Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014550

Physical Location & Seq

Genomic Coordinates Reverse (-)

3184444 .. 3186284

Gene Structure 1841 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g05570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1647 bp

ATGAGTGAACTGAAACAAATACATGGGGTGATGGTCACTAGCTCAGTCATTAAGAATGTGATCCCATTGAGTAGGGTTATTGATTTCTGTGCTAATTCTGAAGCTGGAGACATCAGCTATGCAAAGTCGGTTTTTCGACGAATTGAGCAGCCCAGTGTCTATATCTGGAACTCAATGATCAGAGGGTACTCGAATAGCGAGAACCCGGTTGAGTGTTTGGTAATGTATAGAGAAATGGTGCATAGAGGTTATGCCCCTGACCATTTTACATTTCCATTTGTGCTCAAAGGGTGTTGCATCGTCAGTGATGTTCATTATGGGAAATGTGTTCATGACTGCATAATGAAAACTGGGTTTGAGTTGAATGTGTATGTCTCTGCTGGTTTACTCAATATGTATGCTTGTTGTGCAGATATGGAATCTGCACAGAAGGTGTTTGATAAAATGCCCAAGTGGAATGTAGTTGCTTGGACTAGTCTGATTTTCGGGTTTGTTGGGAACAATCAAGCTAGTGAGGCTGTAAAGGTGTTCAAGGACATGGAACTTTGTAATGTCGAGCCTAATGAGATTACTATGGTCAATGTCTTAGTTGCTTGTGCTCGAAGTAGGGATATTGATAGTGGGAAGTGGGTTCACAGTCGTATTCGCCAACTTGGGTTTGATCCGTTCGGTTTGAGTTTTGATTTTAATGTGATTCTTGCAACTGCCATTGTAGACATGTATGCAAAATGTGGCAGCTTGAAGACAGCAAGGCATCTGTTCGACAAGATGCCTGACAGAAACTTGGTTGCCTGGAATTCCATGATCGGTGCCTACAATCAATATGGCCAGGGTGATAAAGCGGTTGATCTGTTTTTTGATATGCGGCATGCTGGGTTTGTTCCGGACCAAACTACCATATTGGGTGTGATTGGTTCTTGTGCGCAGTTGGGGGCTTTGGCATTGGGACAAAGTCTTCATTCGTGTGTATCAAAAACTGGCATAGGCACAAATGCTTCTATTGTAACTGCTTTAGTGGACATGTATACAAAAAATGGGGATGCAGGCAGTGCTCAACGAATTTTTGAGAATTTGCAGAAGAAAGATGTAATGGCATGGACTAGTATGATTGTCGGATTAGCTATGCATGGGCATGCTACAGAAGCACTGCATAATTTTAGAAAAATGCAAGAGGATGCTAGTGTTATTCCAGACCAGATCACTTATATTGGGGTTTTATGTGCGTGTAGCCATGTTGGACTTGTGGAGGAGGGTCAGAGACACTTTCGCTCAATGGTAGATGTTTATGGCATAACACCAACTGTAGAGCATTACGGCTGCATGATTGATCTTTTGAGTCGTGCAGGCCGGTTTGAAGAGGCGGTGAGACTACTGGAAAAAATGCCAATTCAACCCAATATTGCAATATGGGGAGCTCTCTTAAATGGGTGTGAGATATATGAAAATGTAGATCTAGCTAACAAATTTAAAAGATACATAACAGAGTTGGAGCCTCGTTTTAGTGGAGTTCTGGTTCTTCTTTCCAACATATATGCTAGGGCTGGAAGATGGCAAGAAGTAAAGCTGACAAGAGAATTGATGAAAGATAGGAGGATTGCTAAAAGTCTTGGATGTAGTTCAGTTGAAATGAAATTGTTAAGCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

549

Amino Acids

61.13

Weight (kDa)

