Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0014550

Physical Location & Seq

Genomic Coordinates Forward (+)

46159241 .. 46161102

Gene Structure 1862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00425180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGAAGAAACACTACAACACCATTCTCTCCCTACTAGAAAAATGTAAAACCATGAGTGAATTGAAAGAGATACATGGGATGATGATCACTACCTCAGTTGATAAGAATGTAATCCCATTGAGTAGGCTTATTGATTTCTGTGCTAATTCTGAAGCTGGAGACATCAGCTATGCCAAGTCGGTTTTTCGCCAAATTGAGCAGCCTAGTGTCTATATCTGGAACTCAATGATCAGAGGGTGTTCGAATAGCGAGAACCCAGTTGAGTCTTTGATAATGTATAGAGAAATGGTGCATAGGGGTTATGCCCCTGACCATTTTACATTTCCATTTGTGCTCAAAGGGTGTTCGATAATCAGTGATGTTCATTATGGGAAATGTGTTCATAGCTGCATTGCGAAAACTGGGTTTGACTTGAATGTGTATGCCTCTTCTGGTTTACTCAATATGTATGCTTGTTGTGCAGATATGGAATCTGCACAGAAGGTGTTTGATAAAATGCCTAAGTGGAATGTAGTTGCTTGGACTAGTCTGATTTCCGGGTTTGTTGGGAACAATCAAGCTAGTGAGGCTATAAAGGTGTTTATGGACATGGAACTTTGTAATGTCGAGCCTAATGAGATTACGATGGTCAATGTATTAGTCGCTTGTGCTCGAAGTAGGGATATCAATACTGGGAAGTGGGTTCACAGTCGTATTCGCCAACTTGGGTTTGATCCGTTTGGATCGAGTTTTGATTTTAATGTGATTCTTGCAACTGCCATTGTAGATATGTATGCAAAATGTGGCAGCTTGAGAACAGCAAGGCATCTGTTCGACAAGATGCCTGACAGGAACTTGGTTGCCTGGAATTCCATGATCAGTGCCTACAATCAATATGGCCAGGGTGATAAAGCGATTGATCTCTTTTTTGATATGCGGATTGCTGGGTTTGTTCCGGACCAAGCTACCATTCTGGGTGTGATTGGTTCTTGTGCGCAGTTGGGGGCTTTGGCATTGGGACAAAGTCTTCATTCGGCTGGAAGATGGCAAGAAGTAAAGCTGACTAGAGAATTGATGAAAGATAGGAGGATTGCCAAAAGTCTTGGATGTAGTTCAGGTGTAAAGCTTGCAATCAACCTGAAGTTCAAGAATGTCATTCTGGAGAGTGACTGCAAAGAACTTGTTGATGCCCTCAACAACAATATCGAGAGAGGCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

399

Amino Acids

44.54

Weight (kDa)

