Rroxscaffold_6G00429630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0013691
Physical Location & Seq
Forward (+)
49856867 .. 49857664
798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00429630.1

Sequence Viewer

Length: 798 bp
ATGGCTTACAATGACTACGGCAATTACAGACCAGGTTACTCCACCGGTGGGGTTGGAGCTTACACCGACCAATGGGGAAATCCAAGGTATGCTTCTGATGACGAGGAGTGCCGTACAGTCATTGTTGATGCTGACGGTACTCGAAGAACAATAATTGGTTGTGTCCCCATCCGTAAACCAGAAACTTATATTACCACAACCGAGACTATCATTGAAGAACGTGTTCACTCACCTTTATTACCTTCATACAGGCAAGGTTCTCACCCAGGTGTTGTTGAGCCAGTTAGAGGCTATGGCTATGCTGCTGATGACTCATGGCAGCGCAGGTCTTCGAGCCCCGTCAGAGGTGGTTATGGTTATGCTGACCAACCCTCCAGGATTGCACCATCCAATGGTGTGAATTGGCGCCAACAGCCCCATCAAACCGGACACTACAGTGGCACTTCAGCAGGCTATAATGACTATAATGACTACAGCAACAAGCCAAGTTACAAGCATAGTGGAAAGACTGACAACTATGATGACCACTACAGCAACAAGCCAAGTTACAAGCATAGTGGAAGGAGTGACAACTATGATGATCACTACCGCAAAAATGATAGTAGCAGCTATGGACCAGCTGTCAACATGATATCAAACCTGGTATCAAGCCGGCCTAAGCCAAGCCGTACTGTATATTCTACTGGTGCACTCCCCGTTCGCGGTGATGGCAGGCTCACTGTTCCAACAGATGACATGGAGAAGGCCTTGCACTACTTGAAGGAAAGTGCAAAGCCTTCACCATGGCCACGAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

29.66

Weight (kDa)

8.32

Isoelectric Point (pI)