6.93

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	51 - 99	1.7e-11	PPR repeat family
PPR	PF01535	55 - 83	5.3e-06	PPR repeat
PPR_2	PF13041	153 - 200	3.4e-09	PPR repeat family
PPR_2	PF13041	261 - 308	2.4e-08	PPR repeat family
PPR	PF01535	263 - 293	2e-06	PPR repeat
PPR_1	PF12854	430 - 461	2.1e-06	PPR repeat
E_motif	PF20431	480 - 542	7.5e-15	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05240
fragaria_vesca	FvH4_6g05570
malus_domestica	MD12G1221500.v1.1
prunus_persica	Prupe.6G328300_v2.0.a1
pyrus_communis	pycom12g20770
rosa_chinensis	RchiOBHm_Chr3g0454351
rosa_laevigata	RLG00000025451 RLG00000025452 RLG00000025458
rosa_multiflora	Rmu_sc0000006.1_g000021 Rmu_sc0007209.1_g000013
rosa_roxburghii	Rroxscaffold_165G00437180 Rroxscaffold_6G00425180
rosa_rugosa	Rorug02G0654500
rosa_samantha	Rh3BG060200 Rh3DG060600
rosa_wichuraiana	Rw3G004500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	924
AccB1I	GGYRCC	1 cut(s)	809
AccI	GTMKAC	2 cut(s)	714, 1025
AccIII	TCCGGA	1 cut(s)	883
AciI	CCGC	3 cut(s)	842, 865, 1361
AclWI	GGATC	2 cut(s)	55, 656
AcoI	YGGCCR	1 cut(s)	826
AcsI	RAATTY	4 cut(s)	796, 1059, 1069, 1463
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	1 cut(s)	188
AflIII	ACRYGT	2 cut(s)	717, 1020
AgsI	TTSAA	6 cut(s)	364, 532, 742, 1355, 1391, 1625
AhlI	ACTAGT	2 cut(s)	473, 1100
AjnI	CCWGG	2 cut(s)	791, 828
AloI	GAACNNNNNNTCC	2 cut(s)	1497, 1529
Alw21I	GWGCWC	4 cut(s)	285, 601, 1054, 1417
Alw26I	GTCTC	4 cut(s)	102, 379, 1252, 1360
AlwI	GGATC	2 cut(s)	55, 656
Aor13HI	TCCGGA	1 cut(s)	883
AoxI	GGCC	2 cut(s)	826, 1345
ApeKI	GCWGC	3 cut(s)	148, 735, 1317
ApoI	RAATTY	4 cut(s)	796, 1059, 1069, 1463
AspLEI	GCGC	1 cut(s)	925
AspS9I	GGNCC	1 cut(s)	886
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	3 cut(s)	40, 845, 1375
AvaII	GGWCC	1 cut(s)	886
BalI	TGGCCA	1 cut(s)	828
BanI	GGYRCC	1 cut(s)	809
BanII	GRGCYC	1 cut(s)	1417
BbsI	GAAGAC	2 cut(s)	749, 947
Bbv12I	GWGCWC	4 cut(s)	285, 601, 1054, 1417
BbvI	GCAGC	3 cut(s)	160, 747, 1304
BccI	CCATC	2 cut(s)	25, 1542
BceAI	ACGGC	1 cut(s)	1330
BciT130I	CCWGG	2 cut(s)	793, 830
BclI	TGATCA	1 cut(s)	177
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	4 cut(s)	102, 379, 1252, 1360
BcuI	ACTAGT	2 cut(s)	473, 1100
BfaI	CTAG	7 cut(s)	39, 474, 510, 1101, 1179, 1454, 1536
BfmI	CTRYAG	2 cut(s)	1137, 1302
BglII	AGATCT	1 cut(s)	1450
BisI	GCNGC	4 cut(s)	149, 736, 866, 1318
BlsI	GCNGC	4 cut(s)	150, 737, 867, 1319
Bme1390I	CCNGG	3 cut(s)	206, 793, 830
Bme18I	GGWCC	1 cut(s)	886
BmgT120I	GGNCC	1 cut(s)	886
BmiI	GGNNCC	2 cut(s)	811, 1491
BmrFI	CCNGG	3 cut(s)	206, 793, 830
BmrI	ACTGGG	2 cut(s)	147, 360
