Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0013691

Physical Location & Seq

Genomic Coordinates Reverse (-)

30918580 .. 30920243

Gene Structure 1664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1233400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGGCTGGTTATGATCACAACTATAGATCTGGTTACTCTAATGGCACGGGAGGAGGACCACACACCAATAAATGGAACAAGACAAGCTATGCAGATGATGAGTGCCGCACAATCATCGTTGGTGCTGATGGAACACGAAGAACAATCATTGGTTGCGCTCCCTTCCAGCAACAAGGGGGCTATGTTATGAAAACTGAGACAATTATTCATGAACGTATTCTCTCACCTGCAAACGAATACGGGTATGCTGATGACTGGCGTAGGCCTTCTAGCCCTCCTTCAAGCCCTGCGAAAGGGTATGGTTATGCTGTTGCTGATCCCAAGCTGCATAGGCCTTCAAGCCCCCCAAAAAATTATGGTTACGCTGTTGGTGATCAATACCCGCGTAGGCCTTCAAGTCCCCCAAAAAGTTATGCTGTTGGTAGGCCTTCAAGCCCCCCCAAAAGCTATGGTGTTGGTAGGCGTTCAAGCCCCCCAAAAAGTTATGCTGTTGGTAGACCTTCAAGCCCCCCCAAAAGTTATGCTGTTGGTAGGCCTTCAAGCCCTCCCAAAAGCTATGCTGTTGGTAGGCGTTCAAGCCCCCCAAAAAGTTATGCTGTTGGTAGGCCTTCAAGCCCCCCCAAAAGTTATGCTGTTGGTAGGCCTTCAAGCCCCGCAAAAAGTTACGCTGTTGGTAGGCCTTCAAGCCCCGCAAAAAGTTACGCTGTTGGTAGGCCTTCAAGCCCCCCAAAAACTTATGCTGTTGGTGATCGCTACCCTCGTAAGCCTTCAAGTCCCGTGAAAAGTTATGGCTACTCAGCTGATCATCAACAGCTGCATAGACCTTCCAGCCCTGAAGATGATTATCCGCGAGAAGTTGGTGATTTCCTGACCAAAGTCCAGACTGAAGCAAGCCGTGACCAGCGTGCAAATAGGCATCAACCAGCCCCGAAAGCTGCACATAATGATACTTATGGTGACTATAGTGACTACAACAAAAAAACATCCTACAAGCCAAACGGAAACACCATTCGCAATGACAACCATGATGACTACCCCCCCAAATATTACAGTGACATGGGACCAAACACAGTGACAAATGGTGGCCACCAGCCTAGGCCAAGCCGTCCAGCATGGAATCCACCACCAAGCCGTCCAGCATGGACTCCGCCAAGCCGTGAGGGCAGACTCAGCAGTGCAACAGATGACATAGAGACAGCCCTACGGTTCTTGAAGGAGAGTGTAATGTCTTCATCTGCCGCAGCTACTACGCCGCAATACTCTCAATACTCGACCGTGCCAAAACATGACGAGTATCCCACGGATGCTACGAAAAGAAATGCCACATTCAATGCGCCATCTTGGCCACGAACAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

453

Amino Acids

49.46

Weight (kDa)

9.82

Isoelectric Point (pI)

