Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0014550

Physical Location & Seq

Genomic Coordinates Forward (+)

45819412 .. 45820685

Gene Structure 1274 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025452

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGAACTTTGTAATGTCGAGCCTAATGAGATTACGATGGTCAATGTCTTAGTTGCCTGTGCTCGAAGTAGGGATATCAGTACTGGGAAGTGGGTTCACAGTCGTATTCGCCAACTTGGGTTTGATCCCTTTGGATCGAGTTTTGGTTTTAATGTGATTCTTGCTACTGCCATTGTAGATATGTATGCAAAATGTGGCAGCTTGAGAACAGCAAGGCATCTGTTTGACAAGATGCCTGACAGAAACTTGGTTGCCTGGAATTCCATGATCAGTGCCTACAATCAATATGGCCAGGGTGATAAAGCGATTGATCTCTTTTTTGAAATGCGGATTGCTGGGTTTGTTCCGGACCAAGCTACCTTTCTGGGTGTGATTGGTTCTTGTGCACAGTTGGGGGCTTTGGCATTGGGACAAAGTCTTCATTCGTATGTATTAAAAACTAGCATAGGCACAGATGATTCTATTGGAACTGCTTTAGTGGACATGTTTACGAAAATTGGAGATGCAGGCAGTGCTCGAACAATTTTTGACAATTTGCACAAGAAAGATGTAATGGCATGGACTAGTATGATTGTTGGTTTAGCAATGCACGGGCATGCTGTGGAAGCACTGCATACTTTTAGAAGAATGCAAGAAGATGCTAGTGTTATTCCTGACCAGATCACTTATATTGGGGTTTTATGCGCGTGTAGCCATGTTGGGCTTGTGGAGGAGGGACAGAGACACTTTGGCTCAATGGTGGATGTTTATGGCGTAAAACCAACTGCAGAGCATTACGGCTGCATGGTTGATCTTCTGAGTCGAGCAGGCCGGTTTGAAGAGGCAGTGAAACTACTGGAAGAAATGCCAATTCAACCCAATGTTGCTATATGGGGAGCTCTCTTAAATGGGTGTGAGATATATGAAAATGTAGATCTGGCTGACCAAGTTAGAAGATACATCACAGAGTTGGAGCCTCATGTTAGTGGTGTCTTGGTCCTTCTTTCCAATATATATGCTAGGGCTGGAAGATGGCAAGAAGTAAAGCTAACTAGAGAATTGATGAAAGATAGGAGGATTGCCAAAAGTCTTGGATTTCTAATCCAGGGTGTAAAGCTTGCAATCAACCCGAAGTTCAAGAATGTCATTCTGGAGAGTGACTGCAAAGAACTTGTTGATGCCCTCAACAACAATATCAAGAGAGGCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

397

Amino Acids

43.83

Weight (kDa)

6.27

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	82 - 129	1.8e-09	PPR repeat family
PPR	PF01535	84 - 113	2.2e-07	PPR repeat
PPR_1	PF12854	251 - 282	3.3e-06	PPR repeat
E_motif	PF20431	301 - 356	1.8e-12	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05240
fragaria_vesca	FvH4_6g05570
malus_domestica	MD12G1221500.v1.1
prunus_persica	Prupe.6G328300_v2.0.a1
pyrus_communis	pycom12g20770
rosa_chinensis	RchiOBHm_Chr3g0454351
rosa_laevigata	RLG00000025451 RLG00000025452 RLG00000025458
rosa_multiflora	Rmu_sc0000006.1_g000021 Rmu_sc0007209.1_g000013
rosa_roxburghii	Rroxscaffold_165G00437180 Rroxscaffold_6G00425180
rosa_rugosa	Rorug02G0654500
rosa_samantha	Rh3BG060200 Rh3DG060600
rosa_wichuraiana	Rw3G004500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	686
AccIII	TCCGGA	1 cut(s)	346
AciI	CCGC	1 cut(s)	328
AclWI	GGATC	2 cut(s)	119, 142
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	259
AfaI	GTAC	1 cut(s)	82
AflIII	ACRYGT	1 cut(s)	483
AgsI	TTSAA	4 cut(s)	323, 818, 854, 1117
AhlI	ACTAGT	1 cut(s)	563
AjnI	CCWGG	3 cut(s)	254, 291, 1083
AjuI	GAANNNNNNNTTGG	2 cut(s)	345, 377
AluBI	AGCT	5 cut(s)	201, 356, 878, 1027, 1096
AluI	AGCT	5 cut(s)	201, 356, 878, 1027, 1096
Alw21I	GWGCWC	4 cut(s)	64, 388, 517, 880
Alw26I	GTCTC	1 cut(s)	715
Alw44I	GTGCAC	1 cut(s)	384
AlwI	GGATC	2 cut(s)	119, 142
Aor13HI	TCCGGA	1 cut(s)	346
AoxI	GGCC	2 cut(s)	289, 808
ApaLI	GTGCAC	1 cut(s)	384
ApeKI	GCWGC	2 cut(s)	198, 780
ApoI	RAATTY	1 cut(s)	259
AspLEI	GCGC	1 cut(s)	686
AspS9I	GGNCC	2 cut(s)	349, 976
AsuHPI	GGTGA	1 cut(s)	308
AvaII	GGWCC	2 cut(s)	349, 976
BaeGI	GKGCMC	1 cut(s)	388
BalI	TGGCCA	1 cut(s)	291
BanII	GRGCYC	1 cut(s)	880
BbsI	GAAGAC	1 cut(s)	410
Bbv12I	GWGCWC	4 cut(s)	64, 388, 517, 880
BbvI	GCAGC	2 cut(s)	210, 767
BccI	CCATC	2 cut(s)	31, 1005
BceAI	ACGGC	1 cut(s)	793
BciT130I	CCWGG	3 cut(s)	256, 293, 1085
BclI	TGATCA	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	715
BcuI	ACTAGT	1 cut(s)	563
BfaI	CTAG	5 cut(s)	441, 564, 642, 999, 1032
BfmI	CTRYAG	1 cut(s)	765
BglII	AGATCT	1 cut(s)	913
BisI	GCNGC	2 cut(s)	199, 781
BlsI	GCNGC	2 cut(s)	200, 782
BmcAI	AGTACT	1 cut(s)	82
Bme1390I	CCNGG	3 cut(s)	256, 293, 1085
Bme18I	GGWCC	2 cut(s)	349, 976
BmgT120I	GGNCC	2 cut(s)	349, 976
BmiI	GGNNCC	1 cut(s)	954
BmrFI	CCNGG	3 cut(s)	256, 293, 1085
BmrI	ACTGGG	1 cut(s)	93
BmsI	GCATC	5 cut(s)	222, 226, 493, 628, 1147
BmuI	ACTGGG	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	410
BpmI	CTGGAG	1 cut(s)	1151
BpuEI	CTTGAG	1 cut(s)	223
BsaJI	CCNNGG	2 cut(s)	292, 1084
BsaWI	WCCGGW	1 cut(s)	346
Bse118I	RCCGGY	1 cut(s)	810
Bse1I	ACTGG	2 cut(s)	88, 840
Bse3DI	GCAATG	1 cut(s)	591
BseAI	TCCGGA	1 cut(s)	346
BseBI	CCWGG	3 cut(s)	256, 293, 1085
BseDI	CCNNGG	2 cut(s)	292, 1084
BseGI	GGATG	1 cut(s)	748
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	1 cut(s)	788
BseNI	ACTGG	2 cut(s)	88, 840
BseRI	GAGGAG	1 cut(s)	725
BseSI	GKGCMC	1 cut(s)	388
BseXI	GCAGC	2 cut(s)	210, 767
BseYI	CCCAGC	1 cut(s)	335
Bsh1236I	CGCG	1 cut(s)	686
BshFI	GGCC	2 cut(s)	291, 810
BsiHKAI	GWGCWC	4 cut(s)	64, 388, 517, 880
BsiSI	CCGG	2 cut(s)	347, 811
BslFI	GGGAC	2 cut(s)	423, 729
BsmAI	GTCTC	1 cut(s)	715
BsmFI	GGGAC	2 cut(s)	423, 729
BsmI	GAATGC	1 cut(s)	633
BsnI	GGCC	2 cut(s)	291, 810
Bsp1286I	GDGCHC	4 cut(s)	64, 388, 517, 880
Bsp13I	TCCGGA	1 cut(s)	346
Bsp143I	GATC	7 cut(s)	124, 134, 267, 310, 660, 790, 913
BspACI	CCGC	1 cut(s)	328
BspANI	GGCC	2 cut(s)	291, 810
BspCNI	CTCAG	1 cut(s)	789
BspEI	TCCGGA	1 cut(s)	346
BspFNI	CGCG	1 cut(s)	686
BspLI	GGNNCC	1 cut(s)	954
BspMAI	CTGCAG	1 cut(s)	769
BspPI	GGATC	2 cut(s)	119, 142
BsrDI	GCAATG	1 cut(s)	591
BsrFI	RCCGGY	1 cut(s)	810
BsrI	ACTGG	2 cut(s)	88, 840
BssAI	RCCGGY	1 cut(s)	810
BssECI	CCNNGG	2 cut(s)	292, 1084
BssMI	GATC	7 cut(s)	124, 134, 267, 310, 660, 790, 913
Bst2UI	CCWGG	3 cut(s)	256, 293, 1085
Bst4CI	ACNGT	2 cut(s)	101, 390
Bst6I	CTCTTC	1 cut(s)	813
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstC8I	GCNNGC	4 cut(s)	508, 597, 808, 1098
BstDEI	CTNAG	2 cut(s)	49, 797
BstF5I	GGATG	1 cut(s)	748
BstFNI	CGCG	1 cut(s)	686
BstHHI	GCGC	1 cut(s)	686
BstKTI	GATC	7 cut(s)	127, 137, 270, 313, 663, 793, 916
BstMAI	GTCTC	1 cut(s)	715
BstMBI	GATC	7 cut(s)	124, 134, 267, 310, 660, 790, 913
BstMWI	GCNNNNNNNGC	3 cut(s)	512, 605, 690
BstNI	CCWGG	3 cut(s)	256, 293, 1085
BstNSI	RCATGY	2 cut(s)	487, 599
BstSCI	CCNGG	3 cut(s)	254, 291, 1083
BstSFI	CTRYAG	1 cut(s)	765
BstSLI	GKGCMC	1 cut(s)	388
BstUI	CGCG	1 cut(s)	686
BstV1I	GCAGC	2 cut(s)	210, 767
BstV2I	GAAGAC	1 cut(s)	410
BstX2I	RGATCY	1 cut(s)	913
BstYI	RGATCY	1 cut(s)	913
BsuRI	GGCC	2 cut(s)	291, 810
BtsCI	GGATG	1 cut(s)	748
BtsI	GCAGTG	3 cut(s)	517, 608, 831
BtsIMutI	CAGTG	4 cut(s)	277, 517, 608, 831
Cac8I	GCNNGC	4 cut(s)	508, 597, 808, 1098
CfoI	GCGC	1 cut(s)	686
Cfr10I	RCCGGY	1 cut(s)	810
Cfr13I	GGNCC	2 cut(s)	349, 976
Csp6I	GTAC	1 cut(s)	81
CviAII	CATG	7 cut(s)	265, 484, 558, 596, 695, 784, 959
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	2 cut(s)	49, 797
DpnI	GATC	7 cut(s)	126, 136, 269, 312, 662, 792, 915
DpnII	GATC	7 cut(s)	124, 134, 267, 310, 660, 790, 913
EaeI	YGGCCR	1 cut(s)	289
Eam1104I	CTCTTC	1 cut(s)	813
EarI	CTCTTC	1 cut(s)	813
Ecl136II	GAGCTC	1 cut(s)	878
Eco24I	GRGCYC	1 cut(s)	880
Eco32I	GATATC	1 cut(s)	76
Eco47I	GGWCC	2 cut(s)	349, 976
Eco53kI	GAGCTC	1 cut(s)	878
EcoICRI	GAGCTC	1 cut(s)	878
EcoRI	GAATTC	1 cut(s)	259
EcoRII	CCWGG	3 cut(s)	254, 291, 1083
EcoRV	GATATC	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	880
FaeI	CATG	7 cut(s)	268, 487, 561, 599, 698, 787, 962
FaqI	GGGAC	2 cut(s)	423, 729
FatI	CATG	7 cut(s)	264, 483, 557, 595, 694, 783, 958
FbaI	TGATCA	1 cut(s)	267
Fnu4HI	GCNGC	2 cut(s)	199, 781
FokI	GGATG	1 cut(s)	755
FriOI	GRGCYC	1 cut(s)	880
Fsp4HI	GCNGC	2 cut(s)	199, 781
FspBI	CTAG	5 cut(s)	441, 564, 642, 999, 1032
GlaI	GCGC	1 cut(s)	685
GluI	GCNGC	2 cut(s)	199, 781
GsaI	CCCAGC	1 cut(s)	339
GsuI	CTGGAG	1 cut(s)	1151
HaeIII	GGCC	2 cut(s)	291, 810
HapII	CCGG	2 cut(s)	347, 811
HhaI	GCGC	1 cut(s)	686
Hin1II	CATG	7 cut(s)	268, 487, 561, 599, 698, 787, 962
Hin6I	GCGC	1 cut(s)	684
HinP1I	GCGC	1 cut(s)	684
HindIII	AAGCTT	1 cut(s)	1094
HinfI	GANTC	3 cut(s)	157, 458, 799
HpaII	CCGG	2 cut(s)	347, 811
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	4 cut(s)	97, 386, 481, 489
Hpy188I	TCNGA	1 cut(s)	798
Hpy188III	TCNNGA	5 cut(s)	347, 653, 1117, 1130, 1177
Hpy8I	GTNNAC	4 cut(s)	97, 386, 481, 489
HpyAV	CCTTC	1 cut(s)	989
HpyCH4III	ACNGT	2 cut(s)	101, 390
HpyF10VI	GCNNNNNNNGC	3 cut(s)	512, 605, 690
HpyF3I	CTNAG	2 cut(s)	49, 797
Hsp92II	CATG	7 cut(s)	268, 487, 561, 599, 698, 787, 962
HspAI	GCGC	1 cut(s)	684
Kpn2I	TCCGGA	1 cut(s)	346
Ksp22I	TGATCA	1 cut(s)	267
Kzo9I	GATC	7 cut(s)	124, 134, 267, 310, 660, 790, 913
LmnI	GCTCC	2 cut(s)	875, 952
Lsp1109I	GCAGC	2 cut(s)	210, 767
LweI	GCATC	5 cut(s)	222, 226, 493, 628, 1147
MaeI	CTAG	5 cut(s)	441, 564, 642, 999, 1032
MaeIII	GTNAC	1 cut(s)	1136
MalI	GATC	7 cut(s)	126, 136, 269, 312, 662, 792, 915
MboI	GATC	7 cut(s)	124, 134, 267, 310, 660, 790, 913
MboII	GAAGA	8 cut(s)	410, 636, 647, 785, 830, 851, 945, 1020
MflI	RGATCY	1 cut(s)	913
MhlI	GDGCHC	4 cut(s)	64, 388, 517, 880
MlsI	TGGCCA	1 cut(s)	291
MluCI	AATT	7 cut(s)	259, 495, 522, 532, 849, 1037, 1186
MluNI	TGGCCA	1 cut(s)	291
MlyI	GAGTC	1 cut(s)	808
MmeI	TCCRAC	1 cut(s)	930
MnlI	CCTC	7 cut(s)	703, 706, 814, 966, 1047, 1172, 1175
Mox20I	TGGCCA	1 cut(s)	291
MroI	TCCGGA	1 cut(s)	346
MscI	TGGCCA	1 cut(s)	291
MseI	TTAA	3 cut(s)	150, 434, 884
MslI	CAYNNNNRTG	3 cut(s)	426, 594, 963
Msp20I	TGGCCA	1 cut(s)	291
MspI	CCGG	2 cut(s)	347, 811
MspR9I	CCNGG	3 cut(s)	256, 293, 1085
Mva1269I	GAATGC	1 cut(s)	633
MvaI	CCWGG	3 cut(s)	256, 293, 1085
MvnI	CGCG	1 cut(s)	686
MwoI	GCNNNNNNNGC	3 cut(s)	512, 605, 690
NdeII	GATC	7 cut(s)	124, 134, 267, 310, 660, 790, 913
NlaIII	CATG	7 cut(s)	268, 487, 561, 599, 698, 787, 962
NlaIV	GGNNCC	1 cut(s)	954
NmuCI	GTSAC	1 cut(s)	1136
NspI	RCATGY	2 cut(s)	487, 599
PaeI	GCATGC	1 cut(s)	599
PciI	ACATGT	1 cut(s)	483
PctI	GAATGC	1 cut(s)	633
PfeI	GAWTC	2 cut(s)	157, 458
PflFI	GACNNNGTC	1 cut(s)	414
PkrI	GCNGC	2 cut(s)	200, 782
PleI	GAGTC	1 cut(s)	807
PpsI	GAGTC	1 cut(s)	807
PscI	ACATGT	1 cut(s)	483
Psp124BI	GAGCTC	1 cut(s)	880
Psp6I	CCWGG	3 cut(s)	254, 291, 1083
PspFI	CCCAGC	1 cut(s)	335
PspGI	CCWGG	3 cut(s)	254, 291, 1083
PspN4I	GGNNCC	1 cut(s)	954
PspPI	GGNCC	2 cut(s)	349, 976
PstI	CTGCAG	1 cut(s)	769
PsuI	RGATCY	1 cut(s)	913
PsyI	GACNNNGTC	1 cut(s)	414
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
RseI	CAYNNNNRTG	3 cut(s)	426, 594, 963
SacI	GAGCTC	1 cut(s)	880
SaqAI	TTAA	3 cut(s)	150, 434, 884
SatI	GCNGC	2 cut(s)	199, 781
Sau3AI	GATC	7 cut(s)	124, 134, 267, 310, 660, 790, 913
Sau96I	GGNCC	2 cut(s)	349, 976
ScaI	AGTACT	1 cut(s)	82
SchI	GAGTC	1 cut(s)	808
ScrFI	CCNGG	3 cut(s)	256, 293, 1085
SduI	GDGCHC	4 cut(s)	64, 388, 517, 880
SetI	ASST	6 cut(s)	203, 358, 362, 880, 1029, 1098
SfaNI	GCATC	5 cut(s)	222, 226, 493, 628, 1147
SfcI	CTRYAG	1 cut(s)	765
SinI	GGWCC	2 cut(s)	349, 976
SmiMI	CAYNNNNRTG	3 cut(s)	426, 594, 963
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
SpeI	ACTAGT	1 cut(s)	563
SphI	GCATGC	1 cut(s)	599
Sse9I	AATT	7 cut(s)	259, 495, 522, 532, 849, 1037, 1186
SsiI	CCGC	1 cut(s)	328
SspMI	CTAG	5 cut(s)	441, 564, 642, 999, 1032
SstI	GAGCTC	1 cut(s)	880
StyD4I	CCNGG	3 cut(s)	254, 291, 1083
TaaI	ACNGT	2 cut(s)	101, 390
TaqI	TCGA	5 cut(s)	18, 64, 137, 517, 802
TasI	AATT	7 cut(s)	259, 495, 522, 532, 849, 1037, 1186
TatI	WGTACW	1 cut(s)	80
TfiI	GAWTC	2 cut(s)	157, 458
Tru1I	TTAA	3 cut(s)	150, 434, 884
Tru9I	TTAA	3 cut(s)	150, 434, 884
TscAI	CASTG	4 cut(s)	277, 517, 615, 831
TseFI	GTSAC	1 cut(s)	1136
TseI	GCWGC	2 cut(s)	198, 780
Tsp45I	GTSAC	1 cut(s)	1136
TspDTI	ATGAA	3 cut(s)	410, 918, 1058
TspRI	CASTG	4 cut(s)	277, 517, 615, 831
Tth111I	GACNNNGTC	1 cut(s)	414
VneI	GTGCAC	1 cut(s)	384
VpaK11BI	GGWCC	2 cut(s)	349, 976
XapI	RAATTY	1 cut(s)	259
XceI	RCATGY	2 cut(s)	487, 599
XspI	CTAG	5 cut(s)	441, 564, 642, 999, 1032
ZrmI	AGTACT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.