Rmu_sc0007209.1_g000013

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007209.1
Physical Location & Seq
Forward (+)
66981 .. 68627
1647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007209.1_g000013.1.cds

Sequence Viewer

Length: 1647 bp
atgagtgaattgaaagagatacatgggatgatgatcactacctcagttgataagaatgtaatcccattgagtaggcttattgatttctgtgctaattctgaagctggagacatcagctatgccaagtcggtttttcgccgaattgagcaacctagtgtctatatctggaactcaatgatcagagggtgctcgaatagcgagaacccagttgagtctttgataatgtatagagaaatggtgcataggggctatgcccctgaccattttacatttccatttgtgctcaaagggtgttcgataatcgttgatgttgaagttggaaaatgtgttcataactgcattgtgaaaactgggtttgagttgaatgtgtatgcctcttccggtttactcaatatgtatgcttgttgtgcagatatggaatctgcacagaaggtgtttgataaaatgcccaagtggaatgtagttgcttggactagtctgatttccgggtttgttgggaacaatcaagctagtgaggctataaagctgtttaaggatatggaactttgtaatgtcgagcctaatgagattacgatggtcagcgtcttagttgcttgtgctcgaagtagggatatcaatactgggaagtgggttcacagtcgtattcgccaacttgggtttgatccctttggatcgagttttggttttaatgtgattcttgcgactgccattgtagatatgtatgcaaaatgtggcagcttgagaacagcaaggcatctgtttgacaagatgcctgacagaaacttggttgcctggaattccatgatcagtgcctacaatcaatatggccagggtgataaagcgattgatctcttttttgatatgcggattgctgggtttgttccggaccaagctaccattctgggtgtgattggttcttgtgcgcagttgggggctttggcattgggacaaagtcttcattcgtatgtatcaaaaactagcataggcacagatgcttctattggaactgctttagtgaacatgtatacgaaaaatggagatgcaggcagtgcgcaaagcatttttgacaatatgcagaagaaagatgtaatggcgtggactagtatgattgttggtttagctatgcatgggcatgccgtggaagcactgcatacttttagaagaatgcaagaggatgctagtgttattccagaccagataacttatattggggttttatgcgcgtgtagccatgttgggcttgtggaggagggtcagagacactttggctcaatggttgatgtttatggcataaaaccaactgcagagcattacggctgcatggttgatcttctgagtcgagcaggccggtttgaagaggcggtgaaactactggaagaaatgccgattcaacccaatgttgctatatggggagctctcttaaatgggtgtgagatatatgaaaatgtagatctagctgaccaagttagaagatacataacagagttggagcctcatattagtggagttttcgtccttctttccaatatatatgctagggccggcagatggcaagaagtaaagctgactagagaattgatgaaagataggaggattgccaaaagtcttggatgtagttcagttgaaatgaaattgttaagttcataa

Protein Analysis

548

Amino Acids

60.72

Weight (kDa)