8.13

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	68 - 115	3.9e-09	PPR repeat family
PPR_2	PF13041	170 - 217	6.9e-10	PPR repeat family
PPR_2	PF13041	278 - 325	2.4e-08	PPR repeat family
PPR	PF01535	280 - 309	9e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05240
fragaria_vesca	FvH4_6g05570
malus_domestica	MD12G1221500.v1.1
prunus_persica	Prupe.6G328300_v2.0.a1
pyrus_communis	pycom12g20770
rosa_chinensis	RchiOBHm_Chr3g0454351
rosa_laevigata	RLG00000025451 RLG00000025452 RLG00000025458
rosa_multiflora	Rmu_sc0000006.1_g000021 Rmu_sc0007209.1_g000013
rosa_roxburghii	Rroxscaffold_165G00437180 Rroxscaffold_6G00425180
rosa_rugosa	Rorug02G0654500
rosa_samantha	Rh3BG060200 Rh3DG060600
rosa_wichuraiana	Rw3G004500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	975
AccIII	TCCGGA	1 cut(s)	934
AciI	CCGC	1 cut(s)	916
AclWI	GGATC	2 cut(s)	707, 730
AcoI	YGGCCR	1 cut(s)	877
AcsI	RAATTY	1 cut(s)	847
AcuI	CTGAAG	2 cut(s)	171, 1139
AgsI	TTSAA	3 cut(s)	64, 415, 1126
AhlI	ACTAGT	1 cut(s)	524
AjnI	CCWGG	2 cut(s)	842, 879
AjuI	GAANNNNNNNTTGG	2 cut(s)	933, 965
AluBI	AGCT	8 cut(s)	155, 168, 387, 560, 789, 944, 1039, 1105
AluI	AGCT	8 cut(s)	155, 168, 387, 560, 789, 944, 1039, 1105
Alw21I	GWGCWC	2 cut(s)	336, 652
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	2 cut(s)	707, 730
Aor13HI	TCCGGA	1 cut(s)	934
AoxI	GGCC	1 cut(s)	877
ApeKI	GCWGC	3 cut(s)	199, 387, 786
ApoI	RAATTY	1 cut(s)	847
AspLEI	GCGC	1 cut(s)	976
AspS9I	GGNCC	1 cut(s)	937
AsuC2I	CCSGG	1 cut(s)	538
AsuHPI	GGTGA	1 cut(s)	896
AsuII	TTCGAA	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	937
BalI	TGGCCA	1 cut(s)	879
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	998
Bbv12I	GWGCWC	2 cut(s)	336, 652
BbvI	GCAGC	3 cut(s)	211, 374, 798
BccI	CCATC	2 cut(s)	619, 1017
BciT130I	CCWGG	2 cut(s)	844, 881
BclI	TGATCA	3 cut(s)	84, 228, 855
BcnI	CCSGG	1 cut(s)	538
BcoDI	GTCTC	1 cut(s)	153
BcuI	ACTAGT	1 cut(s)	524
BfaI	CTAG	5 cut(s)	35, 204, 525, 561, 1044
BisI	GCNGC	3 cut(s)	200, 388, 787
BlsI	GCNGC	3 cut(s)	201, 389, 788
Bme1390I	CCNGG	3 cut(s)	538, 844, 881
Bme18I	GGWCC	1 cut(s)	937
BmgT120I	GGNCC	1 cut(s)	937
BmrFI	CCNGG	3 cut(s)	538, 844, 881
BmrI	ACTGGG	3 cut(s)	251, 411, 681
BmsI	GCATC	3 cut(s)	810, 814, 1156
BmuI	ACTGGG	3 cut(s)	251, 411, 681
BpiI	GAAGAC	1 cut(s)	998
BpmI	CTGGAG	2 cut(s)	177, 1160
Bpu14I	TTCGAA	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	811
BpuMI	CCSGG	1 cut(s)	538
BsaBI	GATNNNNATC	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	880
BsaWI	WCCGGW	1 cut(s)	934
Bse1I	ACTGG	3 cut(s)	257, 406, 676
Bse3DI	GCAATG	1 cut(s)	390
Bse8I	GATNNNNATC	1 cut(s)	83
BseAI	TCCGGA	1 cut(s)	934
BseBI	CCWGG	2 cut(s)	844, 881
BseDI	CCNNGG	1 cut(s)	880
BseGI	GGATG	2 cut(s)	84, 1091
BseJI	GATNNNNATC	1 cut(s)	83