52.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 315
AccB1I GGYRCC 1 cut(s) 405
AccB7I CCANNNNNTGG 1 cut(s) 392
AccII CGCG 1 cut(s) 702
AciI CCGC 2 cut(s) 589, 702
AcoI YGGCCR 1 cut(s) 785
AcuI CTGAAG 1 cut(s) 429
AcyI GRCGYC 1 cut(s) 406
AfaI GTAC 3 cut(s) 115, 139, 670
AfiI CCNNNNNNNGG 6 cut(s) 48, 72, 287, 344, 392, 701
AflIII ACRYGT 1 cut(s) 220
AgeI ACCGGT 1 cut(s) 44
AgsI TTSAA 2 cut(s) 215, 760
AhdI GACNNNNNGTC 1 cut(s) 620
AjnI CCWGG 4 cut(s) 31, 265, 374, 639
AjuI GAANNNNNNNTTGG 2 cut(s) 76, 108
AleI CACNNNNGTG 2 cut(s) 267, 435
AluBI AGCT 3 cut(s) 59, 609, 620
AluI AGCT 3 cut(s) 59, 609, 620
Alw21I GWGCWC 1 cut(s) 691
Alw26I GTCTC 1 cut(s) 197
Alw44I GTGCAC 1 cut(s) 687
AoxI GGCC 3 cut(s) 653, 744, 785
ApaLI GTGCAC 1 cut(s) 687
ApeKI GCWGC 3 cut(s) 302, 319, 606
AsiGI ACCGGT 1 cut(s) 44
Asp700I GAANNNNTTC 1 cut(s) 222
AspLEI GCGC 2 cut(s) 324, 408
AspS9I GGNCC 1 cut(s) 614
AsuHPI GGTGA 4 cut(s) 222, 254, 716, 771
AvaII GGWCC 1 cut(s) 614
BaeGI GKGCMC 1 cut(s) 691
BalI TGGCCA 1 cut(s) 787
BanI GGYRCC 1 cut(s) 405
BanII GRGCYC 1 cut(s) 338
BbsI GAAGAC 1 cut(s) 321
Bbv12I GWGCWC 1 cut(s) 691
BbvI GCAGC 3 cut(s) 289, 331, 618
BccI CCATC 4 cut(s) 176, 394, 426, 701
BceAI ACGGC 3 cut(s) 34, 96, 651
BciT130I CCWGG 4 cut(s) 33, 267, 376, 641
BclI TGATCA 1 cut(s) 580
BcoDI GTCTC 1 cut(s) 197
BfmI CTRYAG 3 cut(s) 433, 472, 529
BfoI RGCGCY 1 cut(s) 409
BfuAI ACCTGC 1 cut(s) 315
BisI GCNGC 3 cut(s) 303, 320, 607
BlsI GCNGC 3 cut(s) 304, 321, 608
Bme1390I CCNGG 4 cut(s) 33, 267, 376, 641
Bme18I GGWCC 1 cut(s) 614
BmeRI GACNNNNNGTC 1 cut(s) 620
BmgT120I GGNCC 1 cut(s) 614
BmiI GGNNCC 1 cut(s) 407
BmrFI CCNGG 4 cut(s) 33, 267, 376, 641
BmsI GCATC 1 cut(s) 118
BpiI GAAGAC 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 358
Bpu10I CCTNAGC 1 cut(s) 657
BsaHI GRCGYC 1 cut(s) 406
BsaJI CCNNGG 3 cut(s) 83, 265, 782
BsaWI WCCGGW 2 cut(s) 44, 425
BsaXI ACNNNNNCTCC 2 cut(s) 356, 386
Bsc4I CCNNNNNNNGG 6 cut(s) 48, 72, 287, 344, 392, 701
Bse118I RCCGGY 2 cut(s) 44, 651
Bse1I ACTGG 2 cut(s) 281, 688
BseBI CCWGG 4 cut(s) 33, 267, 376, 641
BseDI CCNNGG 3 cut(s) 83, 265, 782
BseGI GGATG 2 cut(s) 168, 386
BseLI CCNNNNNNNGG 6 cut(s) 48, 72, 287, 344, 392, 701
BseNI ACTGG 2 cut(s) 281, 688
BseRI GAGGAG 1 cut(s) 119
BseSI GKGCMC 1 cut(s) 691
BseXI GCAGC 3 cut(s) 289, 331, 618
Bsh1236I CGCG 1 cut(s) 702
BshFI GGCC 3 cut(s) 655, 746, 787
BshNI GGYRCC 1 cut(s) 405
BshTI ACCGGT 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 691
BsiSI CCGG 3 cut(s) 45, 426, 652
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 6 cut(s) 48, 72, 287, 344, 392, 701
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 149
BsnI GGCC 3 cut(s) 655, 746, 787
Bsp1286I GDGCHC 2 cut(s) 338, 691
Bsp143I GATC 1 cut(s) 580
Bsp19I CCATGG 1 cut(s) 782
BspACI CCGC 2 cut(s) 589, 702
BspANI GGCC 3 cut(s) 655, 746, 787
BspFNI CGCG 1 cut(s) 702
BspLI GGNNCC 1 cut(s) 407
BspMI ACCTGC 1 cut(s) 315
BspT107I GGYRCC 1 cut(s) 405
BsrFI RCCGGY 2 cut(s) 44, 651
BsrI ACTGG 2 cut(s) 281, 688
