 cut(s)	765
NsbI	TGCGCA	1 cut(s)	434
PaqCI	CACCTGC	1 cut(s)	235
PceI	AGGCCT	1 cut(s)	322
PdiI	GCCGGC	1 cut(s)	7
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	876
PkrI	GCNGC	5 cut(s)	241, 375, 415, 692, 859
PluTI	GGCGCC	1 cut(s)	559
PshAI	GACNNNNGTC	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	172
PspFI	CCCAGC	1 cut(s)	567
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	5 cut(s)	178, 535, 557, 699, 747
PspPI	GGNCC	4 cut(s)	56, 177, 533, 698
PstNI	CAGNNNCTG	1 cut(s)	857
RruI	TCGCGA	1 cut(s)	765
RsaI	GTAC	2 cut(s)	293, 635
RsaNI	GTAC	2 cut(s)	292, 634
RseI	CAYNNNNRTG	2 cut(s)	66, 895
SacII	CCGCGG	1 cut(s)	467
SatI	GCNGC	5 cut(s)	240, 374, 414, 691, 858
Sau3AI	GATC	3 cut(s)	26, 421, 514
Sau96I	GGNCC	4 cut(s)	56, 177, 533, 698
ScrFI	CCNGG	4 cut(s)	174, 236, 577, 759
SduI	GDGCHC	1 cut(s)	748
SfaNI	GCATC	2 cut(s)	112, 844
SfcI	CTRYAG	1 cut(s)	591
SfoI	GGCGCC	1 cut(s)	557
Sfr303I	CCGCGG	1 cut(s)	467
SgrBI	CCGCGG	1 cut(s)	467
SinI	GGWCC	3 cut(s)	56, 533, 698
SmiMI	CAYNNNNRTG	2 cut(s)	66, 895
Sse9I	AATT	1 cut(s)	478
SseBI	AGGCCT	1 cut(s)	322
SsiI	CCGC	5 cut(s)	464, 466, 543, 563, 673
SspDI	GGCGCC	1 cut(s)	555
SspMI	CTAG	2 cut(s)	525, 723
StuI	AGGCCT	1 cut(s)	322
StyD4I	CCNGG	4 cut(s)	172, 234, 575, 757
TaaI	ACNGT	6 cut(s)	20, 112, 268, 291, 706, 719
TaiI	ACGT	1 cut(s)	217
TaqI	TCGA	1 cut(s)	737
TasI	AATT	1 cut(s)	478
TatI	WGTACW	1 cut(s)	633
TfiI	GAWTC	1 cut(s)	876
TscAI	CASTG	3 cut(s)	273, 288, 505
TseFI	GTSAC	1 cut(s)	611
TseI	GCWGC	5 cut(s)	239, 373, 413, 690, 857
Tsp45I	GTSAC	1 cut(s)	611
TspDTI	ATGAA	2 cut(s)	84, 855
TspGWI	ACGGA	2 cut(s)	144, 722
TspRI	CASTG	3 cut(s)	273, 288, 505
VpaK11BI	GGWCC	3 cut(s)	56, 533, 698
XagI	CCTNNNNNAGG	2 cut(s)	336, 396
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	2 cut(s)	525, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.