Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0013691

Physical Location & Seq

Genomic Coordinates Forward (+)

2931961 .. 2932746

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G003420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCTTACAATGACTACGGCAATTACAGACCAGGTTACTCCACCGGCGGAGTAGGAGCTTACACCGACCAATGGGGAAATCCAAGGTCTTCGAGCCCTGTCAGAGGTGGTTATGTTTATGCTGATCAACCCTCCAGGATTGCACCATCCAATGGTGTGAATTGGCGCCCACAGCCCCAGCAAACCGGACACTATAGTGGCACTTCAGCAGGCTATAATGACTATAATGACTACAGCAACAAGCCAAGTTACAAGCATAGTGGAAAGACTGACAACTATGATGACCGCTACAGCAACAAGCCAAGTTACAAGCATAGTGGAAAGAGTGACAACTATGATGATCACTACCGCAAAAATGAAACTGGCAGCTATGGAACACCTGTCAACATGATATCAAACAGCCGGCCTAAGCCAAGCCGTACTGTATATTCTACTGCTGCACTCCCCGTTCGCGGTGATGGCAGGCTCACTATTCCAACAGATGACATGGAGAGAGCCTTGCACTACTTGAAGGAAAGTGCAAAGCCTTCACCATGGCCACGAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

20.4

Weight (kDa)

9.3

Isoelectric Point (pI)