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	3 cut(s)	257, 406, 676
BseXI	GCAGC	3 cut(s)	211, 374, 798
BseYI	CCCAGC	1 cut(s)	923
BsgI	GTGCAG	2 cut(s)	459, 480
BshFI	GGCC	1 cut(s)	879
BsiHKAI	GWGCWC	2 cut(s)	336, 652
BsiSI	CCGG	2 cut(s)	537, 935
BslFI	GGGAC	1 cut(s)	1011
BsmAI	GTCTC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	1011
BsnI	GGCC	1 cut(s)	879
Bsp119I	TTCGAA	1 cut(s)	242
Bsp1286I	GDGCHC	2 cut(s)	336, 652
Bsp13I	TCCGGA	1 cut(s)	934
Bsp143I	GATC	6 cut(s)	84, 228, 712, 722, 855, 898
BspACI	CCGC	1 cut(s)	916
BspANI	GGCC	1 cut(s)	879
BspCNI	CTCAG	1 cut(s)	107
BspEI	TCCGGA	1 cut(s)	934
BspPI	GGATC	2 cut(s)	707, 730
BspT104I	TTCGAA	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	390
BsrI	ACTGG	3 cut(s)	257, 406, 676
BssECI	CCNNGG	1 cut(s)	880
BssMI	GATC	6 cut(s)	84, 228, 712, 722, 855, 898
Bst2UI	CCWGG	2 cut(s)	844, 881
Bst4CI	ACNGT	1 cut(s)	689
Bst6I	CTCTTC	1 cut(s)	433
BstBI	TTCGAA	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	1107
BstDEI	CTNAG	2 cut(s)	94, 501
BstF5I	GGATG	2 cut(s)	84, 1091
BstHHI	GCGC	1 cut(s)	976
BstKTI	GATC	6 cut(s)	87, 231, 715, 725, 858, 901
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	6 cut(s)	84, 228, 712, 722, 855, 898
BstMWI	GCNNNNNNNGC	2 cut(s)	458, 566
BstNI	CCWGG	2 cut(s)	844, 881
BstSCI	CCNGG	3 cut(s)	536, 842, 879
BstV1I	GCAGC	3 cut(s)	211, 374, 798
BstV2I	GAAGAC	1 cut(s)	998
BsuRI	GGCC	1 cut(s)	879
BtsCI	GGATG	2 cut(s)	84, 1091
BtsIMutI	CAGTG	2 cut(s)	361, 865
Cac8I	GCNNGC	1 cut(s)	1107
CfoI	GCGC	1 cut(s)	976
Cfr13I	GGNCC	1 cut(s)	937
CviAII	CATG	4 cut(s)	52, 74, 589, 853
DdeI	CTNAG	2 cut(s)	94, 501
DpnI	GATC	6 cut(s)	86, 230, 714, 724, 857, 900
DpnII	GATC	6 cut(s)	84, 228, 712, 722, 855, 898
EaeI	YGGCCR	1 cut(s)	877
Eam1104I	CTCTTC	1 cut(s)	433
EarI	CTCTTC	1 cut(s)	433
Eco32I	GATATC	1 cut(s)	664
Eco47I	GGWCC	1 cut(s)	937
Eco57I	CTGAAG	2 cut(s)	171, 1139
EcoRI	GAATTC	1 cut(s)	847
EcoRII	CCWGG	2 cut(s)	842, 879
EcoRV	GATATC	1 cut(s)	664
FaeI	CATG	4 cut(s)	55, 77, 592, 856
FaqI	GGGAC	1 cut(s)	1011
FatI	CATG	4 cut(s)	51, 73, 588, 852
FbaI	TGATCA	3 cut(s)	84, 228, 855
Fnu4HI	GCNGC	3 cut(s)	200, 388, 787
FokI	GGATG	2 cut(s)	91, 1098
Fsp4HI	GCNGC	3 cut(s)	200, 388, 787
FspBI	CTAG	5 cut(s)	35, 204, 525, 561, 1044
FspI	TGCGCA	1 cut(s)	975
GlaI	GCGC	1 cut(s)	975
GluI	GCNGC	3 cut(s)	200, 388, 787
GsaI	CCCAGC	1 cut(s)	927
GsuI	CTGGAG	2 cut(s)	177, 1160
HaeIII	GGCC	1 cut(s)	879
HapII	CCGG	2 cut(s)	537, 935
HhaI	GCGC	1 cut(s)	976
Hin1II	CATG	4 cut(s)	55, 77, 592, 856
Hin6I	GCGC	1 cut(s)	974
HinP1I	GCGC	1 cut(s)	974
HindIII	AAGCTT	1 cut(s)	1103
HinfI	GANTC	3 cut(s)	263, 470, 745
HpaII	CCGG	2 cut(s)	537, 935
HphI	GGTGA	1 cut(s)	896
Hpy166II	GTNNAC	2 cut(s)	437, 685
Hpy188I	TCNGA	3 cut(s)	151, 233, 531
Hpy188III	TCNNGA	5 cut(s)	217, 935, 1126, 1139, 1186