79.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04001
malus_domestica	MD12G1233400.v1.1
prunus_persica	Prupe.6G336600_v2.0.a1 Prupe.6G336700_v2.0.a1
pyrus_communis	pycom04g19290 pycom12g21590
rosa_chinensis	RchiOBHm_Chr3g0452591
rosa_laevigata	RLG00000025581
rosa_multiflora	Rmu_sc0000608.1_g000023 Rmu_sc0028732.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429630
rosa_rugosa	Rorug02G0641500 Rorug02G0641500
rosa_samantha	Rh3AG044100 Rh3BG046200 Rh3CG044900 Rh3DG045200
rosa_wichuraiana	Rw3G003420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	235
Acc36I	ACCTGC	1 cut(s)	235
AccB7I	CCANNNNNTGG	1 cut(s)	72
AccI	GTMKAC	1 cut(s)	496
AccII	CGCG	2 cut(s)	385, 850
AciI	CCGC	8 cut(s)	106, 383, 654, 690, 848, 1148, 1239, 1253
AclWI	GGATC	1 cut(s)	311
AcoI	YGGCCR	2 cut(s)	1084, 1343
AcuI	CTGAAG	2 cut(s)	855, 906
AfiI	CCNNNNNNNGG	2 cut(s)	72, 293
AluBI	AGCT	8 cut(s)	87, 325, 447, 555, 800, 814, 935, 1244
AluI	AGCT	8 cut(s)	87, 325, 447, 555, 800, 814, 935, 1244
Alw26I	GTCTC	2 cut(s)	191, 1187
AlwI	GGATC	1 cut(s)	311
ApeKI	GCWGC	4 cut(s)	325, 814, 935, 1241
Asp700I	GAANNNNTTC	1 cut(s)	216
AspA2I	CCTAGG	1 cut(s)	1094
AspLEI	GCGC	2 cut(s)	158, 1336
AspS9I	GGNCC	2 cut(s)	56, 1061
AsuHPI	GGTGA	5 cut(s)	216, 383, 758, 872, 968
AvaII	GGWCC	2 cut(s)	56, 1061
AvrII	CCTAGG	1 cut(s)	1094
BalI	TGGCCA	2 cut(s)	1086, 1345
BbsI	GAAGAC	1 cut(s)	1221
BbvI	GCAGC	4 cut(s)	312, 801, 922, 1253
BccI	CCATC	2 cut(s)	122, 1345
BceAI	ACGGC	4 cut(s)	879, 1089, 1116, 1140
BcgI	CGANNNNNNTGC	2 cut(s)	97, 131
BciVI	GTATCC	1 cut(s)	1305
BclI	TGATCA	3 cut(s)	13, 373, 802
BcoDI	GTCTC	2 cut(s)	191, 1187
BfaI	CTAG	2 cut(s)	270, 1095
BfmI	CTRYAG	2 cut(s)	22, 961
BfuAI	ACCTGC	1 cut(s)	235
BfuI	GTATCC	1 cut(s)	1305
BglI	GCCNNNNNGGC	2 cut(s)	1161, 1342
BglII	AGATCT	1 cut(s)	26
BisI	GCNGC	7 cut(s)	106, 326, 815, 936, 1239, 1242, 1253
BlnI	CCTAGG	1 cut(s)	1094
BlsI	GCNGC	7 cut(s)	107, 327, 816, 937, 1240, 1243, 1254
Bme18I	GGWCC	2 cut(s)	56, 1061
BmgT120I	GGNCC	2 cut(s)	56, 1061
BmiI	GGNNCC	1 cut(s)	1062
BmsI	GCATC	2 cut(s)	925, 1294
BoxI	GACNNNNGTC	1 cut(s)	875
BpiI	GAAGAC	1 cut(s)	1221
BsaBI	GATNNNNATC	1 cut(s)	843
BsaJI	CCNNGG	2 cut(s)	1094, 1299
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 293
Bse1I	ACTGG	1 cut(s)	260
Bse3DI	GCAATG	1 cut(s)	1021
Bse8I	GATNNNNATC	1 cut(s)	843
BseDI	CCNNGG	2 cut(s)	1094, 1299
BseGI	GGATG	2 cut(s)	983, 1309
BseJI	GATNNNNATC	1 cut(s)	843
BseLI	CCNNNNNNNGG	2 cut(s)	72, 293
BseMI	GCAATG	1 cut(s)	1021
BseMII	CTCAG	3 cut(s)	186, 810, 1183
BseNI	ACTGG	1 cut(s)	260
BseRI	GAGGAG	1 cut(s)	66
BseXI	GCAGC	4 cut(s)	312, 801, 922, 1253
BsgI	GTGCAG	1 cut(s)	921
Bsh1236I	CGCG	2 cut(s)	385, 850
Bsh1285I	CGRYCG	1 cut(s)	1275
BsiEI	CGRYCG	1 cut(s)	1275
BslFI	GGGAC	3 cut(s)	384, 759, 1074
BslI	CCNNNNNNNGG	2 cut(s)	72, 293
BsmAI	GTCTC	2 cut(s)	191, 1187
BsmFI	GGGAC	3 cut(s)	384, 759, 1074
Bsp143I	GATC	6 cut(s)	13, 26, 316, 373, 748, 802
BspACI	CCGC	8 cut(s)	106, 383, 654, 690, 848, 1148, 1239, 1253
