Rmu_sc0000608.1_g000023

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000608.1
OG0013691
Physical Location & Seq
Forward (+)
111415 .. 112725
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000608.1_g000023.1.cds

Sequence Viewer

Length: 1146 bp
atggcttacaatgactacggcaattacagaccaggttactccaccggtggggttggagcttacaccgaccaatggggaaatccaaggcaaagttctcacccaggtgttgttgagccagttagaggctacggctatgctactgatgactcatggcagcgcaggtcttcgagccccgtcagaggtggttatggttatgctgaccaaccctccaggattgcaccatccaatggtgtgaattggcgccaacagccccatcaaaccggacactacagtggcacttcagcaggctataatgactataatgactacagcaacaagccaagttacaagcatagtggaaagactgaccactatgatgaccactacagcaacaagccaagttacaagcatagtggaaagactgaccactatgatgaccactacagcaacaagccaagttacaagcatagtggaaagactgaccactatgatgaccactacagcaacaagccaagttacaagcatagtggaaagactgaccactatgatgaccactacagcaacaagccaagttacaagcatagtggaaagactgaccactatgatgaccactacagcaacaagccaagttacaagcatagtggaaagactgaccactatgatgaccactacagcaacaagccaagttacaagcatagtggaaagactgaccactatgatgaccactacagcaacaagccaagttacaagcatagtggaaagactgaccactatgatgaccactacagcaacaagccaagttacaagcatagtggaaagactgaccactatgatgaccactacagcaacaagccaagttacaagcatagtggaaagactgaccactatgatgaccactacagcaacaagccaagttacaagcatagtggaaagagtgacaactatgatgatcactaccgcaaaaatgatagtagcagctatggaccagctgtcaacatgatatcaaacatggtatcaagccggcctaagccaagccgtactgtatattctactggtgcactccccgttcgcggtgatggcaggctcactgttccaacagatgacatggagagagccttgcactacttgaaggaaagtgcaaagtcttcaccatggccacgaacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

381

Amino Acids

43.84

Weight (kDa)

8.7

Isoelectric Point (pI)