Hpy8I	GTNNAC	2 cut(s)	437, 685
HpyAV	CCTTC	1 cut(s)	475
HpyCH4III	ACNGT	1 cut(s)	689
HpyCH4V	TGCA	8 cut(s)	292, 390, 461, 476, 752, 776, 1109, 1152
HpyF10VI	GCNNNNNNNGC	2 cut(s)	458, 566
HpyF3I	CTNAG	2 cut(s)	94, 501
Hsp92II	CATG	4 cut(s)	55, 77, 592, 856
HspAI	GCGC	1 cut(s)	974
Kpn2I	TCCGGA	1 cut(s)	934
Ksp22I	TGATCA	3 cut(s)	84, 228, 855
Kzo9I	GATC	6 cut(s)	84, 228, 712, 722, 855, 898
Lsp1109I	GCAGC	3 cut(s)	211, 374, 798
LweI	GCATC	3 cut(s)	810, 814, 1156
MaeI	CTAG	5 cut(s)	35, 204, 525, 561, 1044
MaeIII	GTNAC	1 cut(s)	1145
MalI	GATC	6 cut(s)	86, 230, 714, 724, 857, 900
MboI	GATC	6 cut(s)	84, 228, 712, 722, 855, 898
MboII	GAAGA	4 cut(s)	16, 420, 998, 1032
MhlI	GDGCHC	2 cut(s)	336, 652
MlsI	TGGCCA	1 cut(s)	879
MluCI	AATT	6 cut(s)	59, 145, 192, 847, 1049, 1195
MluNI	TGGCCA	1 cut(s)	879
MlyI	GAGTC	1 cut(s)	272
MnlI	CCTC	7 cut(s)	103, 227, 436, 559, 1059, 1181, 1184
Mox20I	TGGCCA	1 cut(s)	879
MroI	TCCGGA	1 cut(s)	934
MscI	TGGCCA	1 cut(s)	879
MseI	TTAA	1 cut(s)	738
Msp20I	TGGCCA	1 cut(s)	879
MspI	CCGG	2 cut(s)	537, 935
MspR9I	CCNGG	3 cut(s)	538, 844, 881
MvaI	CCWGG	2 cut(s)	844, 881
MwoI	GCNNNNNNNGC	2 cut(s)	458, 566
NciI	CCSGG	1 cut(s)	538
NdeII	GATC	6 cut(s)	84, 228, 712, 722, 855, 898
NlaIII	CATG	4 cut(s)	55, 77, 592, 856
NmuCI	GTSAC	1 cut(s)	1145
NsbI	TGCGCA	1 cut(s)	975
NspV	TTCGAA	1 cut(s)	242
PfeI	GAWTC	2 cut(s)	470, 745
PflFI	GACNNNGTC	1 cut(s)	1002
PkrI	GCNGC	3 cut(s)	201, 389, 788
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
Psp6I	CCWGG	2 cut(s)	842, 879
PspFI	CCCAGC	1 cut(s)	923
PspGI	CCWGG	2 cut(s)	842, 879
PspPI	GGNCC	1 cut(s)	937
PsyI	GACNNNGTC	1 cut(s)	1002
SaqAI	TTAA	1 cut(s)	738
SatI	GCNGC	3 cut(s)	200, 388, 787
Sau3AI	GATC	6 cut(s)	84, 228, 712, 722, 855, 898
Sau96I	GGNCC	1 cut(s)	937
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	3 cut(s)	538, 844, 881
SduI	GDGCHC	2 cut(s)	336, 652
SfaNI	GCATC	3 cut(s)	810, 814, 1156
SfuI	TTCGAA	1 cut(s)	242
SinI	GGWCC	1 cut(s)	937
SmlI	CTYRAG	1 cut(s)	790
SmoI	CTYRAG	1 cut(s)	790
SpeI	ACTAGT	1 cut(s)	524
Sse9I	AATT	6 cut(s)	59, 145, 192, 847, 1049, 1195
SsiI	CCGC	1 cut(s)	916
SspMI	CTAG	5 cut(s)	35, 204, 525, 561, 1044
StyD4I	CCNGG	3 cut(s)	536, 842, 879
TaaI	ACNGT	1 cut(s)	689
TaqI	TCGA	7 cut(s)	242, 347, 606, 652, 725, 813, 1185
TasI	AATT	6 cut(s)	59, 145, 192, 847, 1049, 1195
TfiI	GAWTC	2 cut(s)	470, 745
Tru1I	TTAA	1 cut(s)	738
Tru9I	TTAA	1 cut(s)	738
TscAI	CASTG	2 cut(s)	361, 865
TseFI	GTSAC	1 cut(s)	1145
TseI	GCWGC	3 cut(s)	199, 387, 786
Tsp45I	GTSAC	1 cut(s)	1145
TspDTI	ATGAA	5 cut(s)	17, 353, 371, 998, 1070
TspGWI	ACGGA	1 cut(s)	705
TspRI	CASTG	2 cut(s)	361, 865
Tth111I	GACNNNGTC	1 cut(s)	1002
VpaK11BI	GGWCC	1 cut(s)	937
XapI	RAATTY	1 cut(s)	847
XspI	CTAG	5 cut(s)	35, 204, 525, 561, 1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.