BmsI	GCATC	5 cut(s)	306, 759, 763, 1030, 1165
BmuI	ACTGGG	2 cut(s)	147, 360
BpiI	GAAGAC	2 cut(s)	749, 947
BpmI	CTGGAG	1 cut(s)	126
BpuMI	CCSGG	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	829
BsaWI	WCCGGW	1 cut(s)	883
BsaXI	ACNNNNNCTCC	2 cut(s)	1497, 1527
Bse118I	RCCGGY	1 cut(s)	1347
Bse1I	ACTGG	4 cut(s)	153, 355, 982, 1377
BseAI	TCCGGA	1 cut(s)	883
BseBI	CCWGG	2 cut(s)	793, 830
BseDI	CCNNGG	1 cut(s)	829
BseGI	GGATG	3 cut(s)	1045, 1180, 1616
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	4 cut(s)	153, 355, 982, 1377
BseRI	GAGGAG	1 cut(s)	1262
BseXI	GCAGC	3 cut(s)	160, 747, 1304
BseYI	CCCAGC	1 cut(s)	872
BsgI	GTGCAG	3 cut(s)	408, 429, 1362
BshFI	GGCC	2 cut(s)	828, 1347
BshNI	GGYRCC	1 cut(s)	809
BsiHKAI	GWGCWC	4 cut(s)	285, 601, 1054, 1417
BsiSI	CCGG	3 cut(s)	206, 884, 1348
BslFI	GGGAC	1 cut(s)	960
BsmAI	GTCTC	4 cut(s)	102, 379, 1252, 1360
BsmFI	GGGAC	1 cut(s)	960
BsnI	GGCC	2 cut(s)	828, 1347
Bsp1286I	GDGCHC	4 cut(s)	285, 601, 1054, 1417
Bsp13I	TCCGGA	1 cut(s)	883
Bsp143I	GATC	8 cut(s)	60, 177, 661, 804, 847, 1197, 1327, 1450
BspACI	CCGC	3 cut(s)	842, 865, 1361
BspANI	GGCC	2 cut(s)	828, 1347
BspCNI	CTCAG	1 cut(s)	56
BspEI	TCCGGA	1 cut(s)	883
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	811, 1491
BspPI	GGATC	2 cut(s)	55, 656
BspT107I	GGYRCC	1 cut(s)	809
BsrFI	RCCGGY	1 cut(s)	1347
BsrI	ACTGG	4 cut(s)	153, 355, 982, 1377
BssAI	RCCGGY	1 cut(s)	1347
BssECI	CCNNGG	1 cut(s)	829
BssMI	GATC	8 cut(s)	60, 177, 661, 804, 847, 1197, 1327, 1450
BssNAI	GTATAC	1 cut(s)	1026
Bst1107I	GTATAC	1 cut(s)	1026
Bst2UI	CCWGG	2 cut(s)	793, 830
Bst4CI	ACNGT	2 cut(s)	638, 1303
Bst6I	CTCTTC	1 cut(s)	1350
BstAPI	GCANNNNNTGC	1 cut(s)	1049
BstC8I	GCNNGC	4 cut(s)	870, 1045, 1134, 1345
BstDEI	CTNAG	2 cut(s)	43, 586
BstF5I	GGATG	3 cut(s)	1045, 1180, 1616
BstHHI	GCGC	1 cut(s)	925
BstKTI	GATC	8 cut(s)	63, 180, 664, 807, 850, 1200, 1330, 1453
BstMAI	GTCTC	4 cut(s)	102, 379, 1252, 1360
BstMBI	GATC	8 cut(s)	60, 177, 661, 804, 847, 1197, 1327, 1450
BstMWI	GCNNNNNNNGC	4 cut(s)	407, 515, 1049, 1142
BstNI	CCWGG	2 cut(s)	793, 830
BstNSI	RCATGY	4 cut(s)	721, 872, 1024, 1136
BstSCI	CCNGG	3 cut(s)	204, 791, 828
BstSFI	CTRYAG	2 cut(s)	1137, 1302
BstV1I	GCAGC	3 cut(s)	160, 747, 1304
BstV2I	GAAGAC	2 cut(s)	749, 947
BstX2I	RGATCY	1 cut(s)	1450
BstYI	RGATCY	1 cut(s)	1450
BstZ17I	GTATAC	1 cut(s)	1026
BsuRI	GGCC	2 cut(s)	828, 1347
BtsCI	GGATG	3 cut(s)	1045, 1180, 1616
BtsI	GCAGTG	2 cut(s)	1054, 1145
BtsIMutI	CAGTG	4 cut(s)	160, 310, 1054, 1145
Cac8I	GCNNGC	4 cut(s)	870, 1045, 1134, 1345
CciI	TCATGA	1 cut(s)	331
CfoI	GCGC	1 cut(s)	925
Cfr10I	RCCGGY	1 cut(s)	1347