66.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 150
AccB1I GGYRCC 1 cut(s) 240
AccB7I CCANNNNNTGG 1 cut(s) 227
AccII CGCG 1 cut(s) 1050
AciI CCGC 2 cut(s) 937, 1050
AcoI YGGCCR 1 cut(s) 1133
AcuI CTGAAG 1 cut(s) 264
AcyI GRCGYC 1 cut(s) 241
AfaI GTAC 1 cut(s) 1018
AfiI CCNNNNNNNGG 6 cut(s) 48, 72, 122, 179, 227, 1049
AgeI ACCGGT 1 cut(s) 44
AgsI TTSAA 1 cut(s) 1108
AhdI GACNNNNNGTC 1 cut(s) 968
AjnI CCWGG 3 cut(s) 31, 100, 209
AjuI GAANNNNNNNTTGG 2 cut(s) 76, 108
AleI CACNNNNGTG 2 cut(s) 102, 270
AluBI AGCT 3 cut(s) 59, 957, 968
AluI AGCT 3 cut(s) 59, 957, 968
Alw21I GWGCWC 1 cut(s) 1039
Alw44I GTGCAC 1 cut(s) 1035
AoxI GGCC 2 cut(s) 1001, 1133
ApaLI GTGCAC 1 cut(s) 1035
ApeKI GCWGC 2 cut(s) 154, 954
AsiGI ACCGGT 1 cut(s) 44
AspLEI GCGC 2 cut(s) 159, 243
AspS9I GGNCC 1 cut(s) 962
AsuHPI GGTGA 3 cut(s) 89, 1064, 1119
AvaII GGWCC 1 cut(s) 962
BaeGI GKGCMC 1 cut(s) 1039
BalI TGGCCA 1 cut(s) 1135
BanI GGYRCC 1 cut(s) 240
BanII GRGCYC 1 cut(s) 173
BbsI GAAGAC 2 cut(s) 156, 1116
Bbv12I GWGCWC 1 cut(s) 1039
BbvI GCAGC 2 cut(s) 166, 966
BccI CCATC 3 cut(s) 229, 261, 1049
BceAI ACGGC 3 cut(s) 34, 145, 999
BciT130I CCWGG 3 cut(s) 33, 102, 211
BclI TGATCA 1 cut(s) 928
BfoI RGCGCY 1 cut(s) 244
BfuAI ACCTGC 1 cut(s) 150
BisI GCNGC 2 cut(s) 155, 955
BlsI GCNGC 2 cut(s) 156, 956
Bme1390I CCNGG 3 cut(s) 33, 102, 211
Bme18I GGWCC 1 cut(s) 962
BmeRI GACNNNNNGTC 1 cut(s) 968
BmgT120I GGNCC 1 cut(s) 962
BmiI GGNNCC 1 cut(s) 242
BmrFI CCNGG 3 cut(s) 33, 102, 211
BpiI GAAGAC 2 cut(s) 156, 1116
BpmI CTGGAG 1 cut(s) 193
Bpu10I CCTNAGC 1 cut(s) 1005
BsaHI GRCGYC 1 cut(s) 241
BsaJI CCNNGG 3 cut(s) 83, 100, 1130
BsaWI WCCGGW 2 cut(s) 44, 260
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 6 cut(s) 48, 72, 122, 179, 227, 1049
Bse118I RCCGGY 2 cut(s) 44, 999
Bse1I ACTGG 2 cut(s) 116, 1036
BseBI CCWGG 3 cut(s) 33, 102, 211
BseDI CCNNGG 3 cut(s) 83, 100, 1130
BseGI GGATG 1 cut(s) 221
BseLI CCNNNNNNNGG 6 cut(s) 48, 72, 122, 179, 227, 1049
BseNI ACTGG 2 cut(s) 116, 1036
BseSI GKGCMC 1 cut(s) 1039
BseXI GCAGC 2 cut(s) 166, 966
Bsh1236I CGCG 1 cut(s) 1050
BshFI GGCC 2 cut(s) 1003, 1135
BshNI GGYRCC 1 cut(s) 240
BshTI ACCGGT 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 1039
BsiSI CCGG 3 cut(s) 45, 261, 1000
BslI CCNNNNNNNGG 6 cut(s) 48, 72, 122, 179, 227, 1049
BsnI GGCC 2 cut(s) 1003, 1135
Bsp1286I GDGCHC 2 cut(s) 173, 1039
Bsp143I GATC 1 cut(s) 928
Bsp19I CCATGG 1 cut(s) 1130
BspACI CCGC 2 cut(s) 937, 1050
BspANI GGCC 2 cut(s) 1003, 1135
BspFNI CGCG 1 cut(s) 1050
BspLI GGNNCC 1 cut(s) 242
BspMI ACCTGC 1 cut(s) 150
BspT107I GGYRCC 1 cut(s) 240