41.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04001
malus_domestica	MD12G1233400.v1.1
prunus_persica	Prupe.6G336600_v2.0.a1 Prupe.6G336700_v2.0.a1
pyrus_communis	pycom04g19290 pycom12g21590
rosa_chinensis	RchiOBHm_Chr3g0452591
rosa_laevigata	RLG00000025581
rosa_multiflora	Rmu_sc0000608.1_g000023 Rmu_sc0028732.1_g000001
rosa_roxburghii	Rroxscaffold_6G00429630
rosa_rugosa	Rorug02G0641500 Rorug02G0641500
rosa_samantha	Rh3AG044100 Rh3BG046200 Rh3CG044900 Rh3DG045200
rosa_wichuraiana	Rw3G003420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	165
AccB7I	CCANNNNNTGG	1 cut(s)	152
AccII	CGCG	1 cut(s)	453
AciI	CCGC	4 cut(s)	48, 286, 349, 453
AcoI	YGGCCR	1 cut(s)	536
AcuI	CTGAAG	1 cut(s)	189
AcyI	GRCGYC	1 cut(s)	166
AfaI	GTAC	1 cut(s)	421
AfiI	CCNNNNNNNGG	4 cut(s)	72, 104, 152, 452
AgsI	TTSAA	1 cut(s)	511
AjnI	CCWGG	2 cut(s)	31, 134
AleI	CACNNNNGTG	1 cut(s)	195
AluBI	AGCT	2 cut(s)	59, 369
AluI	AGCT	2 cut(s)	59, 369
AoxI	GGCC	2 cut(s)	404, 536
ApeKI	GCWGC	2 cut(s)	366, 437
AspLEI	GCGC	1 cut(s)	168
AsuHPI	GGTGA	2 cut(s)	467, 522
BalI	TGGCCA	1 cut(s)	538
BanI	GGYRCC	1 cut(s)	165
BanII	GRGCYC	1 cut(s)	98
BbsI	GAAGAC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	378, 424
BccI	CCATC	2 cut(s)	154, 452
BceAI	ACGGC	2 cut(s)	34, 402
BciT130I	CCWGG	2 cut(s)	33, 136
BclI	TGATCA	2 cut(s)	124, 340
BfmI	CTRYAG	3 cut(s)	193, 232, 289
BfoI	RGCGCY	1 cut(s)	169
BisI	GCNGC	2 cut(s)	367, 438
BlsI	GCNGC	2 cut(s)	368, 439
Bme1390I	CCNGG	2 cut(s)	33, 136
BmiI	GGNNCC	1 cut(s)	167
BmrFI	CCNGG	2 cut(s)	33, 136
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	118
Bpu10I	CCTNAGC	1 cut(s)	408
BsaHI	GRCGYC	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	83, 533
BsaWI	WCCGGW	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	4 cut(s)	72, 104, 152, 452
Bse118I	RCCGGY	2 cut(s)	44, 402
Bse1I	ACTGG	1 cut(s)	367
BseBI	CCWGG	2 cut(s)	33, 136
BseDI	CCNNGG	2 cut(s)	83, 533
BseGI	GGATG	1 cut(s)	146
BseLI	CCNNNNNNNGG	4 cut(s)	72, 104, 152, 452
BseNI	ACTGG	1 cut(s)	367
BseXI	GCAGC	2 cut(s)	378, 424
BseYI	CCCAGC	1 cut(s)	177
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	1 cut(s)	453
BshFI	GGCC	2 cut(s)	406, 538
BshNI	GGYRCC	1 cut(s)	165
BsiSI	CCGG	3 cut(s)	45, 186, 403
BslI	CCNNNNNNNGG	4 cut(s)	72, 104, 152, 452
BsnI	GGCC	2 cut(s)	406, 538
Bsp1286I	GDGCHC	1 cut(s)	98
Bsp143I	GATC	2 cut(s)	124, 340
Bsp19I	CCATGG	1 cut(s)	533
BspACI	CCGC	4 cut(s)	48, 286, 349, 453
BspANI	GGCC	2 cut(s)	406, 538
BspFNI	CGCG	1 cut(s)	453
BspLI	GGNNCC	1 cut(s)	167
BspT107I	GGYRCC	1 cut(s)	165
BsrFI	RCCGGY	2 cut(s)	44, 402
BsrI	ACTGG	1 cut(s)	367
BssAI	RCCGGY	2 cut(s)	44, 402
BssECI	CCNNGG	2 cut(s)	83, 533
BssMI	GATC	2 cut(s)	124, 340
BssNI	GRCGYC	1 cut(s)	166
BssT1I	CCWWGG	2 cut(s)	83, 533
Bst2UI	CCWGG	2 cut(s)	33, 136
Bst4CI	ACNGT	1 cut(s)	424
BstACI	GRCGYC	1 cut(s)	166
BstC8I	GCNNGC	3 cut(s)	211, 404, 464
BstDEI	CTNAG	1 cut(s)	408
BstDSI	CCRYGG	1 cut(s)	533
BstENI	CCTNNNNNAGG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	146
BstFNI	CGCG	1 cut(s)	453
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	2 cut(s)	127, 343
BstMBI	GATC	2 cut(s)	124, 340
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 459
BstNI	CCWGG	2 cut(s)	33, 136
BstSCI	CCNGG	2 cut(s)	31, 134
BstSFI	CTRYAG	3 cut(s)	193, 232, 289
BstUI	CGCG	1 cut(s)	453
BstV1I	GCAGC	2 cut(s)	378, 424
BstV2I	GAAGAC	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	406, 538
BtgI	CCRYGG	1 cut(s)	533
BtsCI	GGATG	1 cut(s)	146
Cac8I	GCNNGC	3 cut(s)	211, 404, 464
CfoI	GCGC	1 cut(s)	168
Cfr10I	RCCGGY	2 cut(s)	44, 402
CsiI	ACCWGGT	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	420
CspCI	CAANNNNNGTGG	4 cut(s)	241, 276, 298, 333
CviAII	CATG	3 cut(s)	388, 487, 534
CviQI	GTAC	1 cut(s)	420