6.08

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014550)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 924, 1053
AccI GTMKAC 1 cut(s) 1025
AccII CGCG 1 cut(s) 1223
AccIII TCCGGA 1 cut(s) 883
AciI CCGC 2 cut(s) 865, 1361
AclWI GGATC 2 cut(s) 656, 679
AcoI YGGCCR 1 cut(s) 826
AcsI RAATTY 1 cut(s) 796
AcuI CTGAAG 1 cut(s) 120
AfiI CCNNNNNNNGG 1 cut(s) 1548
AflIII ACRYGT 1 cut(s) 1020
AgsI TTSAA 6 cut(s) 13, 314, 364, 1355, 1391, 1625
AhlI ACTAGT 2 cut(s) 473, 1100
AjnI CCWGG 2 cut(s) 791, 828
AjuI GAANNNNNNNTTGG 2 cut(s) 882, 914
AloI GAACNNNNNNTCC 2 cut(s) 312, 344
Alw21I GWGCWC 4 cut(s) 191, 285, 601, 1417
Alw26I GTCTC 2 cut(s) 102, 1252
AlwI GGATC 2 cut(s) 656, 679
Aor13HI TCCGGA 1 cut(s) 883
AoxI GGCC 3 cut(s) 826, 1345, 1539
ApeKI GCWGC 2 cut(s) 735, 1317
ApoI RAATTY 1 cut(s) 796
AspLEI GCGC 3 cut(s) 925, 1054, 1223
AspS9I GGNCC 2 cut(s) 886, 1539
AsuC2I CCSGG 1 cut(s) 487
AsuHPI GGTGA 2 cut(s) 845, 1375
AvaII GGWCC 1 cut(s) 886
BalI TGGCCA 1 cut(s) 828
BanII GRGCYC 1 cut(s) 1417
BbsI GAAGAC 1 cut(s) 947
Bbv12I GWGCWC 4 cut(s) 191, 285, 601, 1417
BbvI GCAGC 2 cut(s) 747, 1304
BccI CCATC 2 cut(s) 568, 1542
BceAI ACGGC 2 cut(s) 1121, 1330
BciT130I CCWGG 2 cut(s) 793, 830
BclI TGATCA 3 cut(s) 33, 177, 804
BcnI CCSGG 1 cut(s) 487
BcoDI GTCTC 2 cut(s) 102, 1252
BcuI ACTAGT 2 cut(s) 473, 1100
BfaI CTAG 9 cut(s) 153, 474, 510, 978, 1101, 1179, 1454, 1536, 1569
BfmI CTRYAG 1 cut(s) 1302
BglII AGATCT 1 cut(s) 1450
BisI GCNGC 2 cut(s) 736, 1318
BlsI GCNGC 2 cut(s) 737, 1319
Bme1390I CCNGG 3 cut(s) 487, 793, 830
Bme18I GGWCC 1 cut(s) 886
BmgT120I GGNCC 2 cut(s) 886, 1539
BmiI GGNNCC 1 cut(s) 1491
BmrFI CCNGG 3 cut(s) 487, 793, 830
BmrI ACTGGG 3 cut(s) 200, 360, 630
BmsI GCATC 5 cut(s) 759, 763, 982, 1030, 1165
BmuI ACTGGG 3 cut(s) 200, 360, 630
BpiI GAAGAC 1 cut(s) 947
BpmI CTGGAG 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 760
BpuMI CCSGG 1 cut(s) 487
BsaBI GATNNNNATC 1 cut(s) 32
BsaJI CCNNGG 2 cut(s) 829, 1137
BsaWI WCCGGW 2 cut(s) 380, 883
BsaXI ACNNNNNCTCC 2 cut(s) 1497, 1527
Bsc4I CCNNNNNNNGG 1 cut(s) 1548
Bse118I RCCGGY 2 cut(s) 1347, 1541
Bse1I ACTGG 4 cut(s) 206, 355, 625, 1377
Bse8I GATNNNNATC 1 cut(s) 32
BseAI TCCGGA 1 cut(s) 883
BseBI CCWGG 2 cut(s) 793, 830
BseDI CCNNGG 2 cut(s) 829, 1137
BseGI GGATG 3 cut(s) 33, 1180, 1616
BseJI GATNNNNATC 1 cut(s) 32
BseLI CCNNNNNNNGG 1 cut(s) 1548
BseMII CTCAG 2 cut(s) 57, 1325
BseNI ACTGG 4 cut(s) 206, 355, 625, 1377
BseRI GAGGAG 1 cut(s) 1262
BseXI GCAGC 2 cut(s) 747, 1304
BseYI CCCAGC 1 cut(s) 872
BsgI GTGCAG 2 cut(s) 408, 429
Bsh1236I CGCG 1 cut(s) 1223