BspCNI	CTCAG	3 cut(s)	187, 809, 1182
BspFNI	CGCG	2 cut(s)	385, 850
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	1062
BspMI	ACCTGC	1 cut(s)	235
BspPI	GGATC	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	1021
BsrI	ACTGG	1 cut(s)	260
BssECI	CCNNGG	2 cut(s)	1094, 1299
BssMI	GATC	6 cut(s)	13, 26, 316, 373, 748, 802
BssT1I	CCWWGG	1 cut(s)	1094
Bst4CI	ACNGT	4 cut(s)	1052, 1072, 1206, 1276
BstC8I	GCNNGC	2 cut(s)	892, 906
BstDEI	CTNAG	3 cut(s)	195, 796, 1169
BstDSI	CCRYGG	1 cut(s)	1299
BstENI	CCTNNNNNAGG	1 cut(s)	291
BstF5I	GGATG	2 cut(s)	983, 1309
BstFNI	CGCG	2 cut(s)	385, 850
BstHHI	GCGC	2 cut(s)	158, 1336
BstKTI	GATC	6 cut(s)	16, 29, 319, 376, 751, 805
BstMAI	GTCTC	2 cut(s)	191, 1187
BstMBI	GATC	6 cut(s)	13, 26, 316, 373, 748, 802
BstMCI	CGRYCG	1 cut(s)	1275
BstMWI	GCNNNNNNNGC	5 cut(s)	331, 932, 1161, 1170, 1342
BstPAI	GACNNNNGTC	1 cut(s)	875
BstSFI	CTRYAG	2 cut(s)	22, 961
BstUI	CGCG	2 cut(s)	385, 850
BstV1I	GCAGC	4 cut(s)	312, 801, 922, 1253
BstV2I	GAAGAC	1 cut(s)	1221
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
BsuI	GTATCC	1 cut(s)	1305
BtgI	CCRYGG	1 cut(s)	1299
BtsCI	GGATG	2 cut(s)	983, 1309
BtsI	GCAGTG	1 cut(s)	1180
BtsIMutI	CAGTG	3 cut(s)	1057, 1077, 1180
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	2 cut(s)	892, 906
CciI	TCATGA	1 cut(s)	208
CfoI	GCGC	2 cut(s)	158, 1336
Cfr13I	GGNCC	2 cut(s)	56, 1061
CviAII	CATG	6 cut(s)	209, 1025, 1057, 1113, 1140, 1286
DdeI	CTNAG	3 cut(s)	195, 796, 1169
DpnI	GATC	6 cut(s)	15, 28, 318, 375, 750, 804
DpnII	GATC	6 cut(s)	13, 26, 316, 373, 748, 802
EaeI	YGGCCR	2 cut(s)	1084, 1343
EciI	GGCGGA	1 cut(s)	1137
Eco130I	CCWWGG	1 cut(s)	1094
Eco147I	AGGCCT	9 cut(s)	265, 334, 391, 427, 535, 607, 643, 679, 715
Eco47I	GGWCC	2 cut(s)	56, 1061
Eco57I	CTGAAG	2 cut(s)	855, 906
EcoNI	CCTNNNNNAGG	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	1094
ErhI	CCWWGG	1 cut(s)	1094
FaeI	CATG	6 cut(s)	212, 1028, 1060, 1116, 1143, 1289
FaqI	GGGAC	3 cut(s)	384, 759, 1074
FatI	CATG	6 cut(s)	208, 1024, 1056, 1112, 1139, 1285
FauI	CCCGC	3 cut(s)	390, 661, 697
FbaI	TGATCA	3 cut(s)	13, 373, 802
FblI	GTMKAC	1 cut(s)	496
Fnu4HI	GCNGC	7 cut(s)	106, 326, 815, 936, 1239, 1242, 1253
FokI	GGATG	2 cut(s)	970, 1316
Fsp4HI	GCNGC	7 cut(s)	106, 326, 815, 936, 1239, 1242, 1253
FspBI	CTAG	2 cut(s)	270, 1095
GlaI	GCGC	2 cut(s)	157, 1335
GluI	GCNGC	7 cut(s)	106, 326, 815, 936, 1239, 1242, 1253
HhaI	GCGC	2 cut(s)	158, 1336
Hin1II	CATG	6 cut(s)	212, 1028, 1060, 1116, 1143, 1289
Hin6I	GCGC	2 cut(s)	156, 1334
HinP1I	GCGC	2 cut(s)	156, 1334
HinfI	GANTC	3 cut(s)	1117, 1144, 1167
HphI	GGTGA	5 cut(s)	216, 383, 758, 872, 968
Hpy166II	GTNNAC	1 cut(s)	497
Hpy188III	TCNNGA	4 cut(s)	209, 868, 880, 1210
Hpy8I	GTNNAC	1 cut(s)	497
HpyCH4III	ACNGT	4 cut(s)	1052, 1072, 1206, 1276
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	7 cut(s)	92, 230, 328, 817, 908, 938, 1178
HpyF10VI	GCNNNNNNNGC	5 cut(s)	331, 932, 1161, 1170, 1342
HpyF3I	CTNAG	3 cut(s)	195, 796, 1169
