Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0014550

Physical Location & Seq

Genomic Coordinates Reverse (-)

4092913 .. 4094678

Gene Structure 1766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG060200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGAACTTTGTAATGTCGAGCCTAATGAGATTACGATGGTCAACGTCTTGGTTGCTTGTGCTCGAAGTAGGGATATCAATACTGGGAAGTGGGTTCACAGTCGTATTCGCCAACTTGGGTTTGATCCCTTTGGATCGAGTTTTGGTTTTAATGTGATTCTTGCGACTGCCATTGTAGATATGTATGCAAAATGTGGCAGCTTGAGAACAGCAAGGCATCTGTTTGACAAGATGGCTGACAGAAACTTGGTTGCCTGGAATTCCATGATCAGTGCCTACAATCAATATGGCCAGGGTGATAAAGCGATTGATCTCTTTTTTGATATGCGGATTGCTGGGTTTGTTCCGGACCAAGCTACCATTCTGGGTGTGATTGGTTCTTGTGCGCAGTTGGGGGCTTTGGCATTGGGACAAAGTCTTCATTCACTAGGAGTATACCAACACAATGTTGAGGTCTCCAGCTCCAGAATTTGCAAAAATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

161

Amino Acids

17.69

Weight (kDa)

7.67

Isoelectric Point (pI)

