Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0013691

Physical Location & Seq

Genomic Coordinates Reverse (-)

29237394 .. 29238530

Gene Structure 1137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G336700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCCGGCCATGATTACAGCTACAGATCAGGTTACTCTACCGGCAACGGGGTAGGATCGTATACTGACCAATGGGGCCAAACAAGGCATGGCTCTCCTCCACTTGTTGAGCCAGTGAGAAATTACGGCTATGCTGCTGATGACAATTGGCGTAGGCCTCCAAGCCCACCACGACACGCCATTGATGGCTTCCACACCAGAATCCACACTGATGCTAGCCGTGATCCTAGGGTTGGACCCTTCAATGGCATTACCTGGGGCCAACAACCCAATCAAATTGGATACAATGGAACTACGGGCTATGGTGGCTATAGTGACTACAGCAACAACACATTGTACAAGCCTAATGGAAACACCATTCGGAATGATAACTATGACGACTACCACCACAACCGCAAACATGATAGTGTCATGGGGCCAATCAATCTGACATCACACGGTGGCTACCACGGTAAGTCAAGCCATTCAACATGGACTTCTACACTTCCGGTTCGTGGTGATGGAAGACTCAGCATTCCAACAGATGACATGGAGAGGGCCCTGCACTACTTGAAGGAGAGTGCAAAGTCTTCAGCATGGCCAAGAACAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

22.01

Weight (kDa)

8.74

Isoelectric Point (pI)