Cfr13I	GGNCC	1 cut(s)	886
Csp6I	GTAC	1 cut(s)	187
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	2 cut(s)	43, 586
DpnI	GATC	8 cut(s)	62, 179, 663, 806, 849, 1199, 1329, 1452
DpnII	GATC	8 cut(s)	60, 177, 661, 804, 847, 1197, 1327, 1450
DraI	TTTAAA	1 cut(s)	1468
EaeI	YGGCCR	1 cut(s)	826
Eam1104I	CTCTTC	1 cut(s)	1350
EarI	CTCTTC	1 cut(s)	1350
Ecl136II	GAGCTC	1 cut(s)	1415
Eco24I	GRGCYC	1 cut(s)	1417
Eco47I	GGWCC	1 cut(s)	886
Eco53kI	GAGCTC	1 cut(s)	1415
Eco57I	CTGAAG	1 cut(s)	120
EcoICRI	GAGCTC	1 cut(s)	1415
EcoRI	GAATTC	1 cut(s)	796
EcoRII	CCWGG	2 cut(s)	791, 828
EcoT22I	ATGCAT	1 cut(s)	1128
EcoT38I	GRGCYC	1 cut(s)	1417
FaqI	GGGAC	1 cut(s)	960
FbaI	TGATCA	1 cut(s)	177
FblI	GTMKAC	2 cut(s)	714, 1025
Fnu4HI	GCNGC	4 cut(s)	149, 736, 866, 1318
FokI	GGATG	3 cut(s)	1052, 1187, 1623
FriOI	GRGCYC	1 cut(s)	1417
Fsp4HI	GCNGC	4 cut(s)	149, 736, 866, 1318
FspBI	CTAG	7 cut(s)	39, 474, 510, 1101, 1179, 1454, 1536
FspI	TGCGCA	1 cut(s)	924
GlaI	GCGC	1 cut(s)	924
GluI	GCNGC	4 cut(s)	149, 736, 866, 1318
GsaI	CCCAGC	1 cut(s)	876
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	828, 1347
HapII	CCGG	3 cut(s)	206, 884, 1348
HhaI	GCGC	1 cut(s)	925
Hin6I	GCGC	1 cut(s)	923
HinP1I	GCGC	1 cut(s)	923
HinfI	GANTC	3 cut(s)	419, 694, 1336
HpaII	CCGG	3 cut(s)	206, 884, 1348
HphI	GGTGA	3 cut(s)	40, 845, 1375
Hpy166II	GTNNAC	6 cut(s)	8, 386, 634, 715, 1018, 1026
Hpy188I	TCNGA	5 cut(s)	100, 182, 480, 1115, 1257
Hpy188III	TCNNGA	4 cut(s)	166, 332, 884, 1190
Hpy8I	GTNNAC	6 cut(s)	8, 386, 634, 715, 1018, 1026
Hpy99I	CGWCG	1 cut(s)	141
HpyAV	CCTTC	1 cut(s)	424
HpyCH4III	ACNGT	2 cut(s)	638, 1303
HpyF10VI	GCNNNNNNNGC	4 cut(s)	407, 515, 1049, 1142
HpyF3I	CTNAG	2 cut(s)	43, 586
HspAI	GCGC	1 cut(s)	923
Kpn2I	TCCGGA	1 cut(s)	883
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	8 cut(s)	60, 177, 661, 804, 847, 1197, 1327, 1450
LmnI	GCTCC	2 cut(s)	1412, 1489
Lsp1109I	GCAGC	3 cut(s)	160, 747, 1304
LweI	GCATC	5 cut(s)	306, 759, 763, 1030, 1165
MaeI	CTAG	7 cut(s)	39, 474, 510, 1101, 1179, 1454, 1536
MaeIII	GTNAC	2 cut(s)	34, 1003
MalI	GATC	8 cut(s)	62, 179, 663, 806, 849, 1199, 1329, 1452
MboI	GATC	8 cut(s)	60, 177, 661, 804, 847, 1197, 1327, 1450
MboII	GAAGA	6 cut(s)	754, 947, 1090, 1367, 1508, 1557
MflI	RGATCY	1 cut(s)	1450
MhlI	GDGCHC	4 cut(s)	285, 601, 1054, 1417
MlsI	TGGCCA	1 cut(s)	828
MluNI	TGGCCA	1 cut(s)	828
MlyI	GAGTC	1 cut(s)	1345
MmeI	TCCRAC	4 cut(s)	1093, 1216, 1467, 1548
MnlI	CCTC	9 cut(s)	176, 239, 508, 1165, 1240, 1243, 1351, 1503, 1584
Mox20I	TGGCCA	1 cut(s)	828
Mph1103I	ATGCAT	1 cut(s)	1128
MroI	TCCGGA	1 cut(s)	883
MscI	TGGCCA	1 cut(s)	828