BssAI RCCGGY 2 cut(s) 44, 651
BssECI CCNNGG 3 cut(s) 83, 265, 782
BssMI GATC 1 cut(s) 580
BssNI GRCGYC 1 cut(s) 406
BssT1I CCWWGG 2 cut(s) 83, 782
Bst2UI CCWGG 4 cut(s) 33, 267, 376, 641
Bst4CI ACNGT 5 cut(s) 118, 137, 437, 673, 721
BstACI GRCGYC 1 cut(s) 406
BstC8I GCNNGC 3 cut(s) 451, 653, 713
BstDEI CTNAG 1 cut(s) 657
BstDSI CCRYGG 1 cut(s) 782
BstF5I GGATG 2 cut(s) 168, 386
BstFNI CGCG 1 cut(s) 702
BstH2I RGCGCY 1 cut(s) 409
BstHHI GCGC 2 cut(s) 324, 408
BstKTI GATC 1 cut(s) 583
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 1 cut(s) 580
BstMWI GCNNNNNNNGC 2 cut(s) 412, 708
BstNI CCWGG 4 cut(s) 33, 267, 376, 641
BstSCI CCNGG 4 cut(s) 31, 265, 374, 639
BstSFI CTRYAG 3 cut(s) 433, 472, 529
BstSLI GKGCMC 1 cut(s) 691
BstUI CGCG 1 cut(s) 702
BstV1I GCAGC 3 cut(s) 289, 331, 618
BstV2I GAAGAC 1 cut(s) 321
BsuRI GGCC 3 cut(s) 655, 746, 787
BtgI CCRYGG 1 cut(s) 782
BtsCI GGATG 2 cut(s) 168, 386
BtsIMutI CAGTG 2 cut(s) 442, 717
BveI ACCTGC 1 cut(s) 315
Cac8I GCNNGC 3 cut(s) 451, 653, 713
CfoI GCGC 2 cut(s) 324, 408
Cfr10I RCCGGY 2 cut(s) 44, 651
Cfr13I GGNCC 1 cut(s) 614
CsiI ACCWGGT 2 cut(s) 31, 639
Csp6I GTAC 3 cut(s) 114, 138, 669
CspAI ACCGGT 1 cut(s) 44
CspCI CAANNNNNGTGG 4 cut(s) 481, 516, 538, 573
CviAII CATG 4 cut(s) 315, 628, 736, 783
CviQI GTAC 3 cut(s) 114, 138, 669
DdeI CTNAG 1 cut(s) 657
DinI GGCGCC 1 cut(s) 407
DpnI GATC 1 cut(s) 582
DpnII GATC 1 cut(s) 580
DriI GACNNNNNGTC 1 cut(s) 620
EaeI YGGCCR 1 cut(s) 785
Eam1105I GACNNNNNGTC 1 cut(s) 620
Eco130I CCWWGG 2 cut(s) 83, 782
Eco147I AGGCCT 1 cut(s) 746
Eco24I GRGCYC 1 cut(s) 338
Eco32I GATATC 1 cut(s) 633
Eco47I GGWCC 1 cut(s) 614
Eco57I CTGAAG 1 cut(s) 429
EcoRII CCWGG 4 cut(s) 31, 265, 374, 639
EcoRV GATATC 1 cut(s) 633
EcoT14I CCWWGG 2 cut(s) 83, 782
EcoT38I GRGCYC 1 cut(s) 338
EgeI GGCGCC 1 cut(s) 407
EheI GGCGCC 1 cut(s) 407
ErhI CCWWGG 2 cut(s) 83, 782
FaeI CATG 4 cut(s) 318, 631, 739, 786
FalI AAGNNNNNCTT 2 cut(s) 76, 108
FaqI GGGAC 1 cut(s) 149
FatI CATG 4 cut(s) 314, 627, 735, 782
FbaI TGATCA 1 cut(s) 580
Fnu4HI GCNGC 3 cut(s) 303, 320, 607
FokI GGATG 2 cut(s) 155, 373
FriOI GRGCYC 1 cut(s) 338
Fsp4HI GCNGC 3 cut(s) 303, 320, 607
GlaI GCGC 2 cut(s) 323, 407
GluI GCNGC 3 cut(s) 303, 320, 607
GsuI CTGGAG 1 cut(s) 358
HaeII RGCGCY 1 cut(s) 409
HaeIII GGCC 3 cut(s) 655, 746, 787
HapII CCGG 3 cut(s) 45, 426, 652
HhaI GCGC 2 cut(s) 324, 408
Hin1I GRCGYC 1 cut(s) 406
Hin1II CATG 4 cut(s) 318, 631, 739, 786
Hin6I GCGC 2 cut(s) 322, 406
HinP1I GCGC 2 cut(s) 322, 406
HincII GTYRAC 1 cut(s) 625
HindII GTYRAC 1 cut(s) 625
HinfI GANTC 1 cut(s) 311
HpaII CCGG 3 cut(s) 45, 426, 652
HphI GGTGA 4 cut(s) 222, 254, 716, 771
Hpy166II GTNNAC 4 cut(s) 176, 226, 625, 689
Hpy188I TCNGA 2 cut(s) 97, 344
Hpy8I GTNNAC 4 cut(s) 176, 226, 625, 689
HpyAV CCTTC 5 cut(s) 252, 555, 736, 754, 786
HpyCH4III ACNGT 5 cut(s) 118, 137, 437, 673, 721
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 4 cut(s) 383, 689, 751, 770
HpyF10VI GCNNNNNNNGC 2 cut(s) 412, 708
HpyF3I CTNAG 1 cut(s) 657
HpySE526I ACGT 1 cut(s) 220