DdeI	CTNAG	1 cut(s)	408
DinI	GGCGCC	1 cut(s)	167
DpnI	GATC	2 cut(s)	126, 342
DpnII	GATC	2 cut(s)	124, 340
EaeI	YGGCCR	1 cut(s)	536
EciI	GGCGGA	1 cut(s)	63
Eco130I	CCWWGG	2 cut(s)	83, 533
Eco24I	GRGCYC	1 cut(s)	98
Eco32I	GATATC	1 cut(s)	393
Eco57I	CTGAAG	1 cut(s)	189
EcoNI	CCTNNNNNAGG	1 cut(s)	102
EcoRII	CCWGG	2 cut(s)	31, 134
EcoRV	GATATC	1 cut(s)	393
EcoT14I	CCWWGG	2 cut(s)	83, 533
EcoT38I	GRGCYC	1 cut(s)	98
EgeI	GGCGCC	1 cut(s)	167
EheI	GGCGCC	1 cut(s)	167
ErhI	CCWWGG	2 cut(s)	83, 533
FaeI	CATG	3 cut(s)	391, 490, 537
FatI	CATG	3 cut(s)	387, 486, 533
FbaI	TGATCA	2 cut(s)	124, 340
Fnu4HI	GCNGC	2 cut(s)	367, 438
FokI	GGATG	1 cut(s)	133
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	2 cut(s)	367, 438
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	2 cut(s)	367, 438
GsaI	CCCAGC	1 cut(s)	181
GsuI	CTGGAG	1 cut(s)	118
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	2 cut(s)	406, 538
HapII	CCGG	3 cut(s)	45, 186, 403
HhaI	GCGC	1 cut(s)	168
Hin1I	GRCGYC	1 cut(s)	166
Hin1II	CATG	3 cut(s)	391, 490, 537
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HpaII	CCGG	3 cut(s)	45, 186, 403
HphI	GGTGA	2 cut(s)	467, 522
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	1 cut(s)	104
Hpy8I	GTNNAC	1 cut(s)	385
HpyAV	CCTTC	2 cut(s)	505, 537
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4V	TGCA	4 cut(s)	143, 440, 502, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 459
HpyF3I	CTNAG	1 cut(s)	408
Hsp92I	GRCGYC	1 cut(s)	166
Hsp92II	CATG	3 cut(s)	391, 490, 537
HspAI	GCGC	1 cut(s)	166
KasI	GGCGCC	1 cut(s)	165
KroI	GCCGGC	1 cut(s)	402
KroNI	GCCGGC	1 cut(s)	404
Ksp22I	TGATCA	2 cut(s)	124, 340
Kzo9I	GATC	2 cut(s)	124, 340
LmnI	GCTCC	1 cut(s)	56
Lsp1109I	GCAGC	2 cut(s)	378, 424
MabI	ACCWGGT	1 cut(s)	31
MaeIII	GTNAC	4 cut(s)	35, 248, 305, 326
MalI	GATC	2 cut(s)	126, 342
MboI	GATC	2 cut(s)	124, 340
MboII	GAAGA	1 cut(s)	81
MhlI	GDGCHC	1 cut(s)	98
MlsI	TGGCCA	1 cut(s)	538
MluCI	AATT	2 cut(s)	22, 160
MluNI	TGGCCA	1 cut(s)	538
Mly113I	GGCGCC	1 cut(s)	166
MmeI	TCCRAC	1 cut(s)	500
MnlI	CCTC	2 cut(s)	98, 142
Mox20I	TGGCCA	1 cut(s)	538
MroNI	GCCGGC	1 cut(s)	402
MscI	TGGCCA	1 cut(s)	538
MslI	CAYNNNNRTG	1 cut(s)	195
Msp20I	TGGCCA	1 cut(s)	538
MspI	CCGG	3 cut(s)	45, 186, 403
MspR9I	CCNGG	2 cut(s)	33, 136
MvaI	CCWGG	2 cut(s)	33, 136
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	2 cut(s)	172, 459
NaeI	GCCGGC	1 cut(s)	404
NarI	GGCGCC	1 cut(s)	166
NcoI	CCATGG	1 cut(s)	533
NdeII	GATC	2 cut(s)	124, 340
NgoMIV	GCCGGC	1 cut(s)	402
NlaIII	CATG	3 cut(s)	391, 490, 537
NlaIV	GGNNCC	1 cut(s)	167
NmuCI	GTSAC	1 cut(s)	326
OliI	CACNNNNGTG	1 cut(s)	195
PdiI	GCCGGC	1 cut(s)	404
PflMI	CCANNNNNTGG	1 cut(s)	152
PfoI	TCCNGGA	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	368, 439
PluTI	GGCGCC	1 cut(s)	169
Psp6I	CCWGG	2 cut(s)	31, 134
PspFI	CCCAGC	1 cut(s)	177
PspGI	CCWGG	2 cut(s)	31, 134
PspN4I	GGNNCC	1 cut(s)	167
RsaI	GTAC	1 cut(s)	421
RsaNI	GTAC	1 cut(s)	420
RseI	CAYNNNNRTG	1 cut(s)	195
SatI	GCNGC	2 cut(s)	367, 438
Sau3AI	GATC	2 cut(s)	124, 340
ScrFI	CCNGG	2 cut(s)	33, 136
SduI	GDGCHC	1 cut(s)	98
SetI	ASST	6 cut(s)	37, 61, 89, 109, 371, 382
SexAI	ACCWGGT	1 cut(s)	31
SfcI	CTRYAG	3 cut(s)	193, 232, 289
SfoI	GGCGCC	1 cut(s)	167
SgrAI	CRCCGGYG	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	195
Sse9I	AATT	2 cut(s)	22, 160
SsiI	CCGC	4 cut(s)	48, 286, 349, 453
SspDI	GGCGCC	1 cut(s)	165
StyD4I	CCNGG	2 cut(s)	31, 134
StyI	CCWWGG	2 cut(s)	83, 533
TaaI	ACNGT	1 cut(s)	424
TaqI	TCGA	1 cut(s)	92
TasI	AATT	2 cut(s)	22, 160
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	2 cut(s)	366, 437
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	1 cut(s)	372
Van91I	CCANNNNNTGG	1 cut(s)	152
XagI	CCTNNNNNAGG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.