BshFI GGCC 3 cut(s) 828, 1347, 1541
BsiHKAI GWGCWC 4 cut(s) 191, 285, 601, 1417
BsiSI CCGG 5 cut(s) 381, 486, 884, 1348, 1542
BslFI GGGAC 1 cut(s) 960
BslI CCNNNNNNNGG 1 cut(s) 1548
BsmAI GTCTC 2 cut(s) 102, 1252
BsmFI GGGAC 1 cut(s) 960
BsmI GAATGC 1 cut(s) 1170
BsnI GGCC 3 cut(s) 828, 1347, 1541
Bsp1286I GDGCHC 4 cut(s) 191, 285, 601, 1417
Bsp13I TCCGGA 1 cut(s) 883
Bsp143I GATC 8 cut(s) 33, 177, 661, 671, 804, 847, 1327, 1450
BspACI CCGC 2 cut(s) 865, 1361
BspANI GGCC 3 cut(s) 828, 1347, 1541
BspCNI CTCAG 2 cut(s) 56, 1326
BspEI TCCGGA 1 cut(s) 883
BspFNI CGCG 1 cut(s) 1223
BspLI GGNNCC 1 cut(s) 1491
BspMAI CTGCAG 1 cut(s) 1306
BspPI GGATC 2 cut(s) 656, 679
BsrFI RCCGGY 2 cut(s) 1347, 1541
BsrI ACTGG 4 cut(s) 206, 355, 625, 1377
BssAI RCCGGY 2 cut(s) 1347, 1541
BssECI CCNNGG 2 cut(s) 829, 1137
BssMI GATC 8 cut(s) 33, 177, 661, 671, 804, 847, 1327, 1450
BssNAI GTATAC 1 cut(s) 1026
Bst1107I GTATAC 1 cut(s) 1026
Bst2UI CCWGG 2 cut(s) 793, 830
Bst4CI ACNGT 1 cut(s) 638
Bst6I CTCTTC 2 cut(s) 382, 1350
BstAPI GCANNNNNTGC 1 cut(s) 1049
BstC8I GCNNGC 4 cut(s) 1045, 1134, 1345, 1543
BstDEI CTNAG 3 cut(s) 43, 586, 1334
BstDSI CCRYGG 1 cut(s) 1137
BstF5I GGATG 3 cut(s) 33, 1180, 1616
BstFNI CGCG 1 cut(s) 1223
BstHHI GCGC 3 cut(s) 925, 1054, 1223
BstKTI GATC 8 cut(s) 36, 180, 664, 674, 807, 850, 1330, 1453
BstMAI GTCTC 2 cut(s) 102, 1252
BstMBI GATC 8 cut(s) 33, 177, 661, 671, 804, 847, 1327, 1450
BstMWI GCNNNNNNNGC 6 cut(s) 195, 407, 515, 1049, 1142, 1227
BstNI CCWGG 2 cut(s) 793, 830
BstNSI RCATGY 2 cut(s) 1024, 1136
BstSCI CCNGG 3 cut(s) 485, 791, 828
BstSFI CTRYAG 1 cut(s) 1302
BstUI CGCG 1 cut(s) 1223
BstV1I GCAGC 2 cut(s) 747, 1304
BstV2I GAAGAC 1 cut(s) 947
BstX2I RGATCY 1 cut(s) 1450
BstYI RGATCY 1 cut(s) 1450
BstZ17I GTATAC 1 cut(s) 1026
BsuRI GGCC 3 cut(s) 828, 1347, 1541
BtgI CCRYGG 1 cut(s) 1137
BtsCI GGATG 3 cut(s) 33, 1180, 1616
BtsI GCAGTG 2 cut(s) 1054, 1145
BtsIMutI CAGTG 3 cut(s) 814, 1054, 1145
Cac8I GCNNGC 4 cut(s) 1045, 1134, 1345, 1543
CfoI GCGC 3 cut(s) 925, 1054, 1223
Cfr10I RCCGGY 2 cut(s) 1347, 1541
Cfr13I GGNCC 2 cut(s) 886, 1539
CseI GACGC 1 cut(s) 571
CviAII CATG 7 cut(s) 23, 802, 1021, 1127, 1133, 1232, 1321
DdeI CTNAG 3 cut(s) 43, 586, 1334
DpnI GATC 8 cut(s) 35, 179, 663, 673, 806, 849, 1329, 1452
DpnII GATC 8 cut(s) 33, 177, 661, 671, 804, 847, 1327, 1450
EaeI YGGCCR 1 cut(s) 826
Eam1104I CTCTTC 2 cut(s) 382, 1350
EarI CTCTTC 2 cut(s) 382, 1350
Ecl136II GAGCTC 1 cut(s) 1415
Eco24I GRGCYC 1 cut(s) 1417
Eco32I GATATC 1 cut(s) 613
Eco47I GGWCC 1 cut(s) 886
Eco53kI GAGCTC 1 cut(s) 1415
Eco57I CTGAAG 1 cut(s) 120