Hsp92I GRCGYC 1 cut(s) 406
Hsp92II CATG 4 cut(s) 318, 631, 739, 786
HspAI GCGC 2 cut(s) 322, 406
KasI GGCGCC 1 cut(s) 405
KroI GCCGGC 1 cut(s) 651
KroNI GCCGGC 1 cut(s) 653
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 1 cut(s) 580
LmnI GCTCC 1 cut(s) 56
Lsp1109I GCAGC 3 cut(s) 289, 331, 618
LweI GCATC 1 cut(s) 118
MabI ACCWGGT 2 cut(s) 31, 639
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 4 cut(s) 35, 488, 545, 566
MalI GATC 1 cut(s) 582
MboI GATC 1 cut(s) 580
MboII GAAGA 3 cut(s) 156, 227, 321
MhlI GDGCHC 2 cut(s) 338, 691
MlsI TGGCCA 1 cut(s) 787
MluCI AATT 3 cut(s) 22, 153, 400
MluNI TGGCCA 1 cut(s) 787
Mly113I GGCGCC 1 cut(s) 406
MlyI GAGTC 1 cut(s) 305
MmeI TCCRAC 2 cut(s) 34, 749
MnlI CCTC 4 cut(s) 97, 281, 338, 382
Mox20I TGGCCA 1 cut(s) 787
MroNI GCCGGC 1 cut(s) 651
MroXI GAANNNNTTC 1 cut(s) 222
MscI TGGCCA 1 cut(s) 787
MslI CAYNNNNRTG 2 cut(s) 267, 435
Msp20I TGGCCA 1 cut(s) 787
MspA1I CMGCKG 1 cut(s) 620
MspI CCGG 3 cut(s) 45, 426, 652
MspR9I CCNGG 4 cut(s) 33, 267, 376, 641
MvaI CCWGG 4 cut(s) 33, 267, 376, 641
MvnI CGCG 1 cut(s) 702
MwoI GCNNNNNNNGC 2 cut(s) 412, 708
NaeI GCCGGC 1 cut(s) 653
NarI GGCGCC 1 cut(s) 406
NcoI CCATGG 1 cut(s) 782
NdeII GATC 1 cut(s) 580
NgoMIV GCCGGC 1 cut(s) 651
NlaIII CATG 4 cut(s) 318, 631, 739, 786
NlaIV GGNNCC 1 cut(s) 407
NmuCI GTSAC 1 cut(s) 566
OliI CACNNNNGTG 2 cut(s) 267, 435
PceI AGGCCT 1 cut(s) 746
PdiI GCCGGC 1 cut(s) 653
PdmI GAANNNNTTC 1 cut(s) 222
PflMI CCANNNNNTGG 1 cut(s) 392
PfoI TCCNGGA 1 cut(s) 374
PinAI ACCGGT 1 cut(s) 44
PkrI GCNGC 3 cut(s) 304, 321, 608
PleI GAGTC 1 cut(s) 305
PluTI GGCGCC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 305
Psp6I CCWGG 4 cut(s) 31, 265, 374, 639
PspGI CCWGG 4 cut(s) 31, 265, 374, 639
PspN4I GGNNCC 1 cut(s) 407
PspPI GGNCC 1 cut(s) 614
PvuII CAGCTG 1 cut(s) 620
RsaI GTAC 3 cut(s) 115, 139, 670
RsaNI GTAC 3 cut(s) 114, 138, 669
RseI CAYNNNNRTG 2 cut(s) 267, 435
SatI GCNGC 3 cut(s) 303, 320, 607
Sau3AI GATC 1 cut(s) 580
Sau96I GGNCC 1 cut(s) 614
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 4 cut(s) 33, 267, 376, 641
SduI GDGCHC 2 cut(s) 338, 691
SexAI ACCWGGT 2 cut(s) 31, 639
SfaNI GCATC 1 cut(s) 118
SfcI CTRYAG 3 cut(s) 433, 472, 529
SfoI GGCGCC 1 cut(s) 407
SgrAI CRCCGGYG 1 cut(s) 44
SinI GGWCC 1 cut(s) 614
SmiMI CAYNNNNRTG 2 cut(s) 267, 435
Sse9I AATT 3 cut(s) 22, 153, 400
SseBI AGGCCT 1 cut(s) 746
SsiI CCGC 2 cut(s) 589, 702
SspDI GGCGCC 1 cut(s) 405
StuI AGGCCT 1 cut(s) 746
StyD4I CCNGG 4 cut(s) 31, 265, 374, 639
StyI CCWWGG 2 cut(s) 83, 782
TaaI ACNGT 5 cut(s) 118, 137, 437, 673, 721
TaiI ACGT 1 cut(s) 223
TaqI TCGA 2 cut(s) 142, 332
TasI AATT 3 cut(s) 22, 153, 400
TscAI CASTG 2 cut(s) 442, 724
TseFI GTSAC 1 cut(s) 566
TseI GCWGC 3 cut(s) 302, 319, 606
Tsp45I GTSAC 1 cut(s) 566
TspDTI ATGAA 1 cut(s) 234
TspGWI ACGGA 1 cut(s) 161
TspRI CASTG 2 cut(s) 442, 724
Van91I CCANNNNNTGG 1 cut(s) 392
VneI GTGCAC 1 cut(s) 687
VpaK11BI GGWCC 1 cut(s) 614
XmnI GAANNNNTTC 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.