BsrFI RCCGGY 2 cut(s) 44, 999
BsrI ACTGG 2 cut(s) 116, 1036
BssAI RCCGGY 2 cut(s) 44, 999
BssECI CCNNGG 3 cut(s) 83, 100, 1130
BssMI GATC 1 cut(s) 928
BssNI GRCGYC 1 cut(s) 241
BssT1I CCWWGG 2 cut(s) 83, 1130
Bst2UI CCWGG 3 cut(s) 33, 102, 211
Bst4CI ACNGT 3 cut(s) 272, 1021, 1069
BstACI GRCGYC 1 cut(s) 241
BstC8I GCNNGC 3 cut(s) 286, 1001, 1061
BstDEI CTNAG 1 cut(s) 1005
BstDSI CCRYGG 1 cut(s) 1130
BstF5I GGATG 1 cut(s) 221
BstFNI CGCG 1 cut(s) 1050
BstH2I RGCGCY 1 cut(s) 244
BstHHI GCGC 2 cut(s) 159, 243
BstKTI GATC 1 cut(s) 931
BstMBI GATC 1 cut(s) 928
BstMWI GCNNNNNNNGC 2 cut(s) 247, 1056
BstNI CCWGG 3 cut(s) 33, 102, 211
BstSCI CCNGG 3 cut(s) 31, 100, 209
BstSLI GKGCMC 1 cut(s) 1039
BstUI CGCG 1 cut(s) 1050
BstV1I GCAGC 2 cut(s) 166, 966
BstV2I GAAGAC 2 cut(s) 156, 1116
BsuRI GGCC 2 cut(s) 1003, 1135
BtgI CCRYGG 1 cut(s) 1130
BtsCI GGATG 1 cut(s) 221
BtsIMutI CAGTG 2 cut(s) 277, 1065
BveI ACCTGC 1 cut(s) 150
Cac8I GCNNGC 3 cut(s) 286, 1001, 1061
CfoI GCGC 2 cut(s) 159, 243
Cfr10I RCCGGY 2 cut(s) 44, 999
Cfr13I GGNCC 1 cut(s) 962
CsiI ACCWGGT 1 cut(s) 31
Csp6I GTAC 1 cut(s) 1017
CspAI ACCGGT 1 cut(s) 44
CviAII CATG 5 cut(s) 150, 976, 988, 1084, 1131
CviQI GTAC 1 cut(s) 1017
DdeI CTNAG 1 cut(s) 1005
DinI GGCGCC 1 cut(s) 242
DpnI GATC 1 cut(s) 930
DpnII GATC 1 cut(s) 928
DriI GACNNNNNGTC 1 cut(s) 968
EaeI YGGCCR 1 cut(s) 1133
Eam1105I GACNNNNNGTC 1 cut(s) 968
Eco130I CCWWGG 2 cut(s) 83, 1130
Eco24I GRGCYC 1 cut(s) 173
Eco32I GATATC 1 cut(s) 981
Eco47I GGWCC 1 cut(s) 962
Eco57I CTGAAG 1 cut(s) 264
EcoRII CCWGG 3 cut(s) 31, 100, 209
EcoRV GATATC 1 cut(s) 981
EcoT14I CCWWGG 2 cut(s) 83, 1130
EcoT38I GRGCYC 1 cut(s) 173
EgeI GGCGCC 1 cut(s) 242
EheI GGCGCC 1 cut(s) 242
ErhI CCWWGG 2 cut(s) 83, 1130
FaeI CATG 5 cut(s) 153, 979, 991, 1087, 1134
FatI CATG 5 cut(s) 149, 975, 987, 1083, 1130
FbaI TGATCA 1 cut(s) 928
Fnu4HI GCNGC 2 cut(s) 155, 955
FokI GGATG 1 cut(s) 208
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 2 cut(s) 155, 955
GlaI GCGC 2 cut(s) 158, 242
GluI GCNGC 2 cut(s) 155, 955
GsuI CTGGAG 1 cut(s) 193
HaeII RGCGCY 1 cut(s) 244
HaeIII GGCC 2 cut(s) 1003, 1135
HapII CCGG 3 cut(s) 45, 261, 1000
HhaI GCGC 2 cut(s) 159, 243
Hin1I GRCGYC 1 cut(s) 241
Hin1II CATG 5 cut(s) 153, 979, 991, 1087, 1134
Hin6I GCGC 2 cut(s) 157, 241
HinP1I GCGC 2 cut(s) 157, 241
HincII GTYRAC 1 cut(s) 973
HindII GTYRAC 1 cut(s) 973
HinfI GANTC 1 cut(s) 146
HpaII CCGG 3 cut(s) 45, 261, 1000
HphI GGTGA 3 cut(s) 89, 1064, 1119
Hpy166II GTNNAC 2 cut(s) 973, 1037
Hpy188I TCNGA 1 cut(s) 179
Hpy8I GTNNAC 2 cut(s) 973, 1037
HpyAV CCTTC 1 cut(s) 1102
HpyCH4III ACNGT 3 cut(s) 272, 1021, 1069