26.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04001
malus_domestica	MD12G1233400.v1.1
prunus_persica	Prupe.6G336600_v2.0.a1 Prupe.6G336700_v2.0.a1
pyrus_communis	pycom04g19290 pycom12g21590
rosa_chinensis	RchiOBHm_Chr3g0452591
rosa_laevigata	RLG00000025581
rosa_multiflora	Rmu_sc0000608.1_g000023 Rmu_sc0028732.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429630
rosa_rugosa	Rorug02G0641500 Rorug02G0641500
rosa_samantha	Rh3AG044100 Rh3BG046200 Rh3CG044900 Rh3DG045200
rosa_wichuraiana	Rw3G003420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	62
AciI	CCGC	1 cut(s)	394
AclWI	GGATC	2 cut(s)	64, 218
AcoI	YGGCCR	3 cut(s)	3, 7, 578
AcuI	CTGAAG	1 cut(s)	555
AdeI	CACNNNGTG	1 cut(s)	440
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	4 cut(s)	48, 233, 245, 494
AgsI	TTSAA	3 cut(s)	244, 468, 553
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	1 cut(s)	21
AluI	AGCT	1 cut(s)	21
AlwI	GGATC	2 cut(s)	64, 218
AoxI	GGCC	8 cut(s)	3, 7, 76, 155, 259, 416, 537, 578
ApaI	GGGCCC	1 cut(s)	541
ApeKI	GCWGC	1 cut(s)	134
AspA2I	CCTAGG	1 cut(s)	227
AspS9I	GGNCC	6 cut(s)	76, 236, 259, 416, 537, 538
AsuHPI	GGTGA	1 cut(s)	509
AsuNHI	GCTAGC	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	236
AvrII	CCTAGG	1 cut(s)	227
BaeGI	GKGCMC	1 cut(s)	541
BalI	TGGCCA	1 cut(s)	580
BanII	GRGCYC	1 cut(s)	541
BbsI	GAAGAC	2 cut(s)	511, 561
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	2 cut(s)	179, 494
BceAI	ACGGC	2 cut(s)	142, 204
BciT130I	CCWGG	1 cut(s)	256
BciVI	GTATCC	1 cut(s)	275
BfaI	CTAG	2 cut(s)	216, 228
BfmI	CTRYAG	3 cut(s)	22, 310, 319
BfuI	GTATCC	1 cut(s)	275
BisI	GCNGC	1 cut(s)	135
BlnI	CCTAGG	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	256
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	6 cut(s)	76, 236, 259, 416, 537, 538
BmiI	GGNNCC	5 cut(s)	77, 238, 260, 417, 539
BmrFI	CCNGG	1 cut(s)	256
BmsI	GCATC	1 cut(s)	202
BmtI	GCTAGC	1 cut(s)	219
BpiI	GAAGAC	2 cut(s)	511, 561
BsaJI	CCNNGG	3 cut(s)	227, 255, 448
BsaWI	WCCGGW	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 233, 245, 494
Bse118I	RCCGGY	2 cut(s)	5, 41
Bse1I	ACTGG	1 cut(s)	113
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	3 cut(s)	227, 255, 448
BseLI	CCNNNNNNNGG	4 cut(s)	48, 233, 245, 494
BseMII	CTCAG	1 cut(s)	523
BseNI	ACTGG	1 cut(s)	113
BseRI	GAGGAG	1 cut(s)	87
BseSI	GKGCMC	1 cut(s)	541
BseXI	GCAGC	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	527
BshFI	GGCC	8 cut(s)	5, 9, 78, 157, 261, 418, 539, 580
BsiSI	CCGG	3 cut(s)	6, 42, 488
BslI	CCNNNNNNNGG	4 cut(s)	48, 233, 245, 494
BsmI	GAATGC	1 cut(s)	513
BsnI	GGCC	8 cut(s)	5, 9, 78, 157, 261, 418, 539, 580
Bsp120I	GGGCCC	1 cut(s)	537
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp1407I	TGTACA	1 cut(s)	336
Bsp143I	GATC	3 cut(s)	26, 56, 223
BspACI	CCGC	1 cut(s)	394
BspANI	GGCC	8 cut(s)	5, 9, 78, 157, 261, 418, 539, 580
BspCNI	CTCAG	1 cut(s)	522
BspLI	GGNNCC	5 cut(s)	77, 238, 260, 417, 539
BspOI	GCTAGC	1 cut(s)	219
BspPI	GGATC	2 cut(s)	64, 218
BsrFI	RCCGGY	2 cut(s)	5, 41
BsrGI	TGTACA	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	113
BssAI	RCCGGY	2 cut(s)	5, 41
BssECI	CCNNGG	3 cut(s)	227, 255, 448
BssMI	GATC	3 cut(s)	26, 56, 223
BssNAI	GTATAC	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	227
Bst1107I	GTATAC	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	2 cut(s)	440, 452
BstAUI	TGTACA	1 cut(s)	336
BstC8I	GCNNGC	2 cut(s)	7, 217
BstDEI	CTNAG	1 cut(s)	509
BstDSI	CCRYGG	1 cut(s)	448
BstKTI	GATC	3 cut(s)	29, 59, 226
BstMBI	GATC	3 cut(s)	26, 56, 223
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstNI	CCWGG	1 cut(s)	256
BstSCI	CCNGG	1 cut(s)	254
BstSFI	CTRYAG	3 cut(s)	22, 310, 319
BstSLI	GKGCMC	1 cut(s)	541
BstV1I	GCAGC	1 cut(s)	121
BstV2I	GAAGAC	2 cut(s)	511, 561
BstZ17I	GTATAC	1 cut(s)	63
BsuI	GTATCC	1 cut(s)	275
BsuRI	GGCC	8 cut(s)	5, 9, 78, 157, 261, 418, 539, 580
BtgI	CCRYGG	1 cut(s)	448
BtsIMutI	CAGTG	2 cut(s)	120, 207
Cac8I	GCNNGC	2 cut(s)	7, 217
Cfr10I	RCCGGY	2 cut(s)	5, 41
Cfr13I	GGNCC	6 cut(s)	76, 236, 259, 416, 537, 538
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	8 cut(s)	11, 89, 401, 412, 471, 529, 576, 591