EcoICRI GAGCTC 1 cut(s) 1415
EcoRI GAATTC 1 cut(s) 796
EcoRII CCWGG 2 cut(s) 791, 828
EcoRV GATATC 1 cut(s) 613
EcoT22I ATGCAT 1 cut(s) 1128
EcoT38I GRGCYC 1 cut(s) 1417
FaeI CATG 7 cut(s) 26, 805, 1024, 1130, 1136, 1235, 1324
FaqI GGGAC 1 cut(s) 960
FatI CATG 7 cut(s) 22, 801, 1020, 1126, 1132, 1231, 1320
FbaI TGATCA 3 cut(s) 33, 177, 804
FblI GTMKAC 1 cut(s) 1025
Fnu4HI GCNGC 2 cut(s) 736, 1318
FokI GGATG 3 cut(s) 40, 1187, 1623
FriOI GRGCYC 1 cut(s) 1417
Fsp4HI GCNGC 2 cut(s) 736, 1318
FspBI CTAG 9 cut(s) 153, 474, 510, 978, 1101, 1179, 1454, 1536, 1569
FspI TGCGCA 2 cut(s) 924, 1053
GlaI GCGC 3 cut(s) 924, 1053, 1222
GluI GCNGC 2 cut(s) 736, 1318
GsaI CCCAGC 1 cut(s) 876
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 3 cut(s) 828, 1347, 1541
HapII CCGG 5 cut(s) 381, 486, 884, 1348, 1542
HgaI GACGC 1 cut(s) 571
HhaI GCGC 3 cut(s) 925, 1054, 1223
Hin1II CATG 7 cut(s) 26, 805, 1024, 1130, 1136, 1235, 1324
Hin6I GCGC 3 cut(s) 923, 1052, 1221
HinP1I GCGC 3 cut(s) 923, 1052, 1221
HinfI GANTC 5 cut(s) 212, 419, 694, 1336, 1387
HpaII CCGG 5 cut(s) 381, 486, 884, 1348, 1542
HphI GGTGA 2 cut(s) 845, 1375
Hpy166II GTNNAC 5 cut(s) 386, 634, 1018, 1026, 1098
Hpy188I TCNGA 5 cut(s) 100, 182, 480, 1257, 1335
Hpy188III TCNNGA 3 cut(s) 166, 884, 1190
Hpy8I GTNNAC 5 cut(s) 386, 634, 1018, 1026, 1098
HpyAV CCTTC 2 cut(s) 424, 1526
HpyCH4III ACNGT 1 cut(s) 638
HpyF10VI GCNNNNNNNGC 6 cut(s) 195, 407, 515, 1049, 1142, 1227
HpyF3I CTNAG 3 cut(s) 43, 586, 1334
Hsp92II CATG 7 cut(s) 26, 805, 1024, 1130, 1136, 1235, 1324
HspAI GCGC 3 cut(s) 923, 1052, 1221
Kpn2I TCCGGA 1 cut(s) 883
KroI GCCGGC 1 cut(s) 1541
KroNI GCCGGC 1 cut(s) 1543
Ksp22I TGATCA 3 cut(s) 33, 177, 804
Kzo9I GATC 8 cut(s) 33, 177, 661, 671, 804, 847, 1327, 1450
LmnI GCTCC 2 cut(s) 1412, 1489
Lsp1109I GCAGC 2 cut(s) 747, 1304
LweI GCATC 5 cut(s) 759, 763, 982, 1030, 1165
MaeI CTAG 9 cut(s) 153, 474, 510, 978, 1101, 1179, 1454, 1536, 1569
MalI GATC 8 cut(s) 35, 179, 663, 673, 806, 849, 1329, 1452
MboI GATC 8 cut(s) 33, 177, 661, 671, 804, 847, 1327, 1450
MboII GAAGA 8 cut(s) 369, 947, 1090, 1173, 1322, 1367, 1388, 1482
MflI RGATCY 1 cut(s) 1450
MhlI GDGCHC 4 cut(s) 191, 285, 601, 1417
MlsI TGGCCA 1 cut(s) 828
MluCI AATT 6 cut(s) 8, 94, 141, 796, 1574, 1631
MluNI TGGCCA 1 cut(s) 828
MlyI GAGTC 2 cut(s) 221, 1345
MmeI TCCRAC 2 cut(s) 298, 1467
Mox20I TGGCCA 1 cut(s) 828
Mph1103I ATGCAT 1 cut(s) 1128
MroI TCCGGA 1 cut(s) 883
MroNI GCCGGC 1 cut(s) 1541
MscI TGGCCA 1 cut(s) 828
MseI TTAA 4 cut(s) 531, 687, 1421, 1637
MslI CAYNNNNRTG 3 cut(s) 963, 1131, 1500