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	6 cut(s)	212, 1028, 1060, 1116, 1143, 1289
HspAI	GCGC	2 cut(s)	156, 1334
Ksp22I	TGATCA	3 cut(s)	13, 373, 802
Kzo9I	GATC	6 cut(s)	13, 26, 316, 373, 748, 802
LmnI	GCTCC	1 cut(s)	163
Lsp1109I	GCAGC	4 cut(s)	312, 801, 922, 1253
LweI	GCATC	2 cut(s)	925, 1294
MaeI	CTAG	2 cut(s)	270, 1095
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	9 cut(s)	32, 359, 662, 698, 896, 956, 965, 1052, 1072
MalI	GATC	6 cut(s)	15, 28, 318, 375, 750, 804
MboI	GATC	6 cut(s)	13, 26, 316, 373, 748, 802
MboII	GAAGA	3 cut(s)	150, 848, 1221
MflI	RGATCY	1 cut(s)	26
MlsI	TGGCCA	2 cut(s)	1086, 1345
MluCI	AATT	2 cut(s)	201, 352
MluNI	TGGCCA	2 cut(s)	1086, 1345
MlyI	GAGTC	2 cut(s)	1138, 1161
MnlI	CCTC	6 cut(s)	44, 47, 285, 555, 768, 1153
Mox20I	TGGCCA	2 cut(s)	1086, 1345
MroXI	GAANNNNTTC	1 cut(s)	216
MscI	TGGCCA	2 cut(s)	1086, 1345
Msp20I	TGGCCA	2 cut(s)	1086, 1345
MspA1I	CMGCKG	2 cut(s)	800, 814
MvnI	CGCG	2 cut(s)	385, 850
MwoI	GCNNNNNNNGC	5 cut(s)	331, 932, 1161, 1170, 1342
NdeII	GATC	6 cut(s)	13, 26, 316, 373, 748, 802
NlaIII	CATG	6 cut(s)	212, 1028, 1060, 1116, 1143, 1289
NlaIV	GGNNCC	1 cut(s)	1062
NmuCI	GTSAC	5 cut(s)	896, 956, 965, 1052, 1072
PagI	TCATGA	1 cut(s)	208
PaqCI	CACCTGC	1 cut(s)	235
PceI	AGGCCT	9 cut(s)	265, 334, 391, 427, 535, 607, 643, 679, 715
PcsI	WCGNNNNNNNCGW	2 cut(s)	757, 1307
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	1117
PflMI	CCANNNNNTGG	1 cut(s)	72
PkrI	GCNGC	7 cut(s)	107, 327, 816, 937, 1240, 1243, 1254
PleI	GAGTC	2 cut(s)	1138, 1161
PpsI	GAGTC	2 cut(s)	1138, 1161
PshAI	GACNNNNGTC	1 cut(s)	875
PspN4I	GGNNCC	1 cut(s)	1062
PspPI	GGNCC	2 cut(s)	56, 1061
PsuI	RGATCY	1 cut(s)	26
PvuII	CAGCTG	2 cut(s)	800, 814
SatI	GCNGC	7 cut(s)	106, 326, 815, 936, 1239, 1242, 1253
Sau3AI	GATC	6 cut(s)	13, 26, 316, 373, 748, 802
Sau96I	GGNCC	2 cut(s)	56, 1061
SchI	GAGTC	2 cut(s)	1138, 1161
SfaNI	GCATC	2 cut(s)	925, 1294
SfcI	CTRYAG	2 cut(s)	22, 961
SinI	GGWCC	2 cut(s)	56, 1061
Sse9I	AATT	2 cut(s)	201, 352
SseBI	AGGCCT	9 cut(s)	265, 334, 391, 427, 535, 607, 643, 679, 715
SsiI	CCGC	8 cut(s)	106, 383, 654, 690, 848, 1148, 1239, 1253
SspI	AATATT	1 cut(s)	1046
SspMI	CTAG	2 cut(s)	270, 1095
StuI	AGGCCT	9 cut(s)	265, 334, 391, 427, 535, 607, 643, 679, 715
StyI	CCWWGG	1 cut(s)	1094
TaaI	ACNGT	4 cut(s)	1052, 1072, 1206, 1276
TaiI	ACGT	1 cut(s)	217
TaqI	TCGA	1 cut(s)	1271
TasI	AATT	2 cut(s)	201, 352
TauI	GCSGC	3 cut(s)	108, 1241, 1255
TfiI	GAWTC	1 cut(s)	1117
TscAI	CASTG	3 cut(s)	1057, 1077, 1180
TseFI	GTSAC	5 cut(s)	896, 956, 965, 1052, 1072
TseI	GCWGC	4 cut(s)	325, 814, 935, 1241
Tsp45I	GTSAC	5 cut(s)	896, 956, 965, 1052, 1072
TspDTI	ATGAA	4 cut(s)	197, 203, 225, 1221
TspGWI	ACGGA	2 cut(s)	1014, 1316
TspRI	CASTG	3 cut(s)	1057, 1077, 1180
Van91I	CCANNNNNTGG	1 cut(s)	72
VpaK11BI	GGWCC	2 cut(s)	56, 1061
XagI	CCTNNNNNAGG	1 cut(s)	291
XmaJI	CCTAGG	1 cut(s)	1094
XmiI	GTMKAC	1 cut(s)	496
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	2 cut(s)	270, 1095

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.