MseI	TTAA	5 cut(s)	51, 687, 1421, 1467, 1637
MslI	CAYNNNNRTG	2 cut(s)	963, 1131
Msp20I	TGGCCA	1 cut(s)	828
MspI	CCGG	3 cut(s)	206, 884, 1348
MspR9I	CCNGG	3 cut(s)	206, 793, 830
MvaI	CCWGG	2 cut(s)	793, 830
MwoI	GCNNNNNNNGC	4 cut(s)	407, 515, 1049, 1142
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	8 cut(s)	60, 177, 661, 804, 847, 1197, 1327, 1450
NlaIV	GGNNCC	2 cut(s)	811, 1491
NmuCI	GTSAC	1 cut(s)	34
NsbI	TGCGCA	1 cut(s)	924
NsiI	ATGCAT	1 cut(s)	1128
NspI	RCATGY	4 cut(s)	721, 872, 1024, 1136
PaeI	GCATGC	2 cut(s)	872, 1136
PagI	TCATGA	1 cut(s)	331
PciI	ACATGT	2 cut(s)	717, 1020
PfeI	GAWTC	2 cut(s)	419, 694
PflFI	GACNNNGTC	1 cut(s)	951
PkrI	GCNGC	4 cut(s)	150, 737, 867, 1319
PleI	GAGTC	1 cut(s)	1344
PpsI	GAGTC	1 cut(s)	1344
PscI	ACATGT	2 cut(s)	717, 1020
Psp124BI	GAGCTC	1 cut(s)	1417
Psp6I	CCWGG	2 cut(s)	791, 828
PspFI	CCCAGC	1 cut(s)	872
PspGI	CCWGG	2 cut(s)	791, 828
PspN4I	GGNNCC	2 cut(s)	811, 1491
PspPI	GGNCC	1 cut(s)	886
PsuI	RGATCY	1 cut(s)	1450
PsyI	GACNNNGTC	1 cut(s)	951
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	2 cut(s)	963, 1131
SacI	GAGCTC	1 cut(s)	1417
SaqAI	TTAA	5 cut(s)	51, 687, 1421, 1467, 1637
SatI	GCNGC	4 cut(s)	149, 736, 866, 1318
Sau3AI	GATC	8 cut(s)	60, 177, 661, 804, 847, 1197, 1327, 1450
Sau96I	GGNCC	1 cut(s)	886
SchI	GAGTC	1 cut(s)	1345
ScrFI	CCNGG	3 cut(s)	206, 793, 830
SduI	GDGCHC	4 cut(s)	285, 601, 1054, 1417
SfaNI	GCATC	5 cut(s)	306, 759, 763, 1030, 1165
SfcI	CTRYAG	2 cut(s)	1137, 1302
SinI	GGWCC	1 cut(s)	886
SmiMI	CAYNNNNRTG	2 cut(s)	963, 1131
SpeI	ACTAGT	2 cut(s)	473, 1100
SphI	GCATGC	2 cut(s)	872, 1136
SsiI	CCGC	3 cut(s)	842, 865, 1361
SspI	AATATT	1 cut(s)	1399
SspMI	CTAG	7 cut(s)	39, 474, 510, 1101, 1179, 1454, 1536
SstI	GAGCTC	1 cut(s)	1417
StyD4I	CCNGG	3 cut(s)	204, 791, 828
TaaI	ACNGT	2 cut(s)	638, 1303
TaqI	TCGA	5 cut(s)	136, 191, 555, 601, 762
TauI	GCSGC	1 cut(s)	868
TfiI	GAWTC	2 cut(s)	419, 694
Tru1I	TTAA	5 cut(s)	51, 687, 1421, 1467, 1637
Tru9I	TTAA	5 cut(s)	51, 687, 1421, 1467, 1637
TscAI	CASTG	4 cut(s)	160, 310, 1054, 1152
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	3 cut(s)	148, 735, 1317
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	7 cut(s)	302, 320, 359, 947, 1455, 1595, 1643
TspGWI	ACGGA	1 cut(s)	654
TspRI	CASTG	4 cut(s)	160, 310, 1054, 1152
Tth111I	GACNNNGTC	1 cut(s)	951
VpaK11BI	GGWCC	1 cut(s)	886
XapI	RAATTY	4 cut(s)	796, 1059, 1069, 1463
XceI	RCATGY	4 cut(s)	721, 872, 1024, 1136
XmiI	GTMKAC	2 cut(s)	714, 1025
XspI	CTAG	7 cut(s)	39, 474, 510, 1101, 1179, 1454, 1536
Zsp2I	ATGCAT	1 cut(s)	1128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.