39.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	82 - 129	5.5e-09	PPR repeat family
PPR	PF01535	84 - 113	2.4e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05240
fragaria_vesca	FvH4_6g05570
malus_domestica	MD12G1221500.v1.1
prunus_persica	Prupe.6G328300_v2.0.a1
pyrus_communis	pycom12g20770
rosa_chinensis	RchiOBHm_Chr3g0454351
rosa_laevigata	RLG00000025451 RLG00000025452 RLG00000025458
rosa_multiflora	Rmu_sc0000006.1_g000021 Rmu_sc0007209.1_g000013
rosa_roxburghii	Rroxscaffold_165G00437180 Rroxscaffold_6G00425180
rosa_rugosa	Rorug02G0654500
rosa_samantha	Rh3BG060200 Rh3DG060600
rosa_wichuraiana	Rw3G004500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	387
AccI	GTMKAC	1 cut(s)	435
AccIII	TCCGGA	1 cut(s)	346
AciI	CCGC	1 cut(s)	328
AclWI	GGATC	2 cut(s)	119, 142
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	2 cut(s)	259, 468
AjnI	CCWGG	2 cut(s)	254, 291
AjuI	GAANNNNNNNTTGG	2 cut(s)	345, 377
AluBI	AGCT	3 cut(s)	201, 356, 462
AluI	AGCT	3 cut(s)	201, 356, 462
Alw21I	GWGCWC	1 cut(s)	64
Alw26I	GTCTC	1 cut(s)	460
AlwI	GGATC	2 cut(s)	119, 142
Aor13HI	TCCGGA	1 cut(s)	346
AoxI	GGCC	1 cut(s)	289
ApeKI	GCWGC	1 cut(s)	198
ApoI	RAATTY	2 cut(s)	259, 468
AspLEI	GCGC	1 cut(s)	388
AspS9I	GGNCC	1 cut(s)	349
AsuHPI	GGTGA	1 cut(s)	308
AvaII	GGWCC	1 cut(s)	349
BalI	TGGCCA	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	210
BccI	CCATC	2 cut(s)	31, 226
BciT130I	CCWGG	2 cut(s)	256, 293
BclI	TGATCA	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	460
BfaI	CTAG	1 cut(s)	428
BisI	GCNGC	1 cut(s)	199
BlsI	GCNGC	1 cut(s)	200
Bme1390I	CCNGG	2 cut(s)	256, 293
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	349
BmrFI	CCNGG	2 cut(s)	256, 293
BmrI	ACTGGG	1 cut(s)	93
BmsI	GCATC	1 cut(s)	226
BmuI	ACTGGG	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	410
BpmI	CTGGAG	2 cut(s)	442, 448
BpuEI	CTTGAG	1 cut(s)	223
BsaI	GGTCTC	1 cut(s)	460
BsaJI	CCNNGG	1 cut(s)	292
BsaWI	WCCGGW	1 cut(s)	346
Bse1I	ACTGG	1 cut(s)	88
BseAI	TCCGGA	1 cut(s)	346
BseBI	CCWGG	2 cut(s)	256, 293
BseDI	CCNNGG	1 cut(s)	292
BseNI	ACTGG	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	210
BseYI	CCCAGC	1 cut(s)	335
BshFI	GGCC	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	64
BsiSI	CCGG	1 cut(s)	347
BslFI	GGGAC	1 cut(s)	423
BsmAI	GTCTC	1 cut(s)	460
BsmFI	GGGAC	1 cut(s)	423
BsnI	GGCC	1 cut(s)	291
Bso31I	GGTCTC	1 cut(s)	460
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp13I	TCCGGA	1 cut(s)	346
Bsp143I	GATC	4 cut(s)	124, 134, 267, 310
BspACI	CCGC	1 cut(s)	328
BspANI	GGCC	1 cut(s)	291
BspEI	TCCGGA	1 cut(s)	346
BspPI	GGATC	2 cut(s)	119, 142
BspTNI	GGTCTC	1 cut(s)	460
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	4 cut(s)	124, 134, 267, 310
BssNAI	GTATAC	1 cut(s)	436
Bst1107I	GTATAC	1 cut(s)	436
Bst2UI	CCWGG	2 cut(s)	256, 293
Bst4CI	ACNGT	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	4 cut(s)	127, 137, 270, 313
BstMAI	GTCTC	1 cut(s)	460
BstMBI	GATC	4 cut(s)	124, 134, 267, 310
BstNI	CCWGG	2 cut(s)	256, 293
BstSCI	CCNGG	2 cut(s)	254, 291
BstV1I	GCAGC	1 cut(s)	210
BstV2I	GAAGAC	1 cut(s)	410
BstZ17I	GTATAC	1 cut(s)	436
BsuRI	GGCC	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	277
CfoI	GCGC	1 cut(s)	388
Cfr13I	GGNCC	1 cut(s)	349
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	7 cut(s)	22, 201, 236, 291, 356, 398, 462
CviKI_1	RGCY	7 cut(s)	22, 201, 236, 291, 356, 398, 462
DpnI	GATC	4 cut(s)	126, 136, 269, 312
DpnII	GATC	4 cut(s)	124, 134, 267, 310
EaeI	YGGCCR	1 cut(s)	289
Eco31I	GGTCTC	1 cut(s)	460
Eco32I	GATATC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	349
EcoRI	GAATTC	1 cut(s)	259
EcoRII	CCWGG	2 cut(s)	254, 291
EcoRV	GATATC	1 cut(s)	76
FaeI	CATG	1 cut(s)	268
FaiI	YATR	6 cut(s)	182, 186, 266, 288, 326, 436
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	1 cut(s)	264
FbaI	TGATCA	1 cut(s)	267
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	1 cut(s)	199
Fsp4HI	GCNGC	1 cut(s)	199
FspBI	CTAG	1 cut(s)	428
FspI	TGCGCA	1 cut(s)	387
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	1 cut(s)	199
GsaI	CCCAGC	1 cut(s)	339
GsuI	CTGGAG	2 cut(s)	442, 448
HaeIII	GGCC	1 cut(s)	291
HapII	CCGG	1 cut(s)	347
HhaI	GCGC	1 cut(s)	388
Hin1II	CATG	1 cut(s)	268
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	1 cut(s)	157
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	3 cut(s)	43, 97, 436
Hpy188III	TCNNGA	2 cut(s)	347, 465
Hpy8I	GTNNAC	3 cut(s)	43, 97, 436
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	2 cut(s)	188, 474
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	268
HspAI	GCGC	1 cut(s)	386
Kpn2I	TCCGGA	1 cut(s)	346
Ksp22I	TGATCA	1 cut(s)	267
Kzo9I	GATC	4 cut(s)	124, 134, 267, 310
LmnI	GCTCC	1 cut(s)	467
Lsp1109I	GCAGC	1 cut(s)	210
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	1 cut(s)	45
MalI	GATC	4 cut(s)	126, 136, 269, 312
MboI	GATC	4 cut(s)	124, 134, 267, 310
MboII	GAAGA	1 cut(s)	410
MhlI	GDGCHC	1 cut(s)	64
MlsI	TGGCCA	1 cut(s)	291
MluCI	AATT	2 cut(s)	259, 468
MluNI	TGGCCA	1 cut(s)	291
MnlI	CCTC	1 cut(s)	445
Mox20I	TGGCCA	1 cut(s)	291
MroI	TCCGGA	1 cut(s)	346
MscI	TGGCCA	1 cut(s)	291
MseI	TTAA	1 cut(s)	150
Msp20I	TGGCCA	1 cut(s)	291
MspI	CCGG	1 cut(s)	347
MspR9I	CCNGG	2 cut(s)	256, 293
MvaI	CCWGG	2 cut(s)	256, 293
NdeII	GATC	4 cut(s)	124, 134, 267, 310
NlaIII	CATG	1 cut(s)	268
NsbI	TGCGCA	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	157
PflFI	GACNNNGTC	1 cut(s)	414
PkrI	GCNGC	1 cut(s)	200
Psp6I	CCWGG	2 cut(s)	254, 291
PspFI	CCCAGC	1 cut(s)	335
PspGI	CCWGG	2 cut(s)	254, 291
PspPI	GGNCC	1 cut(s)	349
PsyI	GACNNNGTC	1 cut(s)	414
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	1 cut(s)	199
Sau3AI	GATC	4 cut(s)	124, 134, 267, 310
Sau96I	GGNCC	1 cut(s)	349
ScrFI	CCNGG	2 cut(s)	256, 293
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	5 cut(s)	48, 203, 358, 456, 464
SfaNI	GCATC	1 cut(s)	226
SinI	GGWCC	1 cut(s)	349
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
Sse9I	AATT	2 cut(s)	259, 468
SsiI	CCGC	1 cut(s)	328
SspMI	CTAG	1 cut(s)	428
StyD4I	CCNGG	2 cut(s)	254, 291
TaaI	ACNGT	1 cut(s)	101
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	3 cut(s)	18, 64, 137
TasI	AATT	2 cut(s)	259, 468
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	1 cut(s)	277
TseI	GCWGC	1 cut(s)	198
TspDTI	ATGAA	1 cut(s)	410
TspRI	CASTG	1 cut(s)	277
Tth111I	GACNNNGTC	1 cut(s)	414
VpaK11BI	GGWCC	1 cut(s)	349
XapI	RAATTY	2 cut(s)	259, 468
XmiI	GTMKAC	1 cut(s)	435
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.