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	1 cut(s)	509
DpnI	GATC	3 cut(s)	28, 58, 225
DpnII	GATC	3 cut(s)	26, 56, 223
DraIII	CACNNNGTG	1 cut(s)	440
EaeI	YGGCCR	3 cut(s)	3, 7, 578
Eco130I	CCWWGG	1 cut(s)	227
Eco147I	AGGCCT	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	541
Eco47I	GGWCC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	555
EcoO109I	RGGNCCY	2 cut(s)	537, 538
EcoRII	CCWGG	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	227
EcoT38I	GRGCYC	1 cut(s)	541
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	8 cut(s)	14, 92, 404, 415, 474, 532, 579, 594
FatI	CATG	8 cut(s)	10, 88, 400, 411, 470, 528, 575, 590
FblI	GTMKAC	1 cut(s)	62
Fnu4HI	GCNGC	1 cut(s)	135
FriOI	GRGCYC	1 cut(s)	541
FseI	GGCCGGCC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	2 cut(s)	216, 228
GluI	GCNGC	1 cut(s)	135
HaeIII	GGCC	8 cut(s)	5, 9, 78, 157, 261, 418, 539, 580
HapII	CCGG	3 cut(s)	6, 42, 488
Hin1II	CATG	8 cut(s)	14, 92, 404, 415, 474, 532, 579, 594
HinfI	GANTC	2 cut(s)	201, 507
HpaII	CCGG	3 cut(s)	6, 42, 488
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	2 cut(s)	363, 429
Hpy8I	GTNNAC	1 cut(s)	63
HpyAV	CCTTC	2 cut(s)	250, 547
HpyCH4III	ACNGT	2 cut(s)	440, 452
HpyCH4V	TGCA	2 cut(s)	544, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
HpyF3I	CTNAG	1 cut(s)	509
Hsp92II	CATG	8 cut(s)	14, 92, 404, 415, 474, 532, 579, 594
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	26, 56, 223
LpnPI	CCDG	9 cut(s)	15, 19, 55, 126, 211, 241, 268, 501, 554
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	2 cut(s)	216, 228
MaeIII	GTNAC	2 cut(s)	32, 314
MalI	GATC	3 cut(s)	28, 58, 225
MboI	GATC	3 cut(s)	26, 56, 223
MboII	GAAGA	2 cut(s)	516, 561
MfeI	CAATTG	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	541
MlsI	TGGCCA	1 cut(s)	580
MluCI	AATT	3 cut(s)	121, 145, 276
MluNI	TGGCCA	1 cut(s)	580
MlyI	GAGTC	1 cut(s)	501
MmeI	TCCRAC	2 cut(s)	214, 542
MnlI	CCTC	3 cut(s)	108, 168, 528
Mox20I	TGGCCA	1 cut(s)	580
MroNI	GCCGGC	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	580
MslI	CAYNNNNRTG	2 cut(s)	210, 405
Msp20I	TGGCCA	1 cut(s)	580
MspI	CCGG	3 cut(s)	6, 42, 488
MspR9I	CCNGG	1 cut(s)	256
MunI	CAATTG	1 cut(s)	145
Mva1269I	GAATGC	1 cut(s)	513
MvaI	CCWGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	1 cut(s)	306
NaeI	GCCGGC	1 cut(s)	7
NdeII	GATC	3 cut(s)	26, 56, 223
NgoMIV	GCCGGC	1 cut(s)	5
NheI	GCTAGC	1 cut(s)	215
NlaIII	CATG	8 cut(s)	14, 92, 404, 415, 474, 532, 579, 594
NlaIV	GGNNCC	5 cut(s)	77, 238, 260, 417, 539
NmuCI	GTSAC	1 cut(s)	314
PceI	AGGCCT	1 cut(s)	157
PctI	GAATGC	1 cut(s)	513
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	1 cut(s)	201
PkrI	GCNGC	1 cut(s)	136
PleI	GAGTC	1 cut(s)	501
PpsI	GAGTC	1 cut(s)	501
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	5 cut(s)	77, 238, 260, 417, 539
PspOMI	GGGCCC	1 cut(s)	537
PspPI	GGNCC	6 cut(s)	76, 236, 259, 416, 537, 538
RigI	GGCCGGCC	1 cut(s)	9
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
RseI	CAYNNNNRTG	2 cut(s)	210, 405
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	3 cut(s)	26, 56, 223
Sau96I	GGNCC	6 cut(s)	76, 236, 259, 416, 537, 538
SchI	GAGTC	1 cut(s)	501
ScrFI	CCNGG	1 cut(s)	256
SduI	GDGCHC	1 cut(s)	541
SetI	ASST	3 cut(s)	23, 34, 257
SfaNI	GCATC	1 cut(s)	202
SfcI	CTRYAG	3 cut(s)	22, 310, 319
SinI	GGWCC	1 cut(s)	236
SmiMI	CAYNNNNRTG	2 cut(s)	210, 405
Sse9I	AATT	3 cut(s)	121, 145, 276
SseBI	AGGCCT	1 cut(s)	157
SsiI	CCGC	1 cut(s)	394
SspMI	CTAG	2 cut(s)	216, 228
StuI	AGGCCT	1 cut(s)	157
StyD4I	CCNGG	1 cut(s)	254
StyI	CCWWGG	1 cut(s)	227
TaaI	ACNGT	2 cut(s)	440, 452
TasI	AATT	3 cut(s)	121, 145, 276
TatI	WGTACW	1 cut(s)	336
TfiI	GAWTC	1 cut(s)	201
TscAI	CASTG	2 cut(s)	120, 214
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	1 cut(s)	134
Tsp45I	GTSAC	1 cut(s)	314
TspRI	CASTG	2 cut(s)	120, 214
VpaK11BI	GGWCC	1 cut(s)	236
XcmI	CCANNNNNNNNNTGG	1 cut(s)	86
XmaJI	CCTAGG	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	62
XspI	CTAG	2 cut(s)	216, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.