HpyCH4V TGCA 4 cut(s) 218, 1037, 1099, 1118
HpyF10VI GCNNNNNNNGC 2 cut(s) 247, 1056
HpyF3I CTNAG 1 cut(s) 1005
Hsp92I GRCGYC 1 cut(s) 241
Hsp92II CATG 5 cut(s) 153, 979, 991, 1087, 1134
HspAI GCGC 2 cut(s) 157, 241
KasI GGCGCC 1 cut(s) 240
KroI GCCGGC 1 cut(s) 999
KroNI GCCGGC 1 cut(s) 1001
Ksp22I TGATCA 1 cut(s) 928
Kzo9I GATC 1 cut(s) 928
LmnI GCTCC 1 cut(s) 56
Lsp1109I GCAGC 2 cut(s) 166, 966
MabI ACCWGGT 1 cut(s) 31
MalI GATC 1 cut(s) 930
MboI GATC 1 cut(s) 928
MboII GAAGA 2 cut(s) 156, 1116
MhlI GDGCHC 2 cut(s) 173, 1039
MlsI TGGCCA 1 cut(s) 1135
MluCI AATT 2 cut(s) 22, 235
MluNI TGGCCA 1 cut(s) 1135
Mly113I GGCGCC 1 cut(s) 241
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 2 cut(s) 34, 1097
MnlI CCTC 3 cut(s) 116, 173, 217
Mox20I TGGCCA 1 cut(s) 1135
MroNI GCCGGC 1 cut(s) 999
MscI TGGCCA 1 cut(s) 1135
Msp20I TGGCCA 1 cut(s) 1135
MspA1I CMGCKG 1 cut(s) 968
MspI CCGG 3 cut(s) 45, 261, 1000
MspR9I CCNGG 3 cut(s) 33, 102, 211
MvaI CCWGG 3 cut(s) 33, 102, 211
MvnI CGCG 1 cut(s) 1050
MwoI GCNNNNNNNGC 2 cut(s) 247, 1056
NaeI GCCGGC 1 cut(s) 1001
NarI GGCGCC 1 cut(s) 241
NcoI CCATGG 1 cut(s) 1130
NdeII GATC 1 cut(s) 928
NgoMIV GCCGGC 1 cut(s) 999
NlaIII CATG 5 cut(s) 153, 979, 991, 1087, 1134
NlaIV GGNNCC 1 cut(s) 242
NmuCI GTSAC 1 cut(s) 914
OliI CACNNNNGTG 2 cut(s) 102, 270
PdiI GCCGGC 1 cut(s) 1001
PflMI CCANNNNNTGG 1 cut(s) 227
PfoI TCCNGGA 1 cut(s) 209
PinAI ACCGGT 1 cut(s) 44
PkrI GCNGC 2 cut(s) 156, 956
PleI GAGTC 1 cut(s) 140
PluTI GGCGCC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 140
Psp6I CCWGG 3 cut(s) 31, 100, 209
PspGI CCWGG 3 cut(s) 31, 100, 209
PspN4I GGNNCC 1 cut(s) 242
PspPI GGNCC 1 cut(s) 962
PvuII CAGCTG 1 cut(s) 968
RsaI GTAC 1 cut(s) 1018
RsaNI GTAC 1 cut(s) 1017
SatI GCNGC 2 cut(s) 155, 955
Sau3AI GATC 1 cut(s) 928
Sau96I GGNCC 1 cut(s) 962
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 3 cut(s) 33, 102, 211
SduI GDGCHC 2 cut(s) 173, 1039
SetI ASST 7 cut(s) 37, 61, 106, 164, 184, 959, 970
SexAI ACCWGGT 1 cut(s) 31
SfoI GGCGCC 1 cut(s) 242
SgrAI CRCCGGYG 1 cut(s) 44
SinI GGWCC 1 cut(s) 962
Sse9I AATT 2 cut(s) 22, 235
SsiI CCGC 2 cut(s) 937, 1050
SspDI GGCGCC 1 cut(s) 240
StyD4I CCNGG 3 cut(s) 31, 100, 209
StyI CCWWGG 2 cut(s) 83, 1130
TaaI ACNGT 3 cut(s) 272, 1021, 1069
TaqI TCGA 1 cut(s) 167
TasI AATT 2 cut(s) 22, 235
TscAI CASTG 2 cut(s) 277, 1072
TseFI GTSAC 1 cut(s) 914
TseI GCWGC 2 cut(s) 154, 954
Tsp45I GTSAC 1 cut(s) 914
TspRI CASTG 2 cut(s) 277, 1072
Van91I CCANNNNNTGG 1 cut(s) 227
VneI GTGCAC 1 cut(s) 1035
VpaK11BI GGWCC 1 cut(s) 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.