Msp20I TGGCCA 1 cut(s) 828
MspI CCGG 5 cut(s) 381, 486, 884, 1348, 1542
MspR9I CCNGG 3 cut(s) 487, 793, 830
Mva1269I GAATGC 1 cut(s) 1170
MvaI CCWGG 2 cut(s) 793, 830
MvnI CGCG 1 cut(s) 1223
MwoI GCNNNNNNNGC 6 cut(s) 195, 407, 515, 1049, 1142, 1227
NaeI GCCGGC 1 cut(s) 1543
NciI CCSGG 1 cut(s) 487
NdeII GATC 8 cut(s) 33, 177, 661, 671, 804, 847, 1327, 1450
NgoMIV GCCGGC 1 cut(s) 1541
NlaIII CATG 7 cut(s) 26, 805, 1024, 1130, 1136, 1235, 1324
NlaIV GGNNCC 1 cut(s) 1491
NsbI TGCGCA 2 cut(s) 924, 1053
NsiI ATGCAT 1 cut(s) 1128
NspI RCATGY 2 cut(s) 1024, 1136
PaeI GCATGC 1 cut(s) 1136
PciI ACATGT 1 cut(s) 1020
PctI GAATGC 1 cut(s) 1170
PdiI GCCGGC 1 cut(s) 1543
PfeI GAWTC 3 cut(s) 419, 694, 1387
PflFI GACNNNGTC 1 cut(s) 951
PkrI GCNGC 2 cut(s) 737, 1319
PleI GAGTC 2 cut(s) 220, 1344
PpsI GAGTC 2 cut(s) 220, 1344
PscI ACATGT 1 cut(s) 1020
Psp124BI GAGCTC 1 cut(s) 1417
Psp6I CCWGG 2 cut(s) 791, 828
PspFI CCCAGC 1 cut(s) 872
PspGI CCWGG 2 cut(s) 791, 828
PspN4I GGNNCC 1 cut(s) 1491
PspPI GGNCC 2 cut(s) 886, 1539
PstI CTGCAG 1 cut(s) 1306
PsuI RGATCY 1 cut(s) 1450
PsyI GACNNNGTC 1 cut(s) 951
RseI CAYNNNNRTG 3 cut(s) 963, 1131, 1500
SacI GAGCTC 1 cut(s) 1417
SaqAI TTAA 4 cut(s) 531, 687, 1421, 1637
SatI GCNGC 2 cut(s) 736, 1318
Sau3AI GATC 8 cut(s) 33, 177, 661, 671, 804, 847, 1327, 1450
Sau96I GGNCC 2 cut(s) 886, 1539
SchI GAGTC 2 cut(s) 221, 1345
ScrFI CCNGG 3 cut(s) 487, 793, 830
SduI GDGCHC 4 cut(s) 191, 285, 601, 1417
SfaNI GCATC 5 cut(s) 759, 763, 982, 1030, 1165
SfcI CTRYAG 1 cut(s) 1302
SinI GGWCC 1 cut(s) 886
SmiMI CAYNNNNRTG 3 cut(s) 963, 1131, 1500
SmlI CTYRAG 1 cut(s) 739
SmoI CTYRAG 1 cut(s) 739
SpeI ACTAGT 2 cut(s) 473, 1100
SphI GCATGC 1 cut(s) 1136
Sse9I AATT 6 cut(s) 8, 94, 141, 796, 1574, 1631
SsiI CCGC 2 cut(s) 865, 1361
SspMI CTAG 9 cut(s) 153, 474, 510, 978, 1101, 1179, 1454, 1536, 1569
SstI GAGCTC 1 cut(s) 1417
StyD4I CCNGG 3 cut(s) 485, 791, 828
TaaI ACNGT 1 cut(s) 638
TaqI TCGA 6 cut(s) 191, 296, 555, 601, 674, 1339
TasI AATT 6 cut(s) 8, 94, 141, 796, 1574, 1631
TfiI GAWTC 3 cut(s) 419, 694, 1387
Tru1I TTAA 4 cut(s) 531, 687, 1421, 1637
Tru9I TTAA 4 cut(s) 531, 687, 1421, 1637
TscAI CASTG 3 cut(s) 814, 1054, 1152
TseI GCWGC 2 cut(s) 735, 1317
TspDTI ATGAA 6 cut(s) 320, 947, 1455, 1595, 1632, 1643
TspRI CASTG 3 cut(s) 814, 1054, 1152
Tth111I GACNNNGTC 1 cut(s) 951
VpaK11BI GGWCC 1 cut(s) 886
XapI RAATTY 1 cut(s) 796
XceI RCATGY 2 cut(s) 1024, 1136
XmiI GTMKAC 1 cut(s) 1025
XspI CTAG 9 cut(s) 153, 474, 510, 978, 1101, 1179, 1454, 1536, 1569
Zsp2I ATGCAT 1 cut